Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.A00639 Erythranthe guttata HOM05D003962 ORTHO05D004714 0.0e+00 2028.1 1267 100.0
MSTRG.25678 Avicennia marina HOM05D003962 ORTHO05D004714 1.9e-293 1013.1 1323 60.1
SalBow1G2835 Salvia bowleyana HOM05D003962 ORTHO05D004714 1.4e-288 996.9 1350 61.0
SalBow1G4038 Salvia bowleyana HOM05D003962 ORTHO05D004714 1.4e-288 996.9 1350 61.0
SGA_v2.0_scaffold305G47981 Striga asiatica HOM05D003962 ORTHO05D004714 3.3e-253 879.4 1322 58.5
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 1.6e-252 877.1 1365 55.6
MSTRG.13886 Avicennia marina HOM05D003962 ORTHO05D004714 3.0e-238 829.7 1334 52.8
Oeu063516.1 Olea europaea HOM05D003962 ORTHO05D004714 1.0e-193 681.8 1373 48.1
CSS0043367 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 1.7e-193 681.0 1342 49.3
Oeu054025.1 Olea europaea HOM05D003962 ORTHO05D004714 9.5e-192 675.2 1358 41.2
Oeu009961.1 Olea europaea HOM05D003962 ORTHO05D004714 1.5e-189 667.9 1348 40.9
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 4.0e-182 643.3 1315 44.6
Cc08_g16110 Coffea canephora HOM05D003962 ORTHO05D004714 9.8e-173 612.1 1352 47.0
Dinv37529 Davidia involucrata HOM05D003962 ORTHO05D004714 6.8e-166 589.3 1125 48.6
Lj2A167T45 Lonicera japonica HOM05D003962 ORTHO05D004714 7.6e-165 585.9 1333 45.1
Solyc08g082410.4 Solanum lycopersicum HOM05D003962 ORTHO05D004714 4.0e-158 563.5 1173 50.0
DCAR_029893 Daucus carota HOM05D003962 ORTHO05D004714 4.4e-157 560.1 1330 46.3
Hma1.2p1_0359F.1_g135210 Hydrangea macrophylla HOM05D003962 ORTHO05D004714 4.4e-157 560.1 1401 44.4
CAN.G1804.9 Capsicum annuum HOM05D003962 ORTHO05D004714 2.1e-154 551.2 1393 46.6
PGSC0003DMG400012278 Solanum tuberosum HOM05D003962 ORTHO05D004714 8.1e-151 539.3 1196 47.6
Oeu058004.1 Olea europaea HOM05D003962 ORTHO05D004714 1.7e-148 531.6 966 53.9
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 7.1e-147 526.2 1352 37.6
Peaxi162Scf00074g00821 Petunia axillaris HOM05D003962 ORTHO05D004714 7.9e-146 522.7 1317 46.6
Nitab4.5_0002944g0030 Nicotiana tabacum HOM05D003962 ORTHO05D004714 9.3e-139 499.2 1361 43.4
CSS0016674 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 3.3e-136 490.7 717 44.9
Nn1g01866 Nelumbo nucifera HOM05D003962 ORTHO05D004714 9.6e-136 489.2 1383 35.6
Actinidia04199 Actinidia chinensis HOM05D003962 ORTHO05D004714 4.2e-131 473.8 1327 42.7
Nitab4.5_0007367g0070 Nicotiana tabacum HOM05D003962 ORTHO05D004714 3.0e-129 467.6 1315 41.0
Actinidia22731 Actinidia chinensis HOM05D003962 ORTHO05D004714 2.5e-128 464.5 753 43.8
Rhsim02G0244100 Rhododendron simsii HOM05D003962 ORTHO05D004714 2.5e-128 464.5 1442 41.8
vmacro11467 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.4e-123 448.7 1430 40.6
unitig_0.g2842 Utricularia gibba HOM05D003962 ORTHO05D004714 3.0e-121 441.0 949 48.8
TAR374G0911 Trochodendron aralioides HOM05D003962 ORTHO05D004714 6.9e-110 403.3 1374 32.0
CSS0006905 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 2.6e-104 384.8 637 40.2
Nn3g19007 Nelumbo nucifera HOM05D003962 ORTHO05D004714 2.2e-103 381.7 1231 34.6
TAR636G0021 Trochodendron aralioides HOM05D003962 ORTHO05D004714 3.8e-100 370.9 1390 32.3
Rhsim02G0244200 Rhododendron simsii HOM05D003962 ORTHO05D004714 1.1e-99 369.4 1507 37.6
TAR629G3347 Trochodendron aralioides HOM05D003962 ORTHO05D004714 6.1e-98 363.6 806 36.4
ECA246G1296 Erigeron canadensis HOM05D003962 ORTHO05D004714 1.4e-97 362.5 1341 38.6
Nitab4.5_0006775g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 2.3e-97 361.7 1360 41.1
Actinidia27315 Actinidia chinensis HOM05D003962 ORTHO05D004714 4.8e-95 354.0 1293 33.9
Thecc.03G196300 Theobroma cacao HOM05D003962 ORTHO05D004714 1.1e-94 352.8 803 35.5
Aqoxy7G00097 Aquilegia oxysepala HOM05D003962 ORTHO05D004714 5.3e-94 350.5 1411 30.0
vmacro11361 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.3e-92 345.9 832 35.3
Manes.14G006600 Manihot esculenta HOM05D003962 ORTHO05D004714 6.5e-92 343.6 818 37.0
PSO170G0250 Papaver somniferum HOM05D003962 ORTHO05D004714 2.1e-90 338.6 1142 32.3
HanXRQChr17g0534811 Helianthus annuus HOM05D003962 ORTHO05D004714 6.8e-89 333.6 1319 35.4
Nitab4.5_0001210g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 4.4e-88 330.9 1342 40.9
Potri.012G013800 Populus trichocarpa HOM05D003962 ORTHO05D004714 2.4e-86 325.1 803 36.2
Potri.015G014800 Populus trichocarpa HOM05D003962 ORTHO05D004714 3.1e-86 324.7 815 36.2
Atru.chr1.164 Acer truncatum HOM05D003962 ORTHO05D004714 5.4e-86 323.9 819 35.0
PSO063G5170 Papaver somniferum HOM05D003962 ORTHO05D004714 1.0e-84 319.7 1142 31.3
MD07G1290200 Malus domestica HOM05D003962 ORTHO05D004714 2.1e-82 312.0 822 34.7
HanXRQChr06g0166431 Helianthus annuus HOM05D003962 ORTHO05D004714 5.2e-81 307.4 746 37.0
Duzib205G1416 Durio zibethinus HOM05D003962 ORTHO05D004714 1.2e-80 306.2 813 34.8
TWI23G0430 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 3.7e-79 301.2 1387 31.8
Sabra12G0018000 Salix brachista HOM05D003962 ORTHO05D004714 6.3e-79 300.4 715 35.9
unitig_88.g27642 Utricularia gibba HOM05D003962 ORTHO05D004714 8.3e-79 300.1 593 38.8
Sabra15G0011900 Salix brachista HOM05D003962 ORTHO05D004714 1.1e-78 299.7 818 34.6
PSO135G0074 Papaver somniferum HOM05D003962 ORTHO05D004714 7.0e-78 297.0 700 34.6
COL.COLO4_11264 Corchorus olitorius HOM05D003962 ORTHO05D004714 9.2e-78 296.6 1356 28.9
TAR375G1139 Trochodendron aralioides HOM05D003962 ORTHO05D004714 9.2e-78 296.6 723 34.6
TWI14G0330 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 1.2e-77 296.2 1379 32.1
PSO384G0521 Papaver somniferum HOM05D003962 ORTHO05D004714 2.0e-77 295.4 699 34.3
Duzib205G1946 Durio zibethinus HOM05D003962 ORTHO05D004714 8.6e-76 290.0 1345 34.4
MBI06_g08468_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 1.1e-75 289.7 1341 34.5
Cfa016250 Carpinus fangiana HOM05D003962 ORTHO05D004714 1.9e-75 288.9 1349 35.5
Duzib084G0525 Durio zibethinus HOM05D003962 ORTHO05D004714 3.3e-75 288.1 1368 30.8
CiPaw.05G251700 Carya illinoinensis HOM05D003962 ORTHO05D004714 5.6e-75 287.3 1345 34.6
Ciclev10004179m.g Citrus clementina HOM05D003962 ORTHO05D004714 1.2e-74 286.2 1347 32.6
QL09p009481 Quercus lobata HOM05D003962 ORTHO05D004714 1.6e-74 285.8 1365 35.2
MD01G1219900 Malus domestica HOM05D003962 ORTHO05D004714 2.1e-74 285.4 1359 34.4
Cpa.g.sc3.71 Carica papaya HOM05D003962 ORTHO05D004714 2.3e-73 282.0 1362 35.8
Gohir.A11G014500 Gossypium hirsutum HOM05D003962 ORTHO05D004714 2.0e-72 278.9 803 32.5
RcHm_v2.0_Chr1g0380961 Rosa chinensis HOM05D003962 ORTHO05D004714 3.4e-72 278.1 765 34.9
CANSAT21G2091 Cannabis sativa HOM05D003962 ORTHO05D004714 9.8e-72 276.6 1368 33.8
FvH4_7g31740 Fragaria vesca HOM05D003962 ORTHO05D004714 1.3e-71 276.2 817 33.2
Glyma.04G236700 Glycine max HOM05D003962 ORTHO05D004714 1.3e-71 276.2 810 32.6
Phvul.009G053600 Phaseolus vulgaris HOM05D003962 ORTHO05D004714 3.7e-71 274.6 815 33.0
Gorai.007G015000 Gossypium raimondii HOM05D003962 ORTHO05D004714 8.3e-71 273.5 1349 34.0
Lalb_Chr08g0240331 Lupinus albus HOM05D003962 ORTHO05D004714 8.3e-71 273.5 800 32.1
Ca_16697_v3 Cicer arietinum L. HOM05D003962 ORTHO05D004714 1.6e-69 269.2 880 33.3
FAN01G0781 Fragaria x ananassa HOM05D003962 ORTHO05D004714 2.0e-69 268.9 811 33.4
FAN03G1461 Fragaria x ananassa HOM05D003962 ORTHO05D004714 4.6e-69 267.7 820 33.2
Duzib068G0757 Durio zibethinus HOM05D003962 ORTHO05D004714 1.0e-68 266.5 1349 33.0
Manes.06G159800 Manihot esculenta HOM05D003962 ORTHO05D004714 1.3e-68 266.2 1346 31.4
FAN06G4230 Fragaria x ananassa HOM05D003962 ORTHO05D004714 3.0e-68 265.0 817 32.6
FAN06G4429 Fragaria x ananassa HOM05D003962 ORTHO05D004714 3.0e-68 265.0 817 32.8
Lalb_Chr23g0271551 Lupinus albus HOM05D003962 ORTHO05D004714 3.0e-68 265.0 798 32.8
VMungo1309G1284 Vigna mungo HOM05D003962 ORTHO05D004714 1.5e-67 262.7 1355 29.9
CiPaw.06G010000 Carya illinoinensis HOM05D003962 ORTHO05D004714 4.3e-67 261.2 1358 34.9
Glyma.06G127600 Glycine max HOM05D003962 ORTHO05D004714 4.3e-67 261.2 817 32.6
MBI07_g07101_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 8.0e-66 256.9 1314 30.0
TWI39G0414 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 1.1e-65 256.5 1365 33.6
Haze_00190 Corylus avellana HOM05D003962 ORTHO05D004714 1.4e-65 256.1 904 31.3
Gohir.D11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 2.3e-65 255.4 1345 32.8
Gohir.D11G014700 Gossypium hirsutum HOM05D003962 ORTHO05D004714 2.0e-64 252.3 1347 31.0
Eucgr.A01465 Eucalyptus grandis HOM05D003962 ORTHO05D004714 1.7e-63 249.2 1347 30.6
Gohir.A11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 1.1e-62 246.5 1347 32.3
Medtr3g091280 Medicago truncatula HOM05D003962 ORTHO05D004714 1.2e-61 243.0 803 30.0
EL10Ac3g05299 Beta vulgaris HOM05D003962 ORTHO05D004714 1.0e-60 240.0 1332 31.5
Prupe.2G311300 Prunus persica HOM05D003962 ORTHO05D004714 2.5e-59 235.3 1351 33.9
Gorai.007G015100 Gossypium raimondii HOM05D003962 ORTHO05D004714 2.8e-58 231.9 487 35.1
Ah.07g205820 Amaranthus hybridus HOM05D003962 ORTHO05D004714 6.2e-58 230.7 794 31.5
Psat5g078120 Pisum sativum HOM05D003962 ORTHO05D004714 6.2e-58 230.7 814 31.2
BcaC01g06252 Brassica carinata HOM05D003962 ORTHO05D004714 8.1e-58 230.3 658 31.6
BraA03t10810Z Brassica rapa HOM05D003962 ORTHO05D004714 1.4e-57 229.6 658 32.4
BolC3t14179H Brassica oleracea HOM05D003962 ORTHO05D004714 1.8e-57 229.2 674 31.8
GSVIVG01038709001 Vitis vinifera HOM05D003962 ORTHO05D004714 5.2e-57 227.6 1373 32.2
A03p15150 Brassica napus HOM05D003962 ORTHO05D004714 1.2e-56 226.5 656 32.2
C03p17680 Brassica napus HOM05D003962 ORTHO05D004714 2.0e-56 225.7 658 31.2
AUR62006109 Chenopodium quinoa HOM05D003962 ORTHO05D004714 4.4e-56 224.6 1337 28.5
Lalb_Chr11g0066791 Lupinus albus HOM05D003962 ORTHO05D004714 4.4e-56 224.6 816 29.8
BcaNung06205 Brassica carinata HOM05D003962 ORTHO05D004714 5.8e-56 224.2 518 34.7
TPR.G17287 Trifolium pratense HOM05D003962 ORTHO05D004714 5.8e-56 224.2 843 29.1
THA.LOC104800296 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 1.9e-54 219.2 1161 30.1
Lsat_1_v5_gn_3_10880 Lactuca sativa HOM05D003962 ORTHO05D004714 3.2e-54 218.4 1254 32.4
Carub.0008s1360 Capsella rubella HOM05D003962 ORTHO05D004714 4.1e-54 218.0 707 31.1
Os01g0655400 Oryza sativa ssp. japonica HOM05D003962 ORTHO05D004714 5.4e-54 217.6 665 31.4
FAN10G2253 Fragaria x ananassa HOM05D003962 ORTHO05D004714 9.2e-54 216.9 1356 33.6
FAN10G3613 Fragaria x ananassa HOM05D003962 ORTHO05D004714 4.6e-53 214.5 1355 33.5
PGR042G1008 Punica granatum HOM05D003962 ORTHO05D004714 1.7e-52 212.6 1331 30.6
Sed0017272 Sechium edule HOM05D003962 ORTHO05D004714 1.7e-52 212.6 831 29.0
Ah.13g070110 Amaranthus hybridus HOM05D003962 ORTHO05D004714 4.3e-51 208.0 1323 31.8
THA.LOC104825141 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 2.1e-50 205.7 568 32.9
Thhalv10012484m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 1.1e-49 203.4 692 30.6
AT5G53440 Arabidopsis thaliana HOM05D003962 ORTHO05D004714 1.8e-49 202.6 833 28.1
DCAR_006489 Daucus carota HOM05D003962 ORTHO05D004714 1.8e-49 202.6 1332 30.3
Lj1g0008504 Lotus japonicus HOM05D003962 ORTHO05D004714 1.8e-49 202.6 1274 30.3
Sp6g15570 Schrenkiella parvula HOM05D003962 ORTHO05D004714 3.4e-48 198.4 1336 32.0
CARHR266560 Cardamine hirsuta HOM05D003962 ORTHO05D004714 1.4e-46 193.0 686 28.4
ATR0602G039 Amborella trichopoda HOM05D003962 ORTHO05D004714 3.5e-45 188.3 848 29.7
ClCG01G000470 Citrullus lanatus HOM05D003962 ORTHO05D004714 1.3e-44 186.4 1367 29.1
Zm00001eb359440 Zea mays HOM05D003962 ORTHO05D004714 6.6e-44 184.1 919 28.4
Sed0023111 Sechium edule HOM05D003962 ORTHO05D004714 8.7e-44 183.7 1354 26.9
SHI02385 Sapria himalayana HOM05D003962 ORTHO05D004714 1.5e-43 183.0 491 32.6
arahy.Tifrunner.gnm1.ann1.JYM9I0 Arachis hypogaea HOM05D003962 ORTHO05D004714 3.3e-43 181.8 1351 25.6
HPP92_024026 Vanilla planifolia HOM05D003962 ORTHO05D004714 3.3e-43 181.8 712 28.7
Prupe.5G120600 Prunus persica HOM05D003962 ORTHO05D004714 2.1e-42 179.1 1344 34.8
MELO3C005882.2 Cucumis melo HOM05D003962 ORTHO05D004714 1.4e-41 176.4 1378 28.1
CsaV3_5G000540 Cucumis sativus L. HOM05D003962 ORTHO05D004714 1.4e-41 176.4 1356 28.4
arahy.Tifrunner.gnm1.ann1.897SEY Arachis hypogaea HOM05D003962 ORTHO05D004714 2.4e-41 175.6 1339 27.7
Sc19g0000840 Simmondsia chinensis HOM05D003962 ORTHO05D004714 9.0e-41 173.7 1257 30.0
AUR62019379 Chenopodium quinoa HOM05D003962 ORTHO05D004714 2.0e-40 172.6 1334 26.0
Aa31sc139G70 Aethionema arabicum HOM05D003962 ORTHO05D004714 9.9e-40 170.2 1113 34.9
AL8G28140 Arabidopsis lyrata HOM05D003962 ORTHO05D004714 9.9e-40 170.2 1363 30.7
Zm00001eb158050 Zea mays HOM05D003962 ORTHO05D004714 4.9e-39 167.9 651 30.6
Thhalv10026934m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 2.1e-34 152.5 738 29.4
ECA233G2741 Erigeron canadensis HOM05D003962 ORTHO05D004714 3.4e-32 145.2 648 29.0
CDE10G1062 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 3.8e-31 141.7 745 25.0
vmacro11466 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 2.4e-30 139.0 345 38.6
CDE10G0926 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 9.3e-30 137.1 686 24.8
vmacro11360 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 2.4e-25 122.5 383 34.7
CDE09G1087 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 7.6e-24 117.5 786 26.0
Sc25g0000880 Simmondsia chinensis HOM05D003962 ORTHO05D004714 7.6e-24 117.5 1246 26.7
TAR375G1118 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.7e-23 116.3 318 35.2
TAR629G3239 Trochodendron aralioides HOM05D003962 ORTHO05D004714 9.3e-22 110.5 272 38.6
unitig_88.g27643 Utricularia gibba HOM05D003962 ORTHO05D004714 1.1e-19 103.6 135 48.1
unitig_0.g2843 Utricularia gibba HOM05D047057 ORTHO05D004714 4.8e-18 98.2 252 36.5
vmacro11359 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 7.6e-16 90.9 202 31.7
vmacro11465 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 7.6e-16 90.9 202 31.7
CDE02G1812 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.9e-11 76.3 1327 24.0
HanXRQChr07g0190851 Helianthus annuus HOM05D003962 ORTHO05D004714 4.3e-11 75.1 103 43.7
SHI02387 Sapria himalayana HOM05D003962 ORTHO05D004714 5.3e-09 68.2 195 33.8
SEGI_14221 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 6.9e-09 67.8 1279 25.5
SEGI_41344 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 6.9e-09 67.8 646 22.6


User provided reference genes

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