Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.A00508 Erythranthe guttata HOM05D004572 ORTHO05D005425 4.4e-256 887.5 454 100.0
MSTRG.11833 Avicennia marina HOM05D004572 ORTHO05D005425 7.1e-166 587.8 464 68.1
SalBow4G0115 Salvia bowleyana HOM05D004572 ORTHO05D005425 1.1e-150 537.3 471 64.5
SGA_v2.0_scaffold27G11714 Striga asiatica HOM05D004572 ORTHO05D005425 7.4e-139 498.0 456 59.0
Oeu028098.1 Olea europaea HOM05D004572 ORTHO05D005425 4.7e-133 478.8 473 58.1
unitig_748.g8160 Utricularia gibba HOM05D004572 ORTHO05D005425 2.0e-131 473.4 458 57.6
Nitab4.5_0001131g0030 Nicotiana tabacum HOM05D004572 ORTHO05D005425 1.7e-111 407.1 487 49.7
Cc04_g13510 Coffea canephora HOM05D004572 ORTHO05D005425 5.5e-110 402.1 489 50.3
Nitab4.5_0000907g0020 Nicotiana tabacum HOM05D004572 ORTHO05D005425 1.6e-109 400.6 489 48.5
Cc04_g13460 Coffea canephora HOM05D004572 ORTHO05D005425 5.2e-108 395.6 488 50.0
PGSC0003DMG400029573 Solanum tuberosum HOM05D004572 ORTHO05D005425 2.6e-107 393.3 491 48.5
Sopen08g023180 Solanum pennellii HOM05D004572 ORTHO05D005425 5.7e-107 392.1 492 48.2
TWI32G1304 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 9.8e-107 391.3 483 48.2
Solyc08g074570.1 Solanum lycopersicum HOM05D004572 ORTHO05D005425 1.3e-106 391.0 492 48.0
Peaxi162Scf00445g00102 Petunia axillaris HOM05D004572 ORTHO05D005425 8.3e-106 388.3 487 48.3
Ah.08g210120 Amaranthus hybridus HOM05D004572 ORTHO05D005425 1.1e-105 387.9 484 47.9
THA.LOC104815806 Tarenaya hassleriana HOM05D004572 ORTHO05D005425 2.0e-104 383.6 482 48.1
Thecc.04G269400 Theobroma cacao HOM05D004572 ORTHO05D005425 5.9e-104 382.1 483 48.7
Dinv09440 Davidia involucrata HOM05D004572 ORTHO05D005425 1.7e-103 380.6 501 48.3
VMungo0720G3103 Vigna mungo HOM05D004572 ORTHO05D005425 2.9e-103 379.8 494 47.4
Hund14323 Selenicereus undatus HOM05D004572 ORTHO05D005425 8.6e-103 378.3 494 47.4
Rhsim01G0089200 Rhododendron simsii HOM05D004572 ORTHO05D005425 3.3e-102 376.3 500 47.2
DCAR_023418 Daucus carota HOM05D004572 ORTHO05D005425 2.1e-101 373.6 485 46.6
Phvul.003G026500 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 3.6e-101 372.9 494 46.4
Duzib177G0040 Durio zibethinus HOM05D004572 ORTHO05D005425 8.0e-101 371.7 483 47.4
CsaV3_3G030260 Cucumis sativus L. HOM05D004572 ORTHO05D005425 1.4e-100 370.9 493 47.5
Lj2g0021533 Lotus japonicus HOM05D004572 ORTHO05D005425 3.0e-100 369.8 469 46.7
CAN.G195.29 Capsicum annuum HOM05D004572 ORTHO05D005425 6.8e-100 368.6 362 56.4
DCAR_017646 Daucus carota HOM05D004572 ORTHO05D005425 8.9e-100 368.2 456 48.7
Hma1.2p1_0127F.1_g059630 Hydrangea macrophylla HOM05D004572 ORTHO05D005425 4.4e-99 365.9 505 45.7
PGR042G2393 Punica granatum HOM05D004572 ORTHO05D005425 4.4e-99 365.9 445 50.8
Gorai.009G267300 Gossypium raimondii HOM05D004572 ORTHO05D005425 1.7e-98 364.0 476 47.7
Gohir.A05G253900 Gossypium hirsutum HOM05D004572 ORTHO05D005425 2.9e-98 363.2 476 47.9
Gohir.D05G255680 Gossypium hirsutum HOM05D004572 ORTHO05D005425 3.7e-98 362.8 476 47.5
Sc07g0008270 Simmondsia chinensis HOM05D004572 ORTHO05D005425 8.3e-98 361.7 531 44.8
TAR629G0838 Trochodendron aralioides HOM05D004572 ORTHO05D005425 3.2e-97 359.8 486 46.7
Carub.0001s3171 Capsella rubella HOM05D004572 ORTHO05D005425 4.1e-97 359.4 477 47.2
CARHR032960 Cardamine hirsuta HOM05D004572 ORTHO05D005425 5.4e-97 359.0 471 48.0
Manes.03G127200 Manihot esculenta HOM05D004572 ORTHO05D005425 5.4e-97 359.0 482 48.3
ClCG07G002440 Citrullus lanatus HOM05D004572 ORTHO05D005425 7.0e-97 358.6 494 46.4
Phvul.003G004000 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 9.2e-97 358.2 495 45.9
Manes.03G127100 Manihot esculenta HOM05D004572 ORTHO05D005425 1.2e-96 357.8 481 47.2
Thhalv10007601m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 2.7e-96 356.7 473 46.5
Nn5g27612 Nelumbo nucifera HOM05D004572 ORTHO05D005425 3.5e-96 356.3 525 44.2
AL1G47900 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 4.6e-96 355.9 487 46.2
MELO3C022741.2 Cucumis melo HOM05D004572 ORTHO05D005425 4.6e-96 355.9 493 44.8
COL.COLO4_28616 Corchorus olitorius HOM05D004572 ORTHO05D005425 7.8e-96 355.1 482 45.4
Duzib268G1853 Durio zibethinus HOM05D004572 ORTHO05D005425 7.8e-96 355.1 474 47.0
Glyma.07G197900 Glycine max HOM05D004572 ORTHO05D005425 7.8e-96 355.1 488 46.5
AUR62019030 Chenopodium quinoa HOM05D004572 ORTHO05D005425 3.0e-95 353.2 489 44.8
Oeu048006.1 Olea europaea HOM05D004572 ORTHO05D005425 3.9e-95 352.8 394 53.3
Potri.001G129700 Populus trichocarpa HOM05D004572 ORTHO05D005425 3.9e-95 352.8 480 45.0
Aa31LG6G7980 Aethionema arabicum HOM05D004572 ORTHO05D005425 5.0e-95 352.4 480 46.5
Lj8P410T5 Lonicera japonica HOM05D004572 ORTHO05D005425 5.0e-95 352.4 338 58.3
AT1G33520 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 1.1e-94 351.3 488 45.9
Sp1g28990 Schrenkiella parvula HOM05D004572 ORTHO05D005425 3.3e-94 349.7 475 45.7
Sed0022149 Sechium edule HOM05D004572 ORTHO05D005425 3.3e-94 349.7 510 44.5
CANSAT56G1258 Cannabis sativa HOM05D004572 ORTHO05D005425 7.3e-94 348.6 509 45.0
AUR62008525 Chenopodium quinoa HOM05D004572 ORTHO05D005425 9.5e-94 348.2 485 45.2
arahy.Tifrunner.gnm1.ann1.GWI8GZ Arachis hypogaea HOM05D004572 ORTHO05D005425 2.1e-93 347.1 483 44.3
CANSAT56G0747 Cannabis sativa HOM05D004572 ORTHO05D005425 2.8e-93 346.7 510 45.3
Prupe.4G208800 Prunus persica HOM05D004572 ORTHO05D005425 6.2e-93 345.5 475 46.7
Sabra03G0071200 Salix brachista HOM05D004572 ORTHO05D005425 1.1e-92 344.7 443 46.5
Psat6g099680 Pisum sativum HOM05D004572 ORTHO05D005425 1.8e-92 344.0 476 43.9
Potri.003G104200 Populus trichocarpa HOM05D004572 ORTHO05D005425 2.3e-92 343.6 450 45.8
QL93p0146_0040 Quercus lobata HOM05D004572 ORTHO05D005425 2.3e-92 343.6 466 44.4
BcaC05g27801 Brassica carinata HOM05D004572 ORTHO05D005425 3.1e-92 343.2 444 48.0
C05p37990 Brassica napus HOM05D004572 ORTHO05D005425 3.1e-92 343.2 444 48.0
BolC5t32530H Brassica oleracea HOM05D004572 ORTHO05D005425 3.1e-92 343.2 473 45.7
MD11G1222200 Malus domestica HOM05D004572 ORTHO05D005425 1.5e-91 340.9 471 45.0
CSS0029181 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 2.0e-91 340.5 529 42.7
CSS0036523 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 2.0e-91 340.5 529 42.7
arahy.Tifrunner.gnm1.ann1.Z20ZUZ Arachis hypogaea HOM05D004572 ORTHO05D005425 2.6e-91 340.1 497 43.9
BcaB03g13695 Brassica carinata HOM05D004572 ORTHO05D005425 2.6e-91 340.1 443 47.2
Eucgr.E01208 Eucalyptus grandis HOM05D004572 ORTHO05D005425 2.6e-91 340.1 490 45.1
Ca_12422_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 7.5e-91 338.6 406 47.5
Ca_12425_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 7.5e-91 338.6 406 47.5
QL06p018920 Quercus lobata HOM05D004572 ORTHO05D005425 7.5e-91 338.6 467 43.7
Glyma.20G002200 Glycine max HOM05D004572 ORTHO05D005425 1.7e-90 337.4 416 49.3
BraA05t21310Z Brassica rapa HOM05D004572 ORTHO05D005425 2.2e-90 337.0 470 46.6
MBI12_g26901_MAGBIO Magnolia biondii HOM05D004572 ORTHO05D005425 2.2e-90 337.0 470 45.5
Medtr1g038340 Medicago truncatula HOM05D004572 ORTHO05D005425 5.4e-89 332.4 406 48.3
PSO675G6986 Papaver somniferum HOM05D004572 ORTHO05D005425 7.0e-89 332.0 514 40.9
PSO541G6108 Papaver somniferum HOM05D004572 ORTHO05D005425 9.2e-89 331.6 515 42.1
FAN21G2024 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.1e-86 324.7 466 45.3
MD03G1208000 Malus domestica HOM05D004572 ORTHO05D005425 1.1e-86 324.7 464 44.8
QL12p001966 Quercus lobata HOM05D004572 ORTHO05D005425 1.9e-86 323.9 439 43.5
RcHm_v2.0_Chr5g0038051 Rosa chinensis HOM05D004572 ORTHO05D005425 2.5e-86 323.6 465 46.2
Sabra01G0100000 Salix brachista HOM05D004572 ORTHO05D005425 4.3e-86 322.8 367 49.3
arahy.Tifrunner.gnm1.ann1.41JFP3 Arachis hypogaea HOM05D004572 ORTHO05D005425 2.8e-85 320.1 477 43.2
FAN11G3304 Fragaria x ananassa HOM05D004572 ORTHO05D005425 2.8e-85 320.1 466 44.4
FAN16G2201 Fragaria x ananassa HOM05D004572 ORTHO05D005425 3.6e-85 319.7 466 44.2
FvH4_3g22160 Fragaria vesca HOM05D004572 ORTHO05D005425 6.2e-85 318.9 466 43.8
vmacro05137 Vaccinium macrocarpon HOM05D004572 ORTHO05D005425 6.2e-85 318.9 510 40.8
Aqoxy5G04375 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 1.1e-84 318.2 515 41.9
TPR.G29795 Trifolium pratense HOM05D004572 ORTHO05D005425 6.8e-84 315.5 481 42.0
ECA248G3611 Erigeron canadensis HOM05D004572 ORTHO05D005425 3.3e-78 296.6 439 44.6
CiPaw.11G104400 Carya illinoinensis HOM05D004572 ORTHO05D005425 2.4e-76 290.4 458 41.5
HanXRQChr04g0098951 Helianthus annuus HOM05D004572 ORTHO05D005425 5.2e-76 289.3 459 41.8
Lalb_Chr20g0109201 Lupinus albus HOM05D004572 ORTHO05D005425 5.8e-75 285.8 464 41.4
Atru.chr6.2109 Acer truncatum HOM05D004572 ORTHO05D005425 1.1e-73 281.6 454 41.4
ECA233G3653 Erigeron canadensis HOM05D004572 ORTHO05D005425 2.7e-72 276.9 458 41.5
Haze_21257 Corylus avellana HOM05D004572 ORTHO05D005425 1.7e-71 274.2 466 39.9
ATR0579G060 Amborella trichopoda HOM05D004572 ORTHO05D005425 1.1e-68 265.0 561 34.6
Cfa012912 Carpinus fangiana HOM05D004572 ORTHO05D005425 3.1e-68 263.5 450 40.7
AL7G28150 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 4.0e-68 263.1 458 39.7
Carub.0007s1601 Capsella rubella HOM05D004572 ORTHO05D005425 4.4e-67 259.6 427 39.8
CDE02G0510 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 1.0e-63 248.4 335 47.5
VMungo0251G2350 Vigna mungo HOM05D004572 ORTHO05D005425 1.9e-62 244.2 362 42.0
AT4G25020 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 5.6e-62 242.7 462 36.4
Manes.15G074001 Manihot esculenta HOM05D004572 ORTHO05D005425 9.6e-62 241.9 437 39.1
SMO347G0031 Selaginella moellendorffii HOM05D004572 ORTHO05D005425 9.6e-62 241.9 397 38.5
Ciclev10001464m.g Citrus clementina HOM05D004572 ORTHO05D005425 6.9e-60 235.7 332 44.6
Cfa012902 Carpinus fangiana HOM05D004572 ORTHO05D005425 9.9e-59 231.9 439 37.6
SHI08932 Sapria himalayana HOM05D004572 ORTHO05D005425 1.1e-57 228.4 463 36.1
HPP92_014435 Vanilla planifolia HOM05D004572 ORTHO05D005425 1.1e-57 228.4 473 36.8
CARHR232410 Cardamine hirsuta HOM05D004572 ORTHO05D005425 4.6e-56 223.0 353 40.8
Thhalv10027298m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 3.7e-53 213.4 432 38.0
Zm00001eb398470 Zea mays HOM05D004572 ORTHO05D005425 8.1e-53 212.2 452 35.4
Os03g0253500 Oryza sativa ssp. japonica HOM05D004572 ORTHO05D005425 5.8e-51 206.1 471 33.5
Cpa.g.sc21.98 Carica papaya HOM05D004572 ORTHO05D005425 3.3e-46 190.3 411 35.5
MCO10G255 Micromonas commoda HOM05D004572 ORTHO05D005425 4.2e-41 173.3 450 31.6
SEGI_34794 Sequoiadendron giganteum HOM05D004572 ORTHO05D005425 1.2e-40 171.8 732 25.3
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 4.1e-36 156.8 333 35.7
Mapoly0027s0115 Marchantia polymorpha HOM05D004572 ORTHO05D005425 1.2e-32 145.2 668 24.4
PSO017G4650 Papaver somniferum HOM05D004572 ORTHO05D005425 3.6e-32 143.7 387 31.0
Lsat_1_v5_gn_6_80001 Lactuca sativa HOM05D004572 ORTHO05D005425 1.8e-28 131.3 211 42.2
TWI34G1093 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 1.8e-28 131.3 214 37.9
SalBow7G4536 Salvia bowleyana HOM05D000482 ORTHO05D000349 2.4e-28 131.0 135 54.8
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 2.4e-28 131.0 211 38.4
Cfa021184 Carpinus fangiana HOM05D004572 ORTHO05D005425 1.9e-25 121.3 213 40.4
CBR_g50444 Chara braunii HOM05D004572 ORTHO05D005425 8.8e-23 112.5 528 22.3
PSO170G2332 Papaver somniferum HOM05D004572 ORTHO05D005425 2.6e-22 110.9 145 42.8
RcHm_v2.0_Chr5g0037991 Rosa chinensis HOM05D004572 ORTHO05D005425 5.3e-20 103.2 216 33.3
CBR_g54973 Chara braunii HOM05D004572 ORTHO05D005425 9.1e-20 102.4 580 22.6
PRCOL_00000575 Prasinoderma coloniale HOM05D004572 ORTHO05D005425 3.5e-19 100.5 518 23.9
Aqoxy7G00153 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 7.7e-19 99.4 154 37.7
Pp3c1_630 Physcomitrium patens HOM05D004572 ORTHO05D005425 1.7e-18 98.2 211 33.2
Prupe.4G208700 Prunus persica HOM05D004572 ORTHO05D005425 3.8e-18 97.1 207 33.8
FAN16G0157 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.9e-17 94.7 166 38.0
Sabra05G0101600 Salix brachista HOM05D004572 ORTHO05D005425 6.1e-16 89.7 74 55.4
Sed0007980 Sechium edule HOM05D004572 ORTHO05D005425 6.1e-16 89.7 93 44.1
Glyma.09G283500 Glycine max HOM05D004572 ORTHO05D005425 8.0e-16 89.4 202 33.2
CDE04G1584 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 1.1e-14 85.5 155 36.8
HanXRQChr03g0083281 Helianthus annuus HOM05D004572 ORTHO05D005425 1.1e-14 85.5 71 56.3
CDE11G0183 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 1.1e-12 79.0 67 50.7
Cre06.g303500 Chlamydomonas reinhardtii HOM05D004572 ORTHO05D005425 1.1e-12 79.0 455 22.4
AagrBONN_evm.TU.Sc2ySwM_344.5065 Anthoceros agrestis HOM05D004572 ORTHO05D005425 1.8e-12 78.2 150 33.3
TWI74G0109 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 7.7e-11 72.8 65 49.2
FvH4_3g22140 Fragaria vesca HOM05D004572 ORTHO05D005425 1.7e-10 71.6 172 33.7
Cpa.g.sc1.400 Carica papaya HOM05D003624 ORTHO05D004188 3.2e-09 67.4 249 28.5
CBR_g2939 Chara braunii HOM05D007240 ORTHO05D003552 1.6e-08 65.1 243 23.9
Gohir.D10G228000 Gossypium hirsutum HOM05D003624 ORTHO05D004188 4.7e-08 63.5 223 34.1
Gorai.011G260400 Gossypium raimondii HOM05D003624 ORTHO05D004188 4.7e-08 63.5 223 34.1
Gohir.A10G218400 Gossypium hirsutum HOM05D003624 ORTHO05D004188 6.1e-08 63.2 223 34.1
Mapoly0087s0013 Marchantia polymorpha HOM05D003624 ORTHO05D004188 5.2e-07 60.1 110 36.4
Duzib114G1042 Durio zibethinus HOM05D003624 ORTHO05D004188 8.8e-07 59.3 196 31.6
MCO11G291 Micromonas commoda HOM05D003624 ORTHO05D004188 1.2e-06 58.9 101 39.6
CARHR045130 Cardamine hirsuta HOM05D003624 ORTHO05D004188 1.5e-06 58.5 213 29.6
Cc04_g09670 Coffea canephora HOM05D003624 ORTHO05D004188 2.0e-06 58.2 263 26.6
C06p16060 Brassica napus HOM05D003624 ORTHO05D004188 2.6e-06 57.8 90 37.8
MELO3C014877.2 Cucumis melo HOM05D003624 ORTHO05D004188 2.6e-06 57.8 102 36.3
Sed0019448 Sechium edule HOM05D003624 ORTHO05D004188 2.6e-06 57.8 102 37.3
AagrBONN_evm.TU.Sc2ySwM_344.715 Anthoceros agrestis HOM05D004572 ORTHO05D005425 3.4e-06 57.4 77 37.7
CBR_g36354 Chara braunii HOM05D003624 ORTHO05D004188 3.4e-06 57.4 109 35.8
ClCG05G013440 Citrullus lanatus HOM05D003624 ORTHO05D004188 3.4e-06 57.4 102 36.3
BcaC01g01521 Brassica carinata HOM05D003624 ORTHO05D004188 4.4e-06 57.0 87 37.9
A08p00650 Brassica napus HOM05D003624 ORTHO05D004188 4.4e-06 57.0 87 37.9
C03p92710 Brassica napus HOM05D003624 ORTHO05D004188 4.4e-06 57.0 87 37.9
BolSC126t60220H Brassica oleracea HOM05D003624 ORTHO05D004188 4.4e-06 57.0 87 37.9
BraA08t32123Z Brassica rapa HOM05D003624 ORTHO05D004188 4.4e-06 57.0 87 37.9
CsaV3_3G027090 Cucumis sativus L. HOM05D003624 ORTHO05D004188 4.4e-06 57.0 102 36.3
Migut.B01491 Erythranthe guttata HOM05D003624 ORTHO05D004188 4.4e-06 57.0 178 28.7
BcaC08g44198 Brassica carinata HOM05D003624 ORTHO05D004188 5.7e-06 56.6 90 36.7
A05p17470 Brassica napus HOM05D003624 ORTHO05D004188 5.7e-06 56.6 90 36.7
BolC6t36805H Brassica oleracea HOM05D003624 ORTHO05D004188 5.7e-06 56.6 90 36.7
BraA05t20642Z Brassica rapa HOM05D003624 ORTHO05D004188 5.7e-06 56.6 90 36.7
Prupe.6G266400 Prunus persica HOM05D003624 ORTHO05D004188 5.7e-06 56.6 252 27.8
BcaB02g10822 Brassica carinata HOM05D003624 ORTHO05D004188 7.5e-06 56.2 90 37.8


User provided reference genes

Program Settings