Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.A00504 Erythranthe guttata HOM05D005201 ORTHO05D006139 1.0e-69 266.9 171 100.0
SalBow4G2195 Salvia bowleyana HOM05D005201 ORTHO05D006139 1.7e-59 233.0 171 84.2
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 5.2e-53 211.5 163 85.3
MSTRG.25759 Avicennia marina HOM05D005201 ORTHO05D006139 1.2e-52 210.3 171 72.5
MSTRG.11837 Avicennia marina HOM05D005201 ORTHO05D006139 8.3e-51 204.1 171 84.2
SGA_v2.0_scaffold269G46298 Striga asiatica HOM05D005201 ORTHO05D006139 2.4e-50 202.6 171 63.7
Eucgr.D02584 Eucalyptus grandis HOM05D005201 ORTHO05D006139 1.1e-47 193.7 175 70.3
Prupe.5G018400 Prunus persica HOM05D005201 ORTHO05D006139 2.5e-47 192.6 163 72.4
Oeu057144.1 Olea europaea HOM05D005201 ORTHO05D006139 9.6e-47 190.7 169 71.0
Oeu002017.1 Olea europaea HOM05D005201 ORTHO05D006139 2.8e-46 189.1 169 74.0
Rhsim01G0132000 Rhododendron simsii HOM05D005201 ORTHO05D006139 3.6e-46 188.7 171 68.4
Actinidia03317 Actinidia chinensis HOM05D005201 ORTHO05D006139 8.1e-46 187.6 171 67.8
FvH4_5g24200 Fragaria vesca HOM05D005201 ORTHO05D006139 1.8e-45 186.4 168 66.7
FAN13G2355 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.8e-45 186.4 168 66.7
FAN18G1178 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.8e-45 186.4 168 66.7
Actinidia25720 Actinidia chinensis HOM05D005201 ORTHO05D006139 3.1e-45 185.7 164 67.7
FAN04G1315 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.5e-44 183.3 170 65.3
Ca_25081_v3 Cicer arietinum L. HOM05D005201 ORTHO05D006139 2.0e-44 183.0 167 68.9
FAN08G2124 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.6e-44 182.6 170 66.5
CSS0000299 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 3.4e-44 182.2 158 68.4
Thecc.03G324300 Theobroma cacao HOM05D005201 ORTHO05D006139 4.4e-44 181.8 155 83.2
MELO3C016255.2 Cucumis melo HOM05D005201 ORTHO05D006139 7.6e-44 181.0 167 56.9
Hma1.2p1_0268F.1_g107720 Hydrangea macrophylla HOM05D005201 ORTHO05D006139 7.6e-44 181.0 167 77.8
DCAR_000700 Daucus carota HOM05D005201 ORTHO05D006139 1.3e-43 180.3 168 70.8
CSS0007100 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 1.7e-43 179.9 158 67.7
Gohir.A08G146800 Gossypium hirsutum HOM05D005201 ORTHO05D006139 2.9e-43 179.1 167 79.6
RcHm_v2.0_Chr7g0214011 Rosa chinensis HOM05D005201 ORTHO05D006139 3.8e-43 178.7 170 75.9
Gohir.D08G167900 Gossypium hirsutum HOM05D005201 ORTHO05D006139 4.9e-43 178.3 167 79.6
Gorai.004G175100 Gossypium raimondii HOM05D005201 ORTHO05D006139 4.9e-43 178.3 167 79.6
Medtr5g026550 Medicago truncatula HOM05D005201 ORTHO05D006139 4.9e-43 178.3 167 67.1
HanXRQChr07g0205241 Helianthus annuus HOM05D005201 ORTHO05D006139 1.1e-42 177.2 161 70.8
HanXRQChr08g0226681 Helianthus annuus HOM05D005201 ORTHO05D006139 2.4e-42 176.0 163 80.4
TAR375G0792 Trochodendron aralioides HOM05D005201 ORTHO05D006139 2.4e-42 176.0 175 64.0
CiPaw.12G072500 Carya illinoinensis HOM05D005201 ORTHO05D006139 4.2e-42 175.3 170 65.9
Sc07g0008280 Simmondsia chinensis HOM05D005201 ORTHO05D006139 5.4e-42 174.9 159 81.8
MD00G1078600 Malus domestica HOM05D005201 ORTHO05D006139 7.1e-42 174.5 167 67.7
Cc00_g08490 Coffea canephora HOM05D005201 ORTHO05D006139 1.2e-41 173.7 171 70.2
Lsat_1_v5_gn_5_60900 Lactuca sativa HOM05D005201 ORTHO05D006139 1.6e-41 173.3 148 79.7
Potri.003G104400 Populus trichocarpa HOM05D005201 ORTHO05D006139 2.1e-41 172.9 160 79.4
unitig_0.g2827 Utricularia gibba HOM05D005201 ORTHO05D006139 2.7e-41 172.6 171 77.2
CiPaw.11G104600 Carya illinoinensis HOM05D005201 ORTHO05D006139 7.8e-41 171.0 170 75.9
CAN.G947.20 Capsicum annuum HOM05D005201 ORTHO05D006139 1.0e-40 170.6 168 63.7
Psat2g143240 Pisum sativum HOM05D005201 ORTHO05D006139 1.0e-40 170.6 167 75.4
Dinv09437 Davidia involucrata HOM05D005201 ORTHO05D006139 1.3e-40 170.2 171 77.2
PGR031G3990 Punica granatum HOM05D005201 ORTHO05D006139 3.0e-40 169.1 172 72.7
PGR067G0002 Punica granatum HOM05D005201 ORTHO05D006139 3.0e-40 169.1 172 72.7
CDE12G0445 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 3.9e-40 168.7 167 64.7
CANSAT21G0726 Cannabis sativa HOM05D005201 ORTHO05D006139 6.6e-40 167.9 166 61.4
CsaV3_4G006880 Cucumis sativus L. HOM05D005201 ORTHO05D006139 6.6e-40 167.9 164 78.7
ClCG07G011320 Citrullus lanatus HOM05D005201 ORTHO05D006139 8.7e-40 167.5 164 78.0
ECA240G4218 Erigeron canadensis HOM05D005201 ORTHO05D006139 1.1e-39 167.2 162 77.2
Sabra03G0071400 Salix brachista HOM05D005201 ORTHO05D006139 1.1e-39 167.2 160 78.8
QL12p002095 Quercus lobata HOM05D005201 ORTHO05D006139 1.5e-39 166.8 166 77.1
Hund14321 Selenicereus undatus HOM05D005201 ORTHO05D006139 1.5e-39 166.8 173 74.6
COL.COLO4_16707 Corchorus olitorius HOM05D005201 ORTHO05D006139 2.5e-39 166.0 164 61.0
MD06G1017600 Malus domestica HOM05D005201 ORTHO05D006139 2.5e-39 166.0 167 62.9
Aqoxy3G02454 Aquilegia oxysepala HOM05D005201 ORTHO05D006139 4.3e-39 165.2 171 59.1
AUR62007435 Chenopodium quinoa HOM05D005201 ORTHO05D006139 7.3e-39 164.5 172 73.3
DCAR_030956 Daucus carota HOM05D005201 ORTHO05D006139 9.6e-39 164.1 158 77.2
CAN.G1741.1 Capsicum annuum HOM05D005201 ORTHO05D006139 1.3e-38 163.7 169 60.9
Lalb_Chr16g0380611 Lupinus albus HOM05D005201 ORTHO05D006139 1.3e-38 163.7 170 63.5
TPR.G39676 Trifolium pratense HOM05D005201 ORTHO05D006139 1.3e-38 163.7 159 75.5
PSO339G2945 Papaver somniferum HOM05D005201 ORTHO05D006139 1.6e-38 163.3 156 76.3
AUR62027303 Chenopodium quinoa HOM05D005201 ORTHO05D006139 2.1e-38 162.9 172 73.3
PSO384G4870 Papaver somniferum HOM05D005201 ORTHO05D006139 2.1e-38 162.9 160 76.2
Duzib205G0777 Durio zibethinus HOM05D005201 ORTHO05D006139 3.6e-38 162.2 163 63.2
ATR0829G041 Amborella trichopoda HOM05D005201 ORTHO05D006139 6.2e-38 161.4 170 64.1
Nitab4.5_0008438g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 8.1e-38 161.0 169 60.4
Ah.02g117370 Amaranthus hybridus HOM05D005201 ORTHO05D006139 1.1e-37 160.6 159 76.7
Cpa.g.sc137.21 Carica papaya HOM05D005201 ORTHO05D006139 1.8e-37 159.8 155 75.5
Lj2g0015792 Lotus japonicus HOM05D005201 ORTHO05D006139 1.8e-37 159.8 168 72.6
Os02g0102600 Oryza sativa ssp. japonica HOM05D005201 ORTHO05D006139 3.1e-37 159.1 157 65.0
Sed0016355 Sechium edule HOM05D005201 ORTHO05D006139 3.1e-37 159.1 165 61.8
TWI60G0094 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 3.1e-37 159.1 162 61.1
Atru.chr6.2111 Acer truncatum HOM05D005201 ORTHO05D006139 6.9e-37 157.9 155 62.6
arahy.Tifrunner.gnm1.ann1.02E8LK Arachis hypogaea HOM05D005201 ORTHO05D006139 6.9e-37 157.9 172 70.9
arahy.Tifrunner.gnm1.ann1.2T22I7 Arachis hypogaea HOM05D005201 ORTHO05D006139 6.9e-37 157.9 172 70.9
AUR62022383 Chenopodium quinoa HOM05D005201 ORTHO05D006139 6.9e-37 157.9 152 78.9
Peaxi162Scf00045g01329 Petunia axillaris HOM05D005201 ORTHO05D006139 6.9e-37 157.9 162 60.5
EL10Ac5g11893 Beta vulgaris HOM05D005201 ORTHO05D006139 1.5e-36 156.8 147 80.3
Nitab4.5_0001327g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.5e-36 156.8 160 62.5
Potri.001G129800 Populus trichocarpa HOM05D005201 ORTHO05D006139 2.6e-36 156.0 160 61.9
TWI32G1103 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 2.6e-36 156.0 162 72.2
VMungo1215G2692 Vigna mungo HOM05D005201 ORTHO05D006139 3.4e-36 155.6 160 75.6
Phvul.002G126500 Phaseolus vulgaris HOM05D005201 ORTHO05D006139 4.4e-36 155.2 156 75.0
Sed0020489 Sechium edule HOM05D005201 ORTHO05D006139 5.8e-36 154.8 165 76.4
FAN10G0178 Fragaria x ananassa HOM05D002235 ORTHO05D006139 7.6e-36 154.5 164 51.8
Glyma.01G150400 Glycine max HOM05D005201 ORTHO05D006139 7.6e-36 154.5 152 65.8
Sopen12g032120 Solanum pennellii HOM05D005201 ORTHO05D006139 9.9e-36 154.1 166 60.8
Solyc08g005910.3 Solanum lycopersicum HOM05D005201 ORTHO05D006139 1.3e-35 153.7 169 58.6
Sopen08g001880 Solanum pennellii HOM05D005201 ORTHO05D006139 1.3e-35 153.7 169 58.6
Ciclev10002646m.g Citrus clementina HOM05D005201 ORTHO05D006139 1.7e-35 153.3 164 72.0
Nitab4.5_0009069g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.7e-35 153.3 169 58.6
FAN14G2110 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.2e-35 152.9 165 51.5
Glyma.09G215400 Glycine max HOM05D005201 ORTHO05D006139 2.9e-35 152.5 156 73.1
PGSC0003DMG400029376 Solanum tuberosum HOM05D005201 ORTHO05D006139 2.9e-35 152.5 143 71.3
FvH4_6g43270 Fragaria vesca HOM05D005201 ORTHO05D006139 4.9e-35 151.8 165 50.9
PGSC0003DMG400004473 Solanum tuberosum HOM05D005201 ORTHO05D006139 6.4e-35 151.4 169 58.0
Lalb_Chr09g0325181 Lupinus albus HOM05D005201 ORTHO05D006139 1.4e-34 150.2 151 74.2
FAN05G2652 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.9e-34 149.8 163 51.5
Lsat_1_v5_gn_6_15560 Lactuca sativa HOM05D005201 ORTHO05D006139 2.4e-34 149.4 159 61.0
RcHm_v2.0_Chr2g0159541 Rosa chinensis HOM05D005201 ORTHO05D006139 3.5e-33 145.6 153 51.6
Sabra01G0100200 Salix brachista HOM05D005201 ORTHO05D006139 7.8e-33 144.4 228 39.0
Manes.04G035300 Manihot esculenta HOM05D005201 ORTHO05D006139 1.3e-32 143.7 152 73.0
GSVIVG01036941001 Vitis vinifera HOM05D005201 ORTHO05D006139 5.1e-32 141.7 172 56.4
PSO063G1500 Papaver somniferum HOM05D005201 ORTHO05D006139 6.6e-32 141.4 150 74.7
PSO782G0015 Papaver somniferum HOM05D005201 ORTHO05D006139 6.6e-32 141.4 150 74.7
Thhalv10014823m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 8.7e-32 141.0 168 70.2
Sp2g24460 Schrenkiella parvula HOM05D005201 ORTHO05D006139 8.7e-32 141.0 151 73.5
vmacro21163 Vaccinium macrocarpon HOM05D005201 ORTHO05D006139 7.3e-31 137.9 130 72.3
Aa31LG11G2130 Aethionema arabicum HOM05D005201 ORTHO05D006139 9.6e-31 137.5 149 72.5
BcaC04g23459 Brassica carinata HOM05D005201 ORTHO05D006139 9.6e-31 137.5 162 54.9
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 9.6e-31 137.5 162 54.9
CARHR274980 Cardamine hirsuta HOM05D005201 ORTHO05D006139 9.6e-31 137.5 162 68.5
Ah.12g056090 Amaranthus hybridus HOM05D005201 ORTHO05D006139 1.6e-30 136.7 169 50.9
Nitab4.5_0001159g0040 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.6e-30 136.7 160 70.6
CDE01G0225 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 2.1e-30 136.3 153 46.4
THA.LOC104801352 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 2.8e-30 136.0 168 52.4
Thhalv10005013m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 3.6e-30 135.6 163 58.3
A09p07260 Brassica napus HOM05D005201 ORTHO05D006139 4.8e-30 135.2 152 56.6
C09p08120 Brassica napus HOM05D005201 ORTHO05D006139 4.8e-30 135.2 152 56.6
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 4.8e-30 135.2 152 56.6
Lj8A408T7 Lonicera japonica HOM05D005201 ORTHO05D006139 4.8e-30 135.2 124 73.4
BraA03t13806Z Brassica rapa HOM05D005201 ORTHO05D006139 6.2e-30 134.8 164 68.3
BcaC06g33218 Brassica carinata HOM05D005201 ORTHO05D006139 2.4e-29 132.9 164 67.7
BolC7t45014H Brassica oleracea HOM05D005201 ORTHO05D006139 2.4e-29 132.9 164 67.7
A03p46860 Brassica napus HOM05D005201 ORTHO05D006139 3.1e-29 132.5 164 67.1
AT5G07840 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 6.9e-29 131.3 157 67.5
THA.LOC104818333 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 1.2e-28 130.6 169 54.4
SEGI_37761 Sequoiadendron giganteum HOM05D005201 ORTHO05D006139 2.6e-28 129.4 165 67.9
AL6G18180 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 3.4e-28 129.0 169 68.0
AL8G37890 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 3.4e-28 129.0 162 53.1
C07p44910 Brassica napus HOM05D005201 ORTHO05D006139 9.9e-28 127.5 165 66.1
Carub.0008s2190 Capsella rubella HOM05D005201 ORTHO05D006139 1.3e-27 127.1 162 52.5
AT5G61230 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 1.7e-27 126.7 148 55.4
Mapoly0093s0041 Marchantia polymorpha HOM05D005201 ORTHO05D006139 3.2e-26 122.5 132 75.0
SMO356G0124 Selaginella moellendorffii HOM05D005201 ORTHO05D006139 1.6e-25 120.2 128 61.7
Dinv37463 Davidia involucrata HOM05D005201 ORTHO05D006139 3.5e-25 119.0 98 79.6
SGA_v2.0_scaffold2264G54095 Striga asiatica HOM05D005201 ORTHO05D006139 1.3e-24 117.1 111 72.1
Haze_08003 Corylus avellana HOM05D005201 ORTHO05D006139 7.4e-23 111.3 129 60.5
Pp3c6_1190 Physcomitrium patens HOM05D005201 ORTHO05D006139 1.3e-22 110.5 128 56.2
Zm00001eb229310 Zea mays HOM05D005201 ORTHO05D006139 3.7e-22 109.0 120 65.0
CANSAT11G0816 Cannabis sativa HOM05D005201 ORTHO05D006139 1.4e-21 107.1 153 56.2
Eucgr.B00905 Eucalyptus grandis HOM05D005201 ORTHO05D006139 1.5e-20 103.6 86 57.0
AagrBONN_evm.TU.Sc2ySwM_344.4086 Anthoceros agrestis HOM05D005201 ORTHO05D006139 3.4e-20 102.4 108 45.4
Solyc12g096260.2 Solanum lycopersicum HOM05D005201 ORTHO05D006139 3.8e-19 99.0 102 72.5
Nn3g19216 Nelumbo nucifera HOM05D005201 ORTHO05D006139 9.3e-18 94.4 101 68.3
FAN02G0543 Fragaria x ananassa HOM05D002235 ORTHO05D006252 1.9e-15 86.7 83 50.6
Lsat_1_v5_gn_8_13820 Lactuca sativa HOM05D005201 ORTHO05D006139 4.5e-12 75.5 46 65.2
Peaxi162Scf00876g00121 Petunia axillaris HOM05D005201 ORTHO05D006139 5.8e-12 75.1 43 76.7


User provided reference genes

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