Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.A00832 Erythranthe guttata HOM05D005292 ORTHO05D006473 2.6e-215 751.9 407 100.0
MSTRG.12063 Avicennia marina HOM05D005292 ORTHO05D006473 5.1e-163 578.2 390 75.1
PGSC0003DMG400003959 Solanum tuberosum HOM05D005292 ORTHO05D006473 3.3e-154 548.9 402 74.1
Oeu016513.1 Olea europaea HOM05D005292 ORTHO05D006473 3.6e-153 545.4 399 69.9
Nitab4.5_0003534g0020 Nicotiana tabacum HOM05D005292 ORTHO05D006473 1.1e-152 543.9 398 72.6
Solyc08g079450.3 Solanum lycopersicum HOM05D005292 ORTHO05D006473 1.1e-152 543.9 397 70.0
Peaxi162Scf00271g00021 Petunia axillaris HOM05D005292 ORTHO05D006473 1.8e-152 543.1 396 69.2
Sopen08g027820 Solanum pennellii HOM05D005292 ORTHO05D006473 2.4e-152 542.7 397 70.0
CAN.G630.87 Capsicum annuum HOM05D005292 ORTHO05D006473 9.0e-152 540.8 397 68.3
Nitab4.5_0007591g0040 Nicotiana tabacum HOM05D005292 ORTHO05D006473 3.4e-151 538.9 409 75.1
SGA_v2.0_scaffold120G32820 Striga asiatica HOM05D005292 ORTHO05D006473 1.3e-150 537.0 437 66.8
Manes.02G033900 Manihot esculenta HOM05D005292 ORTHO05D006473 9.3e-149 530.8 287 87.5
Atru.chr9.1428 Acer truncatum HOM05D005292 ORTHO05D006473 1.2e-148 530.4 288 87.5
Cfa012803 Carpinus fangiana HOM05D005292 ORTHO05D006473 2.1e-148 529.6 289 86.2
TWI15G0139 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 3.5e-148 528.9 361 76.7
CANSAT80G2034 Cannabis sativa HOM05D005292 ORTHO05D006473 4.6e-148 528.5 342 76.0
Cc08_g13210 Coffea canephora HOM05D005292 ORTHO05D006473 4.6e-148 528.5 363 75.8
Potri.003G114900 Populus trichocarpa HOM05D005292 ORTHO05D006473 4.6e-148 528.5 287 86.8
CSS0004035 Camellia sinensis var. sinensis HOM05D005292 ORTHO05D006473 6.0e-148 528.1 289 85.5
Lj8A255T56 Lonicera japonica HOM05D005292 ORTHO05D006473 1.7e-147 526.6 287 85.7
Potri.001G118000 Populus trichocarpa HOM05D005292 ORTHO05D006473 1.7e-147 526.6 287 86.4
Cpa.g.sc29.95 Carica papaya HOM05D005292 ORTHO05D006473 3.0e-147 525.8 287 86.4
CiPaw.12G105300 Carya illinoinensis HOM05D005292 ORTHO05D006473 3.0e-147 525.8 289 85.8
ECA233G3282 Erigeron canadensis HOM05D005292 ORTHO05D006473 3.0e-147 525.8 348 77.0
Prupe.5G079200 Prunus persica HOM05D005292 ORTHO05D006473 1.1e-146 523.9 289 85.1
GSVIVG01004916001 Vitis vinifera HOM05D005292 ORTHO05D006473 1.1e-146 523.9 289 85.1
Dinv21573 Davidia involucrata HOM05D005292 ORTHO05D006473 3.3e-146 522.3 287 85.7
Glyma.05G052500 Glycine max HOM05D005292 ORTHO05D006473 3.3e-146 522.3 288 86.8
TPR.G37684 Trifolium pratense HOM05D005292 ORTHO05D006473 3.3e-146 522.3 288 85.8
THA.LOC104813867 Tarenaya hassleriana HOM05D005292 ORTHO05D006473 5.6e-146 521.5 287 84.3
FAN04G0899 Fragaria x ananassa HOM05D005292 ORTHO05D006473 7.3e-146 521.2 289 85.1
arahy.Tifrunner.gnm1.ann1.VS5X7Y Arachis hypogaea HOM05D005292 ORTHO05D006473 9.6e-146 520.8 403 67.0
CiPaw.11G147800 Carya illinoinensis HOM05D005292 ORTHO05D006473 1.3e-145 520.4 289 85.1
Glyma.17G134700 Glycine max HOM05D005292 ORTHO05D006473 1.3e-145 520.4 288 86.8
QL12p014915 Quercus lobata HOM05D005292 ORTHO05D006473 1.3e-145 520.4 289 84.8
Lj4g0005126 Lotus japonicus HOM05D005292 ORTHO05D006473 1.6e-145 520.0 402 66.7
SalBow1G6483 Salvia bowleyana HOM05D005292 ORTHO05D006473 1.6e-145 520.0 375 70.9
FAN08G1347 Fragaria x ananassa HOM05D005292 ORTHO05D006473 2.8e-145 519.2 289 85.1
FAN13G3324 Fragaria x ananassa HOM05D005292 ORTHO05D006473 2.8e-145 519.2 289 84.8
FAN18G3339 Fragaria x ananassa HOM05D005292 ORTHO05D006473 2.8e-145 519.2 289 85.1
Thecc.03G261400 Theobroma cacao HOM05D005292 ORTHO05D006473 3.6e-145 518.8 403 68.7
VMungo1215G1740 Vigna mungo HOM05D005292 ORTHO05D006473 3.6e-145 518.8 288 86.5
Psat4g068120 Pisum sativum HOM05D005292 ORTHO05D006473 4.8e-145 518.5 288 86.1
arahy.Tifrunner.gnm1.ann1.YRMJ3W Arachis hypogaea HOM05D005292 ORTHO05D006473 6.2e-145 518.1 404 66.3
Ciclev10020454m.g Citrus clementina HOM05D005292 ORTHO05D006473 8.1e-145 517.7 289 84.8
Eucgr.D01991 Eucalyptus grandis HOM05D005292 ORTHO05D006473 1.8e-144 516.5 285 86.0
Nn1g01261 Nelumbo nucifera HOM05D005292 ORTHO05D006473 1.8e-144 516.5 380 67.6
HanXRQChr02g0046251 Helianthus annuus HOM05D005292 ORTHO05D006473 2.4e-144 516.2 286 83.9
Medtr4g102260 Medicago truncatula HOM05D005292 ORTHO05D006473 2.4e-144 516.2 407 68.1
Phvul.003G214500 Phaseolus vulgaris HOM05D005292 ORTHO05D006473 2.4e-144 516.2 288 86.1
RcHm_v2.0_Chr7g0201621 Rosa chinensis HOM05D005292 ORTHO05D006473 2.4e-144 516.2 289 84.4
PGR031G2306 Punica granatum HOM05D005292 ORTHO05D006473 4.0e-144 515.4 283 85.5
Actinidia02093 Actinidia chinensis HOM05D005292 ORTHO05D006473 9.0e-144 514.2 287 84.3
Duzib084G0213 Durio zibethinus HOM05D005292 ORTHO05D006473 9.0e-144 514.2 401 65.6
MD04G1079900 Malus domestica HOM05D005292 ORTHO05D006473 9.0e-144 514.2 405 66.9
COL.COLO4_31983 Corchorus olitorius HOM05D005292 ORTHO05D006473 1.2e-143 513.8 403 64.3
Ca_12278_v3 Cicer arietinum L. HOM05D005292 ORTHO05D006473 2.6e-143 512.7 403 67.5
HanXRQChr07g0188671 Helianthus annuus HOM05D005292 ORTHO05D006473 4.5e-143 511.9 354 71.5
Hma1.2p1_0367F.1_g137040 Hydrangea macrophylla HOM05D005292 ORTHO05D006473 5.8e-143 511.5 282 85.5
PSO478G4449 Papaver somniferum HOM05D005292 ORTHO05D006473 7.6e-143 511.1 289 83.4
Sc22g0000600 Simmondsia chinensis HOM05D005292 ORTHO05D006473 7.6e-143 511.1 284 83.8
CsaV3_5G003780 Cucumis sativus L. HOM05D005292 ORTHO05D006473 1.3e-142 510.4 281 85.8
DCAR_006803 Daucus carota HOM05D005292 ORTHO05D006473 1.3e-142 510.4 351 76.9
Sed0004099 Sechium edule HOM05D005292 ORTHO05D006473 2.2e-142 509.6 398 66.1
Thhalv10028717m.g Eutrema salsugineum HOM05D005292 ORTHO05D006473 2.9e-142 509.2 336 77.1
AL6G47090 Arabidopsis lyrata HOM05D005292 ORTHO05D006473 3.8e-142 508.8 286 83.2
CARHR254020 Cardamine hirsuta HOM05D005292 ORTHO05D006473 3.8e-142 508.8 287 83.3
Sp6g05330 Schrenkiella parvula HOM05D005292 ORTHO05D006473 3.8e-142 508.8 287 83.6
Aqoxy7G00654 Aquilegia oxysepala HOM05D005292 ORTHO05D006473 4.9e-142 508.4 288 82.3
Gohir.D03G157800 Gossypium hirsutum HOM05D005292 ORTHO05D006473 4.9e-142 508.4 287 84.3
AT4G12230 Arabidopsis thaliana HOM05D005292 ORTHO05D006473 8.4e-142 507.7 286 83.2
Gohir.A03G012000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 8.4e-142 507.7 289 83.7
PSO782G2032 Papaver somniferum HOM05D005292 ORTHO05D006473 1.1e-141 507.3 280 84.6
Gohir.A11G020400 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.9e-141 506.5 287 84.0
EL10Ac5g12610 Beta vulgaris HOM05D005292 ORTHO05D006473 2.4e-141 506.1 285 82.1
CDE09G1063 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 3.2e-141 505.8 288 80.9
MBI12_g31646_MAGBIO Magnolia biondii HOM05D005292 ORTHO05D006473 3.2e-141 505.8 402 68.9
Gohir.D12G223000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 4.2e-141 505.4 406 63.3
Gorai.007G021400 Gossypium raimondii HOM05D005292 ORTHO05D006473 5.4e-141 505.0 288 83.7
BcaB01g02654 Brassica carinata HOM05D005292 ORTHO05D006473 7.1e-141 504.6 287 82.6
Carub.0006s3135 Capsella rubella HOM05D005292 ORTHO05D006473 9.3e-141 504.2 287 81.9
Lalb_Chr05g0225431 Lupinus albus HOM05D005292 ORTHO05D006473 3.5e-140 502.3 403 65.3
Hund14648 Selenicereus undatus HOM05D005292 ORTHO05D006473 3.5e-140 502.3 285 81.8
Gorai.003G166300 Gossypium raimondii HOM05D005292 ORTHO05D006473 6.0e-140 501.5 282 83.7
TAR636G1323 Trochodendron aralioides HOM05D005292 ORTHO05D006473 2.3e-139 499.6 283 83.4
Aa31LG9G10310 Aethionema arabicum HOM05D005292 ORTHO05D006473 3.0e-139 499.2 313 76.7
BcaC01g04601 Brassica carinata HOM05D005292 ORTHO05D006473 5.1e-139 498.4 366 73.2
Gohir.D11G020100 Gossypium hirsutum HOM05D005292 ORTHO05D006473 6.7e-139 498.0 287 82.6
A03p29600 Brassica napus HOM05D005292 ORTHO05D006473 1.9e-138 496.5 366 73.5
BraA03t12155Z Brassica rapa HOM05D005292 ORTHO05D006473 3.3e-138 495.7 336 78.3
vmacro14043 Vaccinium macrocarpon HOM05D005292 ORTHO05D006473 4.3e-138 495.4 381 67.2
AUR62010507 Chenopodium quinoa HOM05D005292 ORTHO05D006473 1.3e-137 493.8 285 80.0
C03p35880 Brassica napus HOM05D005292 ORTHO05D006473 2.8e-137 492.7 385 70.4
BolC3t15896H Brassica oleracea HOM05D005292 ORTHO05D006473 2.8e-137 492.7 385 70.4
Gorai.008G239300 Gossypium raimondii HOM05D005292 ORTHO05D006473 6.2e-137 491.5 431 59.4
Os10g0169800 Oryza sativa ssp. japonica HOM05D005292 ORTHO05D006473 2.4e-136 489.6 295 77.3
unitig_744.g24320 Utricularia gibba HOM05D005292 ORTHO05D006473 3.1e-136 489.2 375 65.1
Ah.12g058260 Amaranthus hybridus HOM05D005292 ORTHO05D006473 4.0e-136 488.8 318 73.3
Dinv39082 Davidia involucrata HOM05D005292 ORTHO05D006473 1.3e-134 483.8 401 63.1
Zm00001eb026990 Zea mays HOM05D005292 ORTHO05D006473 8.4e-134 481.1 287 77.4
Gohir.A12G220700 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.1e-133 480.7 296 77.7
Lsat_1_v5_gn_6_9841 Lactuca sativa HOM05D005292 ORTHO05D006473 5.5e-133 478.4 265 84.9
Ah.02g116220 Amaranthus hybridus HOM05D005292 ORTHO05D006473 7.1e-133 478.0 266 83.1
Sabra01G0090700 Salix brachista HOM05D005292 ORTHO05D006473 1.6e-132 476.9 383 64.5
ClCG01G003660 Citrullus lanatus HOM05D005292 ORTHO05D006473 6.7e-131 471.5 297 78.5
ATR0757G031 Amborella trichopoda HOM05D005292 ORTHO05D006473 6.2e-129 464.9 280 79.3
CDE11G0205 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 5.8e-127 458.4 264 80.7
AUR62017394 Chenopodium quinoa HOM05D005292 ORTHO05D006473 5.5e-125 451.8 264 79.2
HPP92_014608 Vanilla planifolia HOM05D005292 ORTHO05D006473 5.5e-125 451.8 265 78.9
Nn4g26373 Nelumbo nucifera HOM05D005292 ORTHO05D006473 2.7e-124 449.5 368 63.0
TWI15G0397 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 1.1e-122 444.1 361 70.4
Haze_08610 Corylus avellana HOM05D005292 ORTHO05D006473 1.3e-121 440.7 349 65.6
Pp3c6_20320 Physcomitrium patens HOM05D005292 ORTHO05D006473 1.1e-114 417.5 285 67.4
SEGI_16146 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 1.3e-113 414.1 284 66.5
Rhsim07G0101700 Rhododendron simsii HOM05D005292 ORTHO05D006473 1.3e-110 404.1 306 66.3
Sabra03G0079600 Salix brachista HOM05D005292 ORTHO05D006473 1.3e-110 404.1 219 85.8
Mapoly0066s0051 Marchantia polymorpha HOM05D005292 ORTHO05D006473 1.4e-109 400.6 272 67.3
FvH4_5g00640 Fragaria vesca HOM05D005292 ORTHO05D006473 9.4e-109 397.9 225 84.9
SMO223G0031 Selaginella moellendorffii HOM05D005292 ORTHO05D006473 1.4e-107 394.0 274 65.3
AagrBONN_evm.TU.Sc2ySwM_368.248 Anthoceros agrestis HOM05D005292 ORTHO05D006473 3.3e-106 389.4 275 65.1
Oeu022319.3 Olea europaea HOM05D005292 ORTHO05D006473 2.4e-96 356.7 410 51.2
TAR629G1108 Trochodendron aralioides HOM05D005292 ORTHO05D006473 3.5e-95 352.8 183 88.5
Actinidia14462 Actinidia chinensis HOM05D005292 ORTHO05D006473 2.6e-90 336.7 401 52.4
Duzib205G1434 Durio zibethinus HOM05D005292 ORTHO05D006473 1.1e-88 331.3 411 49.1
Aa31LG11G5120 Aethionema arabicum HOM05D005292 ORTHO05D006473 2.2e-73 280.4 147 85.0
MD06G1074900 Malus domestica HOM05D005292 ORTHO05D006473 1.6e-71 274.2 147 83.7
Dinv37766 Davidia involucrata HOM05D005292 ORTHO05D006473 2.0e-63 247.3 146 80.8
Lsat_1_v5_gn_8_156781 Lactuca sativa HOM05D005292 ORTHO05D006473 3.0e-46 190.3 173 59.0
Lsat_1_v5_gn_8_88300 Lactuca sativa HOM05D005292 ORTHO05D006473 1.1e-45 188.3 185 53.5
Lsat_1_v5_gn_2_99060 Lactuca sativa HOM05D005292 ORTHO05D006473 4.2e-40 169.9 120 71.7
SEGI_25328 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 5.6e-37 159.5 94 71.3
MELO3C005579.2 Cucumis melo HOM05D005292 ORTHO05D006473 7.3e-37 159.1 201 54.7
Lsat_1_v5_gn_8_99640 Lactuca sativa HOM05D005292 ORTHO05D006473 2.4e-35 154.1 161 52.8
Cc08_g13200 Coffea canephora HOM05D005292 ORTHO05D006473 2.5e-29 134.0 66 89.4
SEGI_08273 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 1.4e-27 128.3 84 71.4
CDE11G1060 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 3.1e-27 127.1 66 83.3
TAR636G3691 Trochodendron aralioides HOM05D005292 ORTHO05D006473 5.4e-24 116.3 66 80.3
MD06G1074800 Malus domestica HOM05D005292 ORTHO05D006473 1.3e-22 111.7 72 73.6
SEGI_15988 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 6.7e-22 109.4 66 75.8
TWI81G0363 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 2.1e-20 104.4 71 70.4
Glyma.05G052200 Glycine max HOM05D005292 ORTHO05D006473 4.8e-20 103.2 138 44.9
Eucgr.C02046 Eucalyptus grandis HOM05D005292 ORTHO05D006473 3.2e-16 90.5 66 69.7
vmacro17465 Vaccinium macrocarpon HOM05D002883 ORTHO05D003116 9.3e-16 89.0 66 63.6
Peaxi162Scf00102g01237 Petunia axillaris HOM05D000023 ORTHO05D013611 3.0e-06 57.4 46 56.5


User provided reference genes

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