Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.A00633 Erythranthe guttata HOM05D005115 ORTHO05D005703 1.0e-92 343.6 201 100.0
Solyc08g008350.3 Solanum lycopersicum HOM05D005115 ORTHO05D005703 2.3e-52 209.5 200 64.5
Nitab4.5_0002231g0060 Nicotiana tabacum HOM05D005115 ORTHO05D005703 1.5e-51 206.8 227 58.1
Peaxi162Scf00102g01844 Petunia axillaris HOM05D005115 ORTHO05D005703 7.5e-51 204.5 200 63.5
Dinv37526 Davidia involucrata HOM05D005115 ORTHO05D005703 2.9e-50 202.6 200 63.0
Nitab4.5_0007367g0090 Nicotiana tabacum HOM05D005115 ORTHO05D005703 3.7e-50 202.2 227 57.3
Cc08_g16140 Coffea canephora HOM05D005115 ORTHO05D005703 4.9e-50 201.8 200 61.0
Oeu055028.2 Olea europaea HOM05D005115 ORTHO05D005703 6.4e-50 201.4 251 52.6
Rhsim02G0244500 Rhododendron simsii HOM05D005115 ORTHO05D005703 1.3e-47 193.7 206 59.2
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 8.6e-47 191.0 183 63.9
Duzib205G0660 Durio zibethinus HOM05D005115 ORTHO05D005703 2.8e-45 186.0 209 59.8
Cfa011998 Carpinus fangiana HOM05D005115 ORTHO05D005703 1.8e-44 183.3 206 56.3
vmacro11350 Vaccinium macrocarpon HOM05D005115 ORTHO05D005703 2.3e-44 183.0 248 51.2
Gohir.A09G190300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.5e-43 180.3 213 57.3
CiPaw.11G120600 Carya illinoinensis HOM05D005115 ORTHO05D005703 2.0e-43 179.9 205 55.1
Thecc.03G298900 Theobroma cacao HOM05D005115 ORTHO05D005703 7.5e-43 177.9 212 57.1
Hma1.2p1_0440F.1_g153350 Hydrangea macrophylla HOM05D005115 ORTHO05D005703 1.7e-42 176.8 186 60.8
Duzib068G0330 Durio zibethinus HOM05D005115 ORTHO05D005703 3.7e-42 175.6 209 54.5
Glyma.11G017800 Glycine max HOM05D005115 ORTHO05D005703 3.7e-42 175.6 208 54.3
Glyma.01G225300 Glycine max HOM05D005115 ORTHO05D005703 4.9e-42 175.3 208 54.3
Gorai.006G207500 Gossypium raimondii HOM05D005115 ORTHO05D005703 1.1e-41 174.1 212 56.1
Phvul.002G164100 Phaseolus vulgaris HOM05D005115 ORTHO05D005703 1.1e-41 174.1 209 52.6
Gohir.D09G185000 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.4e-41 173.7 211 52.1
Duzib084G1297 Durio zibethinus HOM05D005115 ORTHO05D005703 4.1e-41 172.2 212 57.1
TAR375G0477 Trochodendron aralioides HOM05D005115 ORTHO05D005703 2.1e-40 169.9 191 57.6
TAR375G0257 Trochodendron aralioides HOM05D005115 ORTHO05D005703 3.5e-40 169.1 193 62.2
VMungo1215G1874 Vigna mungo HOM05D005115 ORTHO05D005703 7.8e-40 167.9 208 52.9
MSTRG.25681 Avicennia marina HOM05D005115 ORTHO05D005703 5.1e-39 165.2 124 76.6
CiPaw.12G082200 Carya illinoinensis HOM05D005115 ORTHO05D005703 6.6e-39 164.9 206 52.4
arahy.Tifrunner.gnm1.ann1.V4I9JE Arachis hypogaea HOM05D005115 ORTHO05D005703 8.6e-39 164.5 208 54.3
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 1.9e-38 163.3 206 53.4
SalBow6G1704 Salvia bowleyana HOM05D005115 ORTHO05D005703 2.5e-38 162.9 273 44.0
SalBow8G0540 Salvia bowleyana HOM05D005115 ORTHO05D005703 2.5e-38 162.9 273 44.0
LjContig00312_ERROPOS870357g0004531 Lotus japonicus HOM05D005115 ORTHO05D005703 3.3e-38 162.5 208 51.4
Actinidia22166 Actinidia chinensis HOM05D005115 ORTHO05D005703 7.3e-38 161.4 194 60.3
Medtr8g099425 Medicago truncatula HOM05D005115 ORTHO05D005703 9.5e-38 161.0 215 54.9
CSS0002161 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 1.2e-37 160.6 123 74.8
CSS0007380 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 1.2e-37 160.6 123 74.8
arahy.Tifrunner.gnm1.ann1.M14U5A Arachis hypogaea HOM05D005115 ORTHO05D005703 1.6e-37 160.2 209 53.6
TWI15G1136 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 2.1e-37 159.8 207 51.7
TWI81G0084 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 6.2e-37 158.3 216 50.0
Sed0016945 Sechium edule HOM05D005115 ORTHO05D005703 1.1e-36 157.5 212 50.0
Gohir.A11G025300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.3e-36 156.4 208 50.5
Cpa.g.sc79.29 Carica papaya HOM05D005115 ORTHO05D005703 5.2e-36 155.2 210 51.0
Gorai.007G026700 Gossypium raimondii HOM05D005115 ORTHO05D005703 5.2e-36 155.2 208 50.0
Gohir.D11G024900 Gossypium hirsutum HOM05D005115 ORTHO05D005703 8.9e-36 154.5 208 50.0
TPR.G3414 Trifolium pratense HOM05D005115 ORTHO05D005703 8.9e-36 154.5 211 53.6
ClCG07G011580 Citrullus lanatus HOM05D005115 ORTHO05D005703 1.2e-35 154.1 186 54.8
Prupe.5G120800 Prunus persica HOM05D005115 ORTHO05D005703 3.4e-35 152.5 207 51.7
Aqoxy7G00093 Aquilegia oxysepala HOM05D005115 ORTHO05D005703 5.8e-35 151.8 188 55.3
CsaV3_4G006640 Cucumis sativus L. HOM05D005115 ORTHO05D005703 5.8e-35 151.8 195 52.8
HanXRQChr03g0083441 Helianthus annuus HOM05D005115 ORTHO05D005703 5.8e-35 151.8 196 52.0
Eucgr.D01748 Eucalyptus grandis HOM05D005115 ORTHO05D005703 7.5e-35 151.4 210 50.5
Manes.02G009400 Manihot esculenta HOM05D005115 ORTHO05D005703 9.9e-35 151.0 213 53.5
Sc22g0004980 Simmondsia chinensis HOM05D005115 ORTHO05D005703 1.3e-34 150.6 202 49.5
FAN18G1353 Fragaria x ananassa HOM05D005115 ORTHO05D005703 6.4e-34 148.3 203 50.2
ECA240G1127 Erigeron canadensis HOM05D005115 ORTHO05D005703 1.4e-33 147.1 204 47.1
Sopen08g004230 Solanum pennellii HOM05D005115 ORTHO05D005703 1.9e-33 146.7 123 69.1
PGSC0003DMG400005793 Solanum tuberosum HOM05D005115 ORTHO05D005703 1.9e-33 146.7 123 69.9
CANSAT21G0870 Cannabis sativa HOM05D005115 ORTHO05D005703 3.2e-33 146.0 231 50.2
ECA240G3401 Erigeron canadensis HOM05D000003 ORTHO05D000004 5.4e-33 145.2 207 49.8
Ca_17482_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 7.1e-33 144.8 214 48.1
Ca_17506_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 7.1e-33 144.8 214 48.1
PGR031G1480 Punica granatum HOM05D005115 ORTHO05D005703 7.1e-33 144.8 182 51.1
FvH4_5g04680 Fragaria vesca HOM05D005115 ORTHO05D005703 9.2e-33 144.4 203 49.3
CAN.G792.37 Capsicum annuum HOM05D005115 ORTHO05D005703 1.2e-32 144.1 123 68.3
Atru.chr9.1972 Acer truncatum HOM05D005115 ORTHO05D005703 1.6e-32 143.7 190 54.7
Atru.chr9.1986 Acer truncatum HOM05D005115 ORTHO05D005703 1.6e-32 143.7 190 54.7
Potri.003G140700 Populus trichocarpa HOM05D005115 ORTHO05D005703 2.1e-32 143.3 205 48.8
PGR042G1877 Punica granatum HOM05D005115 ORTHO05D005703 2.1e-32 143.3 204 50.0
GSVIVG01019540001 Vitis vinifera HOM05D005115 ORTHO05D005703 2.7e-32 142.9 125 67.2
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 6.0e-32 141.7 197 50.8
AUR62010847 Chenopodium quinoa HOM05D000034 ORTHO05D005703 1.3e-31 140.6 204 46.6
Lsat_1_v5_gn_6_83921 Lactuca sativa HOM05D005115 ORTHO05D005703 1.3e-31 140.6 212 47.6
Haze_09072 Corylus avellana HOM05D005115 ORTHO05D005703 1.7e-31 140.2 134 61.2
unitig_0.g2839 Utricularia gibba HOM05D005115 ORTHO05D005703 1.7e-31 140.2 141 56.7
PSO384G2123 Papaver somniferum HOM05D005115 ORTHO05D005703 2.3e-31 139.8 199 51.3
Potri.001G090900 Populus trichocarpa HOM05D005115 ORTHO05D005703 3.9e-31 139.0 206 50.5
TAR636G3146 Trochodendron aralioides HOM05D005115 ORTHO05D005703 3.9e-31 139.0 132 62.1
PSO135G0387 Papaver somniferum HOM05D005115 ORTHO05D005703 1.9e-30 136.7 198 50.5
Sabra01G0067300 Salix brachista HOM05D005115 ORTHO05D005703 3.3e-30 136.0 204 49.5
FAN13G0546 Fragaria x ananassa HOM05D005115 ORTHO05D005703 5.6e-30 135.2 203 46.3
FAN13G3196 Fragaria x ananassa HOM05D005115 ORTHO05D005703 5.6e-30 135.2 203 46.3
CDE04G3646 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 2.1e-29 133.3 172 50.6
HanXRQChr13g0415351 Helianthus annuus HOM05D005115 ORTHO05D005703 2.8e-29 132.9 168 53.0
Hund14216 Selenicereus undatus HOM05D005115 ORTHO05D005703 4.7e-29 132.1 207 45.4
RcHm_v2.0_Chr7g0194701 Rosa chinensis HOM05D005115 ORTHO05D005703 8.1e-29 131.3 189 54.0
MBI06_g08472_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 1.4e-28 130.6 192 49.5
THA.LOC104815118 Tarenaya hassleriana HOM05D005115 ORTHO05D005703 2.4e-28 129.8 200 48.0
Carub.0006s2972 Capsella rubella HOM05D005115 ORTHO05D005703 3.1e-28 129.4 212 42.5
AL6G45070 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 8.9e-28 127.9 219 47.9
COL.COLO4_10710 Corchorus olitorius HOM05D005115 ORTHO05D005703 1.2e-27 127.5 127 59.1
AT4G10970 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 4.4e-27 125.6 217 47.5
BcaC01g04648 Brassica carinata HOM05D005115 ORTHO05D005703 1.7e-26 123.6 216 41.7
Psat7g026000 Pisum sativum HOM05D005115 ORTHO05D005703 2.2e-26 123.2 122 59.0
Thhalv10028955m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 1.4e-25 120.6 229 39.3
CARHR255630 Cardamine hirsuta HOM05D005115 ORTHO05D005703 4.2e-25 119.0 236 39.8
AUR62019846 Chenopodium quinoa HOM05D005115 ORTHO05D005703 5.4e-25 118.6 139 52.5
C03p35310 Brassica napus HOM05D005115 ORTHO05D005703 7.1e-25 118.2 225 40.4
BcaB01g02726 Brassica carinata HOM05D005115 ORTHO05D005703 9.2e-25 117.9 227 38.3
EL10Ac5g12921 Beta vulgaris HOM05D005115 ORTHO05D005703 1.2e-24 117.5 261 38.3
Sed0001802 Sechium edule HOM05D005115 ORTHO05D005703 2.1e-24 116.7 214 45.8
Sp6g06500 Schrenkiella parvula HOM05D005115 ORTHO05D005703 4.6e-24 115.5 218 39.4
HPP92_002918 Vanilla planifolia HOM05D005115 ORTHO05D005703 1.3e-23 114.0 191 43.5
MELO3C016298.2 Cucumis melo HOM05D005115 ORTHO05D005703 2.3e-23 113.2 232 41.4
Aa31LG9G11140 Aethionema arabicum HOM05D005115 ORTHO05D005703 4.3e-22 109.0 270 33.7
Hund11387 Selenicereus undatus HOM05D005115 ORTHO05D005703 7.3e-22 108.2 116 57.8
MD06G1108200 Malus domestica HOM05D005115 ORTHO05D005703 1.2e-21 107.5 100 62.0
MBI07_g07104_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 2.8e-21 106.3 181 46.4
BolC3t15841H Brassica oleracea HOM05D005115 ORTHO05D005703 3.6e-21 105.9 124 52.4
CDE03G0211 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 6.2e-21 105.1 158 46.2
A03p29200 Brassica napus HOM05D005115 ORTHO05D005703 1.8e-20 103.6 251 36.7
Lalb_Chr05g0211561 Lupinus albus HOM05D005115 ORTHO05D005703 7.6e-19 98.2 101 54.5
Sabra03G0101600 Salix brachista HOM05D000906 ORTHO05D000713 7.6e-19 98.2 295 33.2
AT4G23910 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 6.4e-18 95.1 176 39.8
SHI06967 Sapria himalayana HOM05D005115 ORTHO05D005703 5.4e-17 92.0 116 46.6
Os08g0374200 Oryza sativa ssp. japonica HOM05D005115 ORTHO05D005703 1.2e-16 90.9 112 51.8
Thhalv10026287m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 2.1e-16 90.1 204 38.2
Sp7g21880 Schrenkiella parvula HOM05D005115 ORTHO05D005703 2.1e-16 90.1 204 36.8
AL7G29420 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 2.7e-16 89.7 176 39.8
Gohir.D12G237999 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.7e-16 89.7 112 51.8
Gohir.D12G238133 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.7e-16 89.7 112 51.8
Gorai.008G254900 Gossypium raimondii HOM05D005115 ORTHO05D005703 2.7e-16 89.7 112 51.8
BcaNung01098 Brassica carinata HOM05D005115 ORTHO05D005703 3.0e-15 86.3 205 33.7
A01p15220 Brassica napus HOM05D005115 ORTHO05D005703 3.0e-15 86.3 203 36.0
Zm00001eb042700 Zea mays HOM05D005115 ORTHO05D005703 8.7e-15 84.7 109 48.6
SEGI_32593 Sequoiadendron giganteum HOM05D005115 ORTHO05D005703 2.5e-14 83.2 189 41.3
ATR0602G161 Amborella trichopoda HOM05D005115 ORTHO05D005703 5.6e-14 82.0 111 48.6
Zm00001eb178470 Zea mays HOM05D005115 ORTHO05D005703 7.3e-14 81.6 188 35.6
Carub.0007s1718 Capsella rubella HOM05D005115 ORTHO05D005703 2.1e-13 80.1 170 38.2
arahy.Tifrunner.gnm1.ann1.ULQ1VN Arachis hypogaea HOM05D005115 ORTHO05D005703 2.8e-13 79.7 75 60.0
C01p19150 Brassica napus HOM05D005115 ORTHO05D005703 4.8e-13 79.0 124 41.9
BcaC09g50931 Brassica carinata HOM05D005115 ORTHO05D005703 1.8e-12 77.0 131 42.0
BolC1t01841H Brassica oleracea HOM05D005115 ORTHO05D005703 1.8e-12 77.0 124 41.1
CARHR231320 Cardamine hirsuta HOM05D005115 ORTHO05D005703 1.8e-12 77.0 125 43.2
DCAR_029907 Daucus carota HOM05D005115 ORTHO05D005703 1.8e-12 77.0 73 60.3
BraA01t01460Z Brassica rapa HOM05D005115 ORTHO05D005703 3.1e-12 76.3 126 39.7
Oeu029936.1 Olea europaea HOM05D005115 ORTHO05D005703 1.9e-09 67.0 46 78.3
Lsat_1_v5_gn_1_118201 Lactuca sativa HOM05D009751 ORTHO05D005703 4.6e-08 62.4 70 52.9
Lsat_1_v5_gn_8_68541 Lactuca sativa HOM05D005115 ORTHO05D018183 3.0e-07 59.7 90 43.3
Gohir.A12G236850 Gossypium hirsutum HOM05D005115 ORTHO05D005703 6.7e-07 58.5 112 43.8
FAN04G1053 Fragaria x ananassa HOM05D005115 ORTHO05D005703 1.1e-06 57.8 48 64.6


User provided reference genes

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