Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.A00713 Erythranthe guttata HOM05D000827 ORTHO05D001318 9.6e-53 209.9 108 100.0
Migut.I00273 Erythranthe guttata HOM05D000827 ORTHO05D001318 6.2e-44 180.6 101 95.0
Oeu016085.1 Olea europaea HOM05D000827 ORTHO05D001318 8.2e-28 127.1 107 67.3
Oeu010412.1 Olea europaea HOM05D000827 ORTHO05D001318 1.4e-27 126.3 101 69.3
Lj5A217G84 Lonicera japonica HOM05D000827 ORTHO05D001318 9.1e-27 123.6 101 73.3
Dinv42213 Davidia involucrata HOM05D000827 ORTHO05D001318 3.4e-26 121.7 108 62.0
SalBow6G5645 Salvia bowleyana HOM05D000827 ORTHO05D001318 3.4e-26 121.7 99 70.7
Hma1.2p1_1023F.1_g248950 Hydrangea macrophylla HOM05D000827 ORTHO05D001318 1.0e-25 120.2 108 63.9
SGA_v2.0_scaffold13G06620 Striga asiatica HOM05D000827 ORTHO05D001318 2.2e-25 119.0 102 66.7
MSTRG.16697 Avicennia marina HOM05D000827 ORTHO05D001318 5.0e-25 117.9 101 65.3
CAN.G606.32 Capsicum annuum HOM05D000827 ORTHO05D001318 6.5e-25 117.5 109 68.8
Dinv15782 Davidia involucrata HOM05D000827 ORTHO05D001318 6.5e-25 117.5 106 67.0
Hma1.2p1_1174F.1_g263910 Hydrangea macrophylla HOM05D000827 ORTHO05D001318 1.6e-23 112.8 106 64.2
vmacro19463 Vaccinium macrocarpon HOM05D000827 ORTHO05D001318 1.6e-23 112.8 106 67.0
MSTRG.20202 Avicennia marina HOM05D000827 ORTHO05D001318 2.7e-23 112.1 101 64.4
Nitab4.5_0002017g0070 Nicotiana tabacum HOM05D000827 ORTHO05D001318 2.7e-23 112.1 102 66.7
CSS0013162 Camellia sinensis var. sinensis HOM05D000827 ORTHO05D001318 3.6e-23 111.7 109 63.3
Migut.B00414 Erythranthe guttata HOM05D000827 ORTHO05D001318 4.7e-23 111.3 104 62.5
Nitab4.5_0004396g0010 Nicotiana tabacum HOM05D000827 ORTHO05D001318 7.9e-23 110.5 102 69.6
PGSC0003DMG400025852 Solanum tuberosum HOM05D000827 ORTHO05D001318 7.9e-23 110.5 108 63.0
Sopen01g049570 Solanum pennellii HOM05D000827 ORTHO05D001318 1.0e-22 110.2 108 63.0
Nitab4.5_0004685g0010 Nicotiana tabacum HOM05D000827 ORTHO05D001318 1.4e-22 109.8 109 67.0
Solyc01g107330.4 Solanum lycopersicum HOM05D000827 ORTHO05D001318 3.9e-22 108.2 108 63.0
Nitab4.5_0001480g0030 Nicotiana tabacum HOM05D000827 ORTHO05D001318 5.1e-22 107.8 109 66.1
PGSC0003DMG400009782 Solanum tuberosum HOM05D000827 ORTHO05D001318 5.1e-22 107.8 99 62.6
CSS0048380 Camellia sinensis var. sinensis HOM05D000827 ORTHO05D001318 1.1e-21 106.7 105 61.0
Actinidia04377 Actinidia chinensis HOM05D000827 ORTHO05D001318 1.5e-21 106.3 110 60.0
Sopen10g020980 Solanum pennellii HOM05D000827 ORTHO05D001318 5.7e-21 104.4 99 59.6
PGSC0003DMG400023191 Solanum tuberosum HOM05D000827 ORTHO05D001318 1.7e-20 102.8 100 63.0
Actinidia34382 Actinidia chinensis HOM05D000827 ORTHO05D001318 1.8e-19 99.4 106 59.4
unitig_699.g19872 Utricularia gibba HOM05D005496 ORTHO05D006677 4.1e-19 98.2 103 57.3
unitig_744.g24220 Utricularia gibba HOM05D000827 ORTHO05D001318 1.5e-18 96.3 102 58.8
HanXRQChr16g0509121 Helianthus annuus HOM05D000827 ORTHO05D001318 4.5e-18 94.7 96 56.2
THA.LOC104807230 Tarenaya hassleriana HOM05D000827 ORTHO05D001318 7.7e-18 94.0 102 59.8
THA.LOC104819539 Tarenaya hassleriana HOM05D000827 ORTHO05D001318 1.7e-17 92.8 103 57.3
Ciclev10029545m.g Citrus clementina HOM05D000827 ORTHO05D001318 2.9e-17 92.0 102 59.8
Nn5g30486 Nelumbo nucifera HOM05D000827 ORTHO05D001318 3.8e-17 91.7 101 57.4
TWI31G1098 Tripterygium wilfordii HOM05D000827 ORTHO05D001318 3.8e-17 91.7 101 57.4
AL7G16980 Arabidopsis lyrata HOM05D000827 ORTHO05D001318 5.0e-17 91.3 99 56.6
QL11p032161 Quercus lobata HOM05D000827 ORTHO05D001318 5.0e-17 91.3 101 55.4
Carub.0007s0607 Capsella rubella HOM05D000827 ORTHO05D001318 8.5e-17 90.5 100 57.0
Nn1g04640 Nelumbo nucifera HOM05D000827 ORTHO05D001318 1.1e-16 90.1 96 58.3
A03p62820 Brassica napus HOM05D000827 ORTHO05D001318 1.9e-16 89.4 104 55.8
BraA03t15358Z Brassica rapa HOM05D000827 ORTHO05D001318 1.9e-16 89.4 104 55.8
Gohir.A03G184500 Gossypium hirsutum HOM05D000827 ORTHO05D001318 1.9e-16 89.4 100 55.0
Lsat_1_v5_gn_7_86080 Lactuca sativa HOM05D000827 ORTHO05D001318 2.5e-16 89.0 108 51.9
DCAR_001667 Daucus carota HOM05D000827 ORTHO05D001318 3.2e-16 88.6 106 54.7
Duzib052G0022 Durio zibethinus HOM05D000827 ORTHO05D001318 7.2e-16 87.4 101 56.4
Gohir.D02G206000 Gossypium hirsutum HOM05D000827 ORTHO05D001318 7.2e-16 87.4 99 56.6
Cfa004619 Carpinus fangiana HOM05D000827 ORTHO05D001318 9.4e-16 87.0 101 53.5
Aa31LG8G12940 Aethionema arabicum HOM05D000827 ORTHO05D001318 1.2e-15 86.7 104 53.8
COL.COLO4_32550 Corchorus olitorius HOM05D000827 ORTHO05D001318 1.2e-15 86.7 102 57.8
Thhalv10026522m.g Eutrema salsugineum HOM05D000827 ORTHO05D001318 1.2e-15 86.7 103 57.3
Atru.chr5.2422 Acer truncatum HOM05D000827 ORTHO05D001318 2.1e-15 85.9 100 54.0
Cpa.g.sc200.3 Carica papaya HOM05D000827 ORTHO05D001318 2.1e-15 85.9 108 56.5
Thecc.02G112800 Theobroma cacao HOM05D000827 ORTHO05D001318 2.1e-15 85.9 102 58.8
TWI79G0611 Tripterygium wilfordii HOM05D000827 ORTHO05D001318 3.6e-15 85.1 100 53.0
PGR042G0825 Punica granatum HOM05D000827 ORTHO05D001318 4.7e-15 84.7 107 56.1
TAR381G1509 Trochodendron aralioides HOM05D000827 ORTHO05D001318 4.7e-15 84.7 102 56.9
Gohir.D12G020900 Gossypium hirsutum HOM05D000827 ORTHO05D001318 6.1e-15 84.3 99 53.5
C01p04480 Brassica napus HOM05D000827 ORTHO05D001318 8.0e-15 84.0 104 56.7
BolC1t00434H Brassica oleracea HOM05D000827 ORTHO05D001318 8.0e-15 84.0 104 56.7
Gohir.A12G020600 Gossypium hirsutum HOM05D000827 ORTHO05D001318 8.0e-15 84.0 99 53.5
TAR628G1002 Trochodendron aralioides HOM05D000827 ORTHO05D001318 8.0e-15 84.0 92 54.3
BraA01t00400Z Brassica rapa HOM05D000827 ORTHO05D001318 1.0e-14 83.6 104 56.7
Gorai.008G021200 Gossypium raimondii HOM05D000827 ORTHO05D001318 1.0e-14 83.6 99 53.5
Aqoxy6G02793 Aquilegia oxysepala HOM05D000827 ORTHO05D001318 1.8e-14 82.8 72 65.3
C07p60510 Brassica napus HOM05D000827 ORTHO05D001318 2.3e-14 82.4 104 52.9
BolC7t46483H Brassica oleracea HOM05D000827 ORTHO05D001318 2.3e-14 82.4 104 52.9
Prupe.8G139100 Prunus persica HOM05D000827 ORTHO05D001318 2.3e-14 82.4 101 56.4
CDE06G1156 Ceratophyllum demersum HOM05D000827 ORTHO05D001318 3.0e-14 82.0 83 59.0
Peaxi162Scf00016g02621 Petunia axillaris HOM05D000827 ORTHO05D001318 3.0e-14 82.0 90 60.0
Aa31sc72G70 Aethionema arabicum HOM05D000827 ORTHO05D001318 3.9e-14 81.6 103 53.4
CiPaw.05G014400 Carya illinoinensis HOM05D000827 ORTHO05D001318 3.9e-14 81.6 104 51.9
TAR376G0708 Trochodendron aralioides HOM05D000827 ORTHO05D001318 3.9e-14 81.6 102 59.8
Manes.10G072700 Manihot esculenta HOM05D000827 ORTHO05D001318 5.2e-14 81.3 103 48.5
AT4G34290 Arabidopsis thaliana HOM05D000827 ORTHO05D001318 6.7e-14 80.9 99 53.5
Gorai.005G233400 Gossypium raimondii HOM05D000827 ORTHO05D001318 6.7e-14 80.9 99 53.5
CARHR242480 Cardamine hirsuta HOM05D000827 ORTHO05D001318 8.8e-14 80.5 104 52.9
Eucgr.G01289 Eucalyptus grandis HOM05D000827 ORTHO05D001318 2.0e-13 79.3 104 51.9
AL3G46700 Arabidopsis lyrata HOM05D000827 ORTHO05D001318 3.3e-13 78.6 104 51.0
Thhalv10022904m.g Eutrema salsugineum HOM05D000827 ORTHO05D001318 3.3e-13 78.6 101 51.5
DCAR_021969 Daucus carota HOM05D000827 ORTHO05D001318 4.4e-13 78.2 105 51.4
Carub.0003s2888 Capsella rubella HOM05D000827 ORTHO05D001318 7.4e-13 77.4 105 50.5
BcaC06g30919 Brassica carinata HOM05D000827 ORTHO05D001318 9.7e-13 77.0 58 69.0
CANSAT25G0462 Cannabis sativa HOM05D000827 ORTHO05D001318 1.3e-12 76.6 106 50.9
ATR0661G022 Amborella trichopoda HOM05D000827 ORTHO05D001318 1.7e-12 76.3 62 69.4
RcHm_v2.0_Chr6g0254211 Rosa chinensis HOM05D000827 ORTHO05D001318 2.2e-12 75.9 110 49.1
Sp3g28300 Schrenkiella parvula HOM05D000827 ORTHO05D001318 2.8e-12 75.5 101 50.5
CiPaw.06G167600 Carya illinoinensis HOM05D000827 ORTHO05D001318 4.8e-12 74.7 103 51.5
CDE04G0823 Ceratophyllum demersum HOM05D000827 ORTHO05D001318 6.3e-12 74.3 66 62.1
FvH4_2g04600 Fragaria vesca HOM05D000827 ORTHO05D001318 1.1e-11 73.6 105 47.6
FAN20G2663 Fragaria x ananassa HOM05D000827 ORTHO05D001318 1.4e-11 73.2 105 46.7
Potri.009G092200 Populus trichocarpa HOM05D000827 ORTHO05D001318 1.8e-11 72.8 104 49.0
FAN15G0914 Fragaria x ananassa HOM05D000827 ORTHO05D001318 2.4e-11 72.4 105 46.7
Manes.10G072600 Manihot esculenta HOM05D000827 ORTHO05D001318 2.4e-11 72.4 105 49.5
ATR0618G387 Amborella trichopoda HOM05D000827 ORTHO05D001318 3.1e-11 72.0 84 56.0
BcaC01g00917 Brassica carinata HOM05D000827 ORTHO05D001318 3.1e-11 72.0 104 48.1
ClCG02G006640 Citrullus lanatus HOM05D000827 ORTHO05D001318 3.1e-11 72.0 101 47.5
Duzib132G0744 Durio zibethinus HOM05D000827 ORTHO05D001318 3.1e-11 72.0 105 49.5
Sabra09G0070900 Salix brachista HOM05D000827 ORTHO05D001318 3.1e-11 72.0 104 48.1
AT2G14880 Arabidopsis thaliana HOM05D000827 ORTHO05D001318 4.1e-11 71.6 104 48.1
FAN27G0395 Fragaria x ananassa HOM05D000827 ORTHO05D001318 5.3e-11 71.2 105 46.7
Oeu011145.1 Olea europaea HOM05D001121 ORTHO05D001256 5.3e-11 71.2 39 87.2
FAN24G1876 Fragaria x ananassa HOM05D000827 ORTHO05D001318 9.1e-11 70.5 105 46.7
Os12g0507500 Oryza sativa ssp. japonica HOM05D000827 ORTHO05D001318 1.2e-10 70.1 67 55.2
Actinidia05504 Actinidia chinensis HOM05D000827 ORTHO05D001318 2.6e-10 68.9 39 82.1
DCAR_013509 Daucus carota HOM05D000827 ORTHO05D001318 1.0e-09 67.0 56 67.9
Ah.03g146290 Amaranthus hybridus HOM05D000827 ORTHO05D001318 1.3e-09 66.6 59 61.0
Sc16g0004950 Simmondsia chinensis HOM05D000827 ORTHO05D001318 1.7e-09 66.2 93 51.6
CsaV3_7G007990 Cucumis sativus L. HOM05D000827 ORTHO05D001318 2.2e-09 65.9 62 58.1
Sed0001641 Sechium edule HOM05D000827 ORTHO05D001318 2.2e-09 65.9 106 45.3
PSO541G1858 Papaver somniferum HOM05D000827 ORTHO05D001318 2.9e-09 65.5 42 73.8
PSO675G7513 Papaver somniferum HOM05D000827 ORTHO05D001318 2.9e-09 65.5 42 73.8
MELO3C018505.2 Cucumis melo HOM05D000827 ORTHO05D001318 3.8e-09 65.1 85 50.6
Sabra13G0061500 Salix brachista HOM05D000827 ORTHO05D001318 5.0e-09 64.7 54 61.1
arahy.Tifrunner.gnm1.ann1.4BPU9Y Arachis hypogaea HOM05D000827 ORTHO05D001318 6.5e-09 64.3 103 47.6
arahy.Tifrunner.gnm1.ann1.MJPM8B Arachis hypogaea HOM05D000827 ORTHO05D001318 6.5e-09 64.3 103 47.6
AUR62003961 Chenopodium quinoa HOM05D000827 ORTHO05D001318 1.1e-08 63.5 59 57.6
Potri.013G070600 Populus trichocarpa HOM05D000827 ORTHO05D001318 1.1e-08 63.5 43 65.1
Ca_24348_v3 Cicer arietinum L. HOM05D000827 ORTHO05D001318 1.5e-08 63.2 101 47.5
Lj1g0012448 Lotus japonicus HOM05D000827 ORTHO05D001318 1.5e-08 63.2 90 50.0
CiPaw.12G054400 Carya illinoinensis HOM05D000827 ORTHO05D001318 3.2e-08 62.0 58 50.0
Cc02_g19550 Coffea canephora HOM05D000827 ORTHO05D001318 3.2e-08 62.0 30 93.3
Migut.B01419 Erythranthe guttata HOM05D000827 ORTHO05D001318 3.2e-08 62.0 93 47.3
ECA248G2256 Erigeron canadensis HOM05D000827 ORTHO05D001318 5.5e-08 61.2 60 55.0
Psat4g228120 Pisum sativum HOM05D000827 ORTHO05D001318 7.2e-08 60.8 103 42.7
EL10Ac6g15667 Beta vulgaris HOM05D000827 ORTHO05D001318 9.4e-08 60.5 57 56.1
Lalb_Chr05g0210761 Lupinus albus HOM05D000827 ORTHO05D001318 9.4e-08 60.5 80 50.0
Zm00001eb264760 Zea mays HOM05D000827 ORTHO05D001318 9.4e-08 60.5 85 38.8
AUR62038273 Chenopodium quinoa HOM05D000827 ORTHO05D001318 2.1e-07 59.3 59 52.5
ClCG05G002470 Citrullus lanatus HOM05D000827 ORTHO05D001318 2.7e-07 58.9 57 52.6
Medtr5g005200 Medicago truncatula HOM05D000827 ORTHO05D001318 2.7e-07 58.9 101 42.6
Oeu055157.1 Olea europaea HOM05D000020 ORTHO05D000156 2.7e-07 58.9 30 86.7
Peaxi162Scf00193g00721 Petunia axillaris HOM05D000827 ORTHO05D001318 2.7e-07 58.9 58 55.2
vmacro00092 Vaccinium macrocarpon HOM05D000827 ORTHO05D001318 2.7e-07 58.9 58 53.4
Potri.001G297400 Populus trichocarpa HOM05D000827 ORTHO05D001318 3.6e-07 58.5 104 42.3
Glyma.01G243300 Glycine max HOM05D000827 ORTHO05D001318 4.7e-07 58.2 85 44.7
RcHm_v2.0_Chr1g0340731 Rosa chinensis HOM05D000827 ORTHO05D001318 4.7e-07 58.2 41 58.5
TAR629G0081 Trochodendron aralioides HOM05D000827 ORTHO05D001318 4.7e-07 58.2 58 53.4
A08p16970 Brassica napus HOM05D000827 ORTHO05D001318 6.1e-07 57.8 43 69.8
BraA08t33660Z Brassica rapa HOM05D000827 ORTHO05D001318 6.1e-07 57.8 43 69.8
MD07G1081700 Malus domestica HOM05D000827 ORTHO05D001318 8.0e-07 57.4 95 35.8
Nitab4.5_0000030g0470 Nicotiana tabacum HOM05D000827 ORTHO05D001318 8.0e-07 57.4 63 52.4
Os03g0761000 Oryza sativa ssp. japonica HOM05D000827 ORTHO05D001318 8.0e-07 57.4 41 65.9
Phvul.002G052700 Phaseolus vulgaris HOM05D000827 ORTHO05D001318 1.0e-06 57.0 106 41.5
VMungo1215G3336 Vigna mungo HOM05D000827 ORTHO05D001318 1.0e-06 57.0 82 47.6
Nitab4.5_0002244g0100 Nicotiana tabacum HOM05D000827 ORTHO05D001318 1.4e-06 56.6 43 60.5
Glyma.11G001000 Glycine max HOM05D000827 ORTHO05D001318 1.8e-06 56.2 85 42.4
PSO017G6582 Papaver somniferum HOM05D000827 ORTHO05D001318 2.3e-06 55.8 48 54.2
PSO063G1923 Papaver somniferum HOM05D000827 ORTHO05D001318 2.3e-06 55.8 48 54.2
GSVIVG01036871001 Vitis vinifera HOM05D000827 ORTHO05D001318 2.3e-06 55.8 45 53.3
Zm00001eb231120 Zea mays HOM05D000827 ORTHO05D001318 2.3e-06 55.8 51 49.0
AUR62015622 Chenopodium quinoa HOM05D000827 ORTHO05D001318 3.0e-06 55.5 58 50.0
Manes.09G133600 Manihot esculenta HOM05D000827 ORTHO05D001318 3.0e-06 55.5 88 39.8
Prupe.2G106900 Prunus persica HOM05D000827 ORTHO05D001318 3.0e-06 55.5 57 50.9
Thecc.05G234600 Theobroma cacao HOM05D000827 ORTHO05D001318 3.0e-06 55.5 74 43.2
Actinidia31732 Actinidia chinensis HOM05D000827 ORTHO05D001318 4.0e-06 55.1 63 44.4
CDE02G1634 Ceratophyllum demersum HOM05D000827 ORTHO05D001318 4.0e-06 55.1 65 53.8
MELO3C006211.2 Cucumis melo HOM05D000827 ORTHO05D001318 4.0e-06 55.1 71 45.1
Sopen08g001620 Solanum pennellii HOM05D000827 ORTHO05D001318 4.0e-06 55.1 63 47.6
PGSC0003DMG400018478 Solanum tuberosum HOM05D000827 ORTHO05D001318 4.0e-06 55.1 72 44.4
CAN.G930.2 Capsicum annuum HOM05D000827 ORTHO05D001318 5.2e-06 54.7 79 43.0
CARHR077600 Cardamine hirsuta HOM05D000827 ORTHO05D001318 5.2e-06 54.7 49 59.2
Sed0016100 Sechium edule HOM05D000827 ORTHO05D001318 5.2e-06 54.7 73 45.2
SEGI_40966 Sequoiadendron giganteum HOM05D000827 ORTHO05D001318 5.2e-06 54.7 101 42.6
Solyc08g005590.4 Solanum lycopersicum HOM05D000827 ORTHO05D001318 5.2e-06 54.7 61 49.2
Actinidia27981 Actinidia chinensis HOM05D000827 ORTHO05D001318 6.7e-06 54.3 30 80.0
CSS0035652 Camellia sinensis var. sinensis HOM05D000827 ORTHO05D001318 6.7e-06 54.3 48 52.1
CSS0045636 Camellia sinensis var. sinensis HOM05D000827 ORTHO05D001318 6.7e-06 54.3 48 52.1
Dinv37426 Davidia involucrata HOM05D000827 ORTHO05D001318 6.7e-06 54.3 58 48.3
Nitab4.5_0001175g0150 Nicotiana tabacum HOM05D000827 ORTHO05D001318 6.7e-06 54.3 63 49.2
Peaxi162Scf00907g00019 Petunia axillaris HOM05D000827 ORTHO05D001318 6.7e-06 54.3 50 54.0
Sed0011366 Sechium edule HOM05D000827 ORTHO05D001318 6.7e-06 54.3 82 43.9
ClCG06G000610 Citrullus lanatus HOM05D000827 ORTHO05D001318 8.8e-06 53.9 103 40.8
Gohir.A08G149400 Gossypium hirsutum HOM05D000827 ORTHO05D001318 8.8e-06 53.9 42 61.9
Zm00001eb214330 Zea mays HOM05D000827 ORTHO05D001318 8.8e-06 53.9 47 55.3


User provided reference genes

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