Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.A00953 Erythranthe guttata HOM05D005852 ORTHO05D006688 1.6e-261 905.6 476 100.0
MSTRG.12100 Avicennia marina HOM05D005852 ORTHO05D006688 3.2e-185 652.1 478 76.2
CSS0024762 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 2.8e-165 585.9 480 67.1
MSTRG.25523 Avicennia marina HOM05D005852 ORTHO05D006688 1.2e-163 580.5 477 69.0
Oeu002340.2 Olea europaea HOM05D005852 ORTHO05D006688 2.2e-162 576.2 441 70.7
Actinidia17918 Actinidia chinensis HOM05D005852 ORTHO05D006688 6.8e-159 564.7 480 66.2
TAR362G0299 Trochodendron aralioides HOM05D005852 ORTHO05D006688 1.3e-157 560.5 480 65.2
GSVIVG01028150001 Vitis vinifera HOM05D005852 ORTHO05D006688 2.2e-157 559.7 480 65.2
Thecc.01G317000 Theobroma cacao HOM05D005852 ORTHO05D006688 2.8e-157 559.3 480 65.2
Duzib138G0780 Durio zibethinus HOM05D005852 ORTHO05D006688 1.4e-156 557.0 480 64.2
Hma1.2p1_0408F.1_g146510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 1.4e-156 557.0 480 65.8
PGSC0003DMG400004761 Solanum tuberosum HOM05D005852 ORTHO05D006688 2.4e-156 556.2 481 63.4
Dinv33136 Davidia involucrata HOM05D005852 ORTHO05D006688 4.1e-156 555.4 438 69.2
Oeu040211.2 Olea europaea HOM05D005852 ORTHO05D006688 5.4e-156 555.1 502 63.3
COL.COLO4_23201 Corchorus olitorius HOM05D005852 ORTHO05D006688 7.7e-155 551.2 481 63.6
Sopen08g027090 Solanum pennellii HOM05D005852 ORTHO05D006688 5.0e-154 548.5 481 62.6
Solyc08g078610.4 Solanum lycopersicum HOM05D005852 ORTHO05D006688 6.6e-154 548.1 481 62.6
Gorai.001G145000 Gossypium raimondii HOM05D005852 ORTHO05D006688 8.6e-154 547.7 480 63.5
Nitab4.5_0014313g0030 Nicotiana tabacum HOM05D005852 ORTHO05D006688 2.5e-153 546.2 487 62.6
Cc08_g12410 Coffea canephora HOM05D005852 ORTHO05D006688 3.3e-153 545.8 482 63.9
Nitab4.5_0000312g0040 Nicotiana tabacum HOM05D005852 ORTHO05D006688 7.3e-153 544.7 533 58.5
Manes.01G230200 Manihot esculenta HOM05D005852 ORTHO05D006688 1.6e-152 543.5 482 64.5
QL12p019002 Quercus lobata HOM05D005852 ORTHO05D006688 1.4e-151 540.4 485 63.3
CAN.G1058.28 Capsicum annuum HOM05D005852 ORTHO05D006688 6.8e-151 538.1 487 62.8
Gohir.D07G133700 Gossypium hirsutum HOM05D005852 ORTHO05D006688 2.0e-150 536.6 480 62.7
RcHm_v2.0_Chr3g0487181 Rosa chinensis HOM05D005852 ORTHO05D006688 2.6e-150 536.2 481 62.4
Rhsim13G0003100 Rhododendron simsii HOM05D005852 ORTHO05D006688 1.3e-149 533.9 501 60.9
SGA_v2.0_scaffold146G36149 Striga asiatica HOM05D005852 ORTHO05D006688 1.8e-148 530.0 443 66.6
Peaxi162Scf00174g00140 Petunia axillaris HOM05D005852 ORTHO05D006688 3.5e-147 525.8 523 57.4
Ciclev10023332m.g Citrus clementina HOM05D005852 ORTHO05D006688 5.9e-147 525.0 481 63.4
FvH4_1g26940 Fragaria vesca HOM05D005852 ORTHO05D006688 4.3e-145 518.8 482 61.4
vmacro02386 Vaccinium macrocarpon HOM05D005852 ORTHO05D006688 5.6e-145 518.5 501 60.1
Atru.chr5.963 Acer truncatum HOM05D005852 ORTHO05D006688 1.6e-144 516.9 480 62.5
Hma1.2p1_0486F.1_g163510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 2.1e-144 516.5 480 61.9
DCAR_002882 Daucus carota HOM05D005852 ORTHO05D006688 4.7e-144 515.4 479 61.2
Haze_05075 Corylus avellana HOM05D005852 ORTHO05D006688 1.4e-143 513.8 511 58.3
FAN26G2795 Fragaria x ananassa HOM05D005852 ORTHO05D006688 1.8e-143 513.5 481 60.5
Prupe.3G008300 Prunus persica HOM05D005852 ORTHO05D006688 1.8e-143 513.5 480 60.8
FAN19G1535 Fragaria x ananassa HOM05D005852 ORTHO05D006688 4.0e-143 512.3 482 60.8
FAN28G0451 Fragaria x ananassa HOM05D005852 ORTHO05D006688 4.0e-143 512.3 482 60.6
MD17G1278200 Malus domestica HOM05D005852 ORTHO05D006688 5.2e-143 511.9 482 60.6
Duzib133G0199 Durio zibethinus HOM05D005852 ORTHO05D006688 6.8e-143 511.5 479 60.1
FAN28G0588 Fragaria x ananassa HOM05D005852 ORTHO05D006688 6.8e-143 511.5 482 60.2
CSS0026378 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 1.5e-142 510.4 541 57.3
FAN23G1709 Fragaria x ananassa HOM05D005852 ORTHO05D006688 2.6e-142 509.6 482 60.2
Potri.002G192800 Populus trichocarpa HOM05D005852 ORTHO05D006688 4.4e-142 508.8 479 62.2
Potri.014G118100 Populus trichocarpa HOM05D005852 ORTHO05D006688 9.8e-142 507.7 482 62.4
Glyma.03G221000 Glycine max HOM05D005852 ORTHO05D006688 1.7e-141 506.9 480 58.1
arahy.Tifrunner.gnm1.ann1.BXR415 Arachis hypogaea HOM05D005852 ORTHO05D006688 2.9e-141 506.1 479 59.1
TWI75G1100 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 1.1e-140 504.2 478 60.3
Glyma.19G218000 Glycine max HOM05D005852 ORTHO05D006688 3.2e-140 502.7 480 58.3
MD09G1285600 Malus domestica HOM05D005852 ORTHO05D006688 7.0e-140 501.5 482 59.3
VMungo1383G3312 Vigna mungo HOM05D005852 ORTHO05D006688 1.2e-139 500.7 482 58.3
Aqoxy5G02690 Aquilegia oxysepala HOM05D005852 ORTHO05D006688 7.8e-139 498.0 492 57.9
Phvul.001G214600 Phaseolus vulgaris HOM05D005852 ORTHO05D006688 2.3e-138 496.5 480 57.5
TWI36G1268 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 6.6e-138 495.0 481 61.3
Lj1g0015719 Lotus japonicus HOM05D005852 ORTHO05D006688 3.3e-137 492.7 481 58.4
arahy.Tifrunner.gnm1.ann1.8ZIL5S Arachis hypogaea HOM05D005852 ORTHO05D006688 4.3e-137 492.3 503 55.7
unitig_21.g20328 Utricularia gibba HOM05D005852 ORTHO05D006688 5.6e-137 491.9 441 63.7
Eucgr.K03554 Eucalyptus grandis HOM05D005852 ORTHO05D006688 1.2e-136 490.7 479 59.1
Lalb_Chr18g0046571 Lupinus albus HOM05D005852 ORTHO05D006688 4.4e-134 482.3 483 58.4
CsaV3_3G026570 Cucumis sativus L. HOM05D005852 ORTHO05D006688 1.3e-133 480.7 481 57.8
CANSAT25G1874 Cannabis sativa HOM05D005852 ORTHO05D006688 1.7e-133 480.3 406 65.3
ClCG10G011590 Citrullus lanatus HOM05D005852 ORTHO05D006688 4.9e-133 478.8 503 56.7
PGR044G1849 Punica granatum HOM05D005852 ORTHO05D006688 1.2e-128 464.2 479 57.0
TPR.G4094 Trifolium pratense HOM05D005852 ORTHO05D006688 5.2e-127 458.8 511 52.3
Sabra02G0163100 Salix brachista HOM05D005852 ORTHO05D006688 1.1e-124 451.1 502 55.0
Ca_09223_v3 Cicer arietinum L. HOM05D005852 ORTHO05D006688 1.4e-124 450.7 516 52.3
EL10Ac1g01717 Beta vulgaris HOM05D005852 ORTHO05D006688 7.8e-123 444.9 529 51.4
ECA247G2785 Erigeron canadensis HOM05D005852 ORTHO05D006688 2.3e-122 443.4 480 55.4
Sc05g0000300 Simmondsia chinensis HOM05D005852 ORTHO05D006688 5.1e-122 442.2 481 54.3
MBI18_g35540_MAGBIO Magnolia biondii HOM05D005852 ORTHO05D006688 9.6e-121 438.0 511 50.5
CiPaw.08G087500 Carya illinoinensis HOM05D005852 ORTHO05D006688 4.7e-120 435.6 485 55.7
THA.LOC104817449 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 4.7e-120 435.6 476 54.6
Hund17504 Selenicereus undatus HOM05D005852 ORTHO05D006688 4.0e-119 432.6 494 54.9
AL2G23460 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 5.2e-119 432.2 492 53.5
Cpa.g.sc18.85 Carica papaya HOM05D005852 ORTHO05D006688 5.2e-119 432.2 383 64.8
Lsat_1_v5_gn_8_166621 Lactuca sativa HOM05D005852 ORTHO05D006688 6.9e-119 431.8 484 53.9
Lj1A15T56 Lonicera japonica HOM05D005852 ORTHO05D006688 8.9e-119 431.4 491 55.2
AL5G45080 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 2.2e-117 426.8 492 53.0
Psat3g018920 Pisum sativum HOM05D005852 ORTHO05D006688 6.4e-117 425.2 489 51.1
TAR365G0405 Trochodendron aralioides HOM05D005852 ORTHO05D006688 1.1e-116 424.5 422 56.9
HanXRQChr10g0284731 Helianthus annuus HOM05D005852 ORTHO05D006688 1.9e-116 423.7 483 53.2
PSO761G0671 Papaver somniferum HOM05D005852 ORTHO05D006688 3.2e-116 422.9 545 49.9
AT3G62330 Arabidopsis thaliana HOM05D005852 ORTHO05D006688 7.1e-116 421.8 493 53.5
PSO210G2075 Papaver somniferum HOM05D005852 ORTHO05D006688 4.6e-115 419.1 545 49.5
THA.LOC104802145 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 4.6e-115 419.1 479 54.1
Sp5g01060 Schrenkiella parvula HOM05D005852 ORTHO05D006688 3.0e-114 416.4 490 53.5
Carub.0005s2904 Capsella rubella HOM05D005852 ORTHO05D006688 1.5e-113 414.1 493 53.1
MELO3C012930.2 Cucumis melo HOM05D005852 ORTHO05D006688 4.3e-113 412.5 367 64.0
Ah.05g168400 Amaranthus hybridus HOM05D005852 ORTHO05D006688 3.6e-112 409.5 567 47.3
CARHR172660 Cardamine hirsuta HOM05D005852 ORTHO05D006688 9.0e-111 404.8 495 53.5
Thhalv10005921m.g Eutrema salsugineum HOM05D005852 ORTHO05D006688 1.2e-110 404.4 503 51.3
Sed0012344 Sechium edule HOM05D005852 ORTHO05D006688 4.5e-110 402.5 367 62.7
ATR0693G434 Amborella trichopoda HOM05D005852 ORTHO05D006688 9.3e-108 394.8 494 50.4
BraA09t40845Z Brassica rapa HOM05D005852 ORTHO05D006688 2.7e-107 393.3 525 50.1
BolC8t51298H Brassica oleracea HOM05D005852 ORTHO05D006688 3.5e-107 392.9 502 51.8
A09p54330 Brassica napus HOM05D005852 ORTHO05D006688 4.6e-107 392.5 506 51.4
C08p37210 Brassica napus HOM05D005852 ORTHO05D006688 1.6e-104 384.0 502 50.8
Aa31LG10G16270 Aethionema arabicum HOM05D005852 ORTHO05D006688 1.2e-102 377.9 570 44.4
TAR633G0114 Trochodendron aralioides HOM05D005852 ORTHO05D006688 1.2e-102 377.9 323 65.6
SHI33189 Sapria himalayana HOM05D005852 ORTHO05D006688 4.5e-102 375.9 547 46.1
CDE02G4238 Ceratophyllum demersum HOM05D005852 ORTHO05D006688 3.9e-98 362.8 494 48.4
AUR62022309 Chenopodium quinoa HOM05D005852 ORTHO05D006688 1.0e-93 348.2 531 43.9
AUR62034930 Chenopodium quinoa HOM05D005852 ORTHO05D006688 2.9e-93 346.7 527 43.8
CiPaw.07G119700 Carya illinoinensis HOM05D005852 ORTHO05D006688 1.4e-84 317.8 267 68.2
Gohir.A07G129400 Gossypium hirsutum HOM05D005852 ORTHO05D006688 8.2e-80 302.0 332 55.4
Nn3g21757 Nelumbo nucifera HOM05D005852 ORTHO05D006688 3.3e-65 253.4 175 72.6
HPP92_012784 Vanilla planifolia HOM05D005852 ORTHO05D006688 1.3e-64 251.5 363 46.3
C02p35770 Brassica napus HOM05D005852 ORTHO05D006688 1.2e-62 245.0 231 60.2
C02p58000 Brassica napus HOM05D005852 ORTHO05D006688 1.7e-61 241.1 231 59.3
Os01g0252900 Oryza sativa ssp. japonica HOM05D005852 ORTHO05D006688 2.5e-60 237.3 269 52.0
SEGI_21105 Sequoiadendron giganteum HOM05D005852 ORTHO05D006688 4.7e-59 233.0 479 36.7
BolC2t11869H Brassica oleracea HOM05D005852 ORTHO05D006688 8.0e-59 232.3 228 58.8
Zm00001eb333730 Zea mays HOM05D005852 ORTHO05D006688 4.4e-57 226.5 268 51.5
Hma1.2p1_0055F.1_g031510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 4.0e-50 203.4 221 52.9
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 1.2e-49 201.8 526 34.4
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 3.8e-45 186.8 528 33.0
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 5.7e-41 172.9 420 35.7
SGA_v2.0_scaffold120G32887 Striga asiatica HOM05D005852 ORTHO05D006688 2.7e-38 164.1 160 58.8
Pp3c2_16330 Physcomitrium patens HOM05D005852 ORTHO05D006688 1.2e-35 155.2 199 45.7
Nn4g25538 Nelumbo nucifera HOM05D005852 ORTHO05D006688 1.0e-34 152.1 101 78.2
Pp3c1_21140 Physcomitrium patens HOM05D005852 ORTHO05D006688 5.8e-33 146.4 435 30.8
AUR62032106 Chenopodium quinoa HOM05D005852 ORTHO05D006688 4.1e-31 140.2 378 32.3
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 3.5e-30 137.1 499 29.7
BcaNung00812 Brassica carinata HOM05D005852 ORTHO05D006688 6.6e-29 132.9 140 55.0
CDE08G0400 Ceratophyllum demersum HOM05D004749 ORTHO05D005995 7.3e-28 129.4 179 44.1
CBR_g31172 Chara braunii HOM05D005852 ORTHO05D006688 4.0e-26 123.6 459 28.3
Actinidia20978 Actinidia chinensis HOM05D005852 ORTHO05D006688 5.0e-21 106.7 135 48.1
BolC5t33669H Brassica oleracea HOM05D005852 ORTHO05D006688 5.8e-17 93.2 80 65.0
Nn3g21758 Nelumbo nucifera HOM05D005852 ORTHO05D006688 9.5e-12 75.9 113 39.8
Lsat_1_v5_gn_3_89981 Lactuca sativa HOM05D005852 ORTHO05D006688 8.1e-11 72.8 41 80.5
HPP92_012783 Vanilla planifolia HOM05D005852 ORTHO05D006688 1.4e-07 62.0 91 50.5


User provided reference genes

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