Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.A00332 Erythranthe guttata HOM05D005213 ORTHO05D006229 1.4e-221 772.7 408 100.0
Cc08_g07800 Coffea canephora HOM05D005213 ORTHO05D006229 2.3e-107 393.3 431 57.5
TWI34G0479 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 1.2e-98 364.4 434 53.5
Ciclev10008490m.g Citrus clementina HOM05D005213 ORTHO05D006229 4.8e-97 359.0 434 56.2
TAR624G0676 Trochodendron aralioides HOM05D005213 ORTHO05D006229 5.3e-96 355.5 426 54.0
Prupe.1G401300 Prunus persica HOM05D005213 ORTHO05D006229 2.0e-95 353.6 440 54.3
Gorai.009G039700 Gossypium raimondii HOM05D005213 ORTHO05D006229 1.7e-94 350.5 441 53.3
Cpa.g.sc82.19 Carica papaya HOM05D005213 ORTHO05D006229 2.2e-94 350.1 423 54.8
Potri.006G217900 Populus trichocarpa HOM05D005213 ORTHO05D006229 6.5e-94 348.6 449 53.5
Gohir.D05G039200 Gossypium hirsutum HOM05D005213 ORTHO05D006229 1.1e-93 347.8 443 53.3
SGA_v2.0_scaffold22G09922 Striga asiatica HOM05D005213 ORTHO05D006229 1.1e-93 347.8 412 54.6
Duzib187G1454 Durio zibethinus HOM05D005213 ORTHO05D006229 2.1e-92 343.6 433 51.3
Peaxi162Scf00922g00016 Petunia axillaris HOM05D005213 ORTHO05D006229 5.7e-90 335.5 434 53.0
Thecc.09G066400 Theobroma cacao HOM05D005213 ORTHO05D006229 5.7e-90 335.5 441 52.2
Manes.16G087800 Manihot esculenta HOM05D005213 ORTHO05D006229 4.1e-88 329.3 430 53.5
DCAR_001248 Daucus carota HOM05D005213 ORTHO05D006229 2.9e-86 323.2 427 50.1
COL.COLO4_21169 Corchorus olitorius HOM05D005213 ORTHO05D006229 2.5e-85 320.1 456 49.1
CAN.G1059.3 Capsicum annuum HOM05D005213 ORTHO05D006229 5.5e-85 318.9 419 50.4
MD08G1046900 Malus domestica HOM05D005213 ORTHO05D006229 7.2e-85 318.5 463 49.7
Dinv41845 Davidia involucrata HOM05D005213 ORTHO05D006229 9.5e-85 318.2 479 49.9
MD15G1047100 Malus domestica HOM05D005213 ORTHO05D006229 1.2e-84 317.8 436 50.5
CiPaw.16G068600 Carya illinoinensis HOM05D005213 ORTHO05D006229 1.6e-84 317.4 447 51.0
RcHm_v2.0_Chr6g0304741 Rosa chinensis HOM05D005213 ORTHO05D006229 6.1e-84 315.5 441 50.3
Cfa023359 Carpinus fangiana HOM05D005213 ORTHO05D006229 1.8e-83 313.9 441 50.8
FAN15G1397 Fragaria x ananassa HOM05D005213 ORTHO05D006229 4.4e-82 309.3 446 50.0
FvH4_2g37040 Fragaria vesca HOM05D005213 ORTHO05D006229 5.7e-82 308.9 444 50.5
Duzib168G1397 Durio zibethinus HOM05D005213 ORTHO05D006229 7.5e-82 308.5 422 48.6
FAN20G0215 Fragaria x ananassa HOM05D005213 ORTHO05D006229 1.3e-81 307.8 444 50.5
FAN27G3126 Fragaria x ananassa HOM05D005213 ORTHO05D006229 1.7e-81 307.4 444 50.2
Duzib150G1003 Durio zibethinus HOM05D005213 ORTHO05D006229 3.7e-81 306.2 389 51.9
Haze_13552 Corylus avellana HOM05D005213 ORTHO05D006229 5.4e-80 302.4 442 49.8
Nitab4.5_0000508g0090 Nicotiana tabacum HOM05D005213 ORTHO05D006229 5.9e-79 298.9 410 50.2
MSTRG.11768 Avicennia marina HOM05D005213 ORTHO05D006229 8.6e-78 295.0 305 56.7
Glyma.04G057900 Glycine max HOM05D005213 ORTHO05D006229 2.5e-77 293.5 425 47.1
Manes.03G055700 Manihot esculenta HOM05D005213 ORTHO05D006229 3.3e-77 293.1 401 49.6
TWI32G0481 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 1.2e-76 291.2 429 50.8
MBI19_g18107_MAGBIO Magnolia biondii HOM05D004195 ORTHO05D005309 1.6e-76 290.8 432 48.8
Ca_15799_v3 Cicer arietinum L. HOM05D005213 ORTHO05D006229 2.1e-76 290.4 423 46.8
Nitab4.5_0007212g0010 Nicotiana tabacum HOM05D005213 ORTHO05D006229 8.0e-76 288.5 415 49.2
Gorai.010G094100 Gossypium raimondii HOM05D005213 ORTHO05D006229 1.2e-74 284.6 425 46.6
Eucgr.C00749 Eucalyptus grandis HOM05D005213 ORTHO05D006229 1.5e-74 284.3 435 47.8
Glyma.06G058600 Glycine max HOM05D005213 ORTHO05D006229 2.0e-74 283.9 420 46.4
Gohir.D06G080700 Gossypium hirsutum HOM05D005213 ORTHO05D006229 2.6e-74 283.5 425 46.1
Oeu020105.1 Olea europaea HOM05D005213 ORTHO05D006229 5.8e-74 282.3 401 52.4
Gohir.A06G081000 Gossypium hirsutum HOM05D005213 ORTHO05D006229 1.7e-73 280.8 425 46.8
Nn8g38551 Nelumbo nucifera HOM05D005213 ORTHO05D006229 4.1e-72 276.2 440 47.0
Lj1g0011388 Lotus japonicus HOM05D005213 ORTHO05D006229 3.5e-71 273.1 394 47.0
VMungo1309G2063 Vigna mungo HOM05D005213 ORTHO05D006229 1.7e-70 270.8 398 47.0
Medtr3g105580 Medicago truncatula HOM05D005213 ORTHO05D006229 2.3e-70 270.4 395 47.1
Aqoxy7G04081 Aquilegia oxysepala HOM05D005213 ORTHO05D006229 3.9e-70 269.6 416 47.4
GSVIVG01035506001 Vitis vinifera HOM05D005213 ORTHO05D006229 7.3e-69 265.4 405 45.4
Lalb_Chr11g0063421 Lupinus albus HOM05D005213 ORTHO05D006229 2.8e-68 263.5 363 48.2
Nn6g35650 Nelumbo nucifera HOM05D005213 ORTHO05D006229 1.8e-67 260.8 415 45.8
TPR.G21422 Trifolium pratense HOM05D005213 ORTHO05D006229 6.8e-67 258.8 392 45.9
Phvul.009G084600 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 4.4e-66 256.1 417 45.8
CSS0041342 Camellia sinensis var. sinensis HOM05D005213 ORTHO05D006229 5.4e-64 249.2 481 42.8
PSO386G0069 Papaver somniferum HOM05D005213 ORTHO05D006229 4.6e-63 246.1 470 43.2
Lj7P206T8 Lonicera japonica HOM05D005213 ORTHO05D006229 1.7e-62 244.2 324 49.7
Oeu022129.1 Olea europaea HOM05D005213 ORTHO05D006229 6.6e-62 242.3 313 49.8
Hund02523 Selenicereus undatus HOM05D005213 ORTHO05D006229 4.3e-61 239.6 352 46.9
Psat5g033280 Pisum sativum HOM05D005213 ORTHO05D006229 8.1e-60 235.3 397 44.3
CDE05G3316 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 2.2e-57 227.3 408 42.6
Haze_18367 Corylus avellana HOM05D005213 ORTHO05D006229 6.4e-57 225.7 384 45.3
Rhsim04G0156600 Rhododendron simsii HOM05D005213 ORTHO05D006229 8.3e-57 225.3 439 41.5
HanXRQChr08g0228011 Helianthus annuus HOM05D005213 ORTHO05D006229 7.1e-56 222.2 416 41.8
EL10Ac5g11257 Beta vulgaris HOM05D005213 ORTHO05D006229 3.5e-55 219.9 417 40.5
ATR0681G043 Amborella trichopoda HOM05D005213 ORTHO05D006229 1.3e-54 218.0 464 40.7
Cfa017841 Carpinus fangiana HOM05D005213 ORTHO05D006229 1.3e-54 218.0 343 46.1
Lalb_Chr22g0349651 Lupinus albus HOM05D005213 ORTHO05D006229 7.3e-53 212.2 399 42.1
HanXRQChr03g0067421 Helianthus annuus HOM05D005213 ORTHO05D006229 1.2e-52 211.5 391 44.0
TPR.G38861 Trifolium pratense HOM05D005213 ORTHO05D006229 1.2e-52 211.5 405 42.5
PSO223G0037 Papaver somniferum HOM05D005213 ORTHO05D006229 3.6e-52 209.9 471 39.1
ECA240G0440 Erigeron canadensis HOM05D005213 ORTHO05D006229 1.4e-51 208.0 412 41.7
Solyc08g067270.3 Solanum lycopersicum HOM05D005213 ORTHO05D006229 1.9e-48 197.6 228 50.0
PGR142G1942 Punica granatum HOM05D005213 ORTHO05D006229 4.6e-47 193.0 416 40.6
CsaV3_6G031800 Cucumis sativus L. HOM05D005213 ORTHO05D006229 4.3e-45 186.4 353 39.1
THA.LOC104810950 Tarenaya hassleriana HOM05D005213 ORTHO05D006229 9.6e-45 185.3 404 38.9
ECA234G4818 Erigeron canadensis HOM05D005213 ORTHO05D006229 6.2e-44 182.6 398 39.7
vmacro08659 Vaccinium macrocarpon HOM05D005213 ORTHO05D006229 9.0e-43 178.7 340 43.2
AUR62032196 Chenopodium quinoa HOM05D005213 ORTHO05D006229 1.2e-42 178.3 398 37.2
CANSAT25G2504 Cannabis sativa HOM05D005213 ORTHO05D006229 2.6e-42 177.2 393 38.7
ClCG08G009670 Citrullus lanatus HOM05D005213 ORTHO05D006229 4.4e-42 176.4 388 38.1
Medtr1g014750 Medicago truncatula HOM05D005213 ORTHO05D006229 1.3e-41 174.9 368 39.1
Oeu030214.1 Olea europaea HOM05D005213 ORTHO05D006229 1.7e-41 174.5 412 38.6
CDE05G3450 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 2.4e-40 170.6 419 35.8
Gohir.A05G037666 Gossypium hirsutum HOM05D005213 ORTHO05D006229 9.3e-40 168.7 177 53.7
SalBow8G0306 Salvia bowleyana HOM05D005213 ORTHO05D006229 2.7e-39 167.2 385 41.0
HanXRQChr10g0309951 Helianthus annuus HOM05D005213 ORTHO05D006229 7.9e-39 165.6 407 35.4
Sc10g0009530 Simmondsia chinensis HOM05D005213 ORTHO05D006229 6.2e-36 156.0 387 35.1
Zm00001eb019450 Zea mays HOM05D005213 ORTHO05D006229 1.1e-35 155.2 462 36.1
Hma1.2p1_0920F.1_g236590 Hydrangea macrophylla HOM05D005213 ORTHO05D006229 1.8e-35 154.5 414 37.9
MELO3C026560.2 Cucumis melo HOM05D005213 ORTHO05D006229 3.1e-35 153.7 332 36.1
AUR62036963 Chenopodium quinoa HOM05D005213 ORTHO05D006229 4.5e-34 149.8 396 32.8
Sed0001538 Sechium edule HOM05D005213 ORTHO05D006229 4.9e-33 146.4 340 35.6
Sopen08g021200 Solanum pennellii HOM05D005213 ORTHO05D006229 4.9e-33 146.4 120 59.2
Ca_13089_v3 Cicer arietinum L. HOM05D005213 ORTHO05D006229 1.1e-32 145.2 312 37.8
Psat6g023400 Pisum sativum HOM05D005213 ORTHO05D006229 3.0e-30 137.1 374 35.3
Actinidia26432 Actinidia chinensis HOM05D005213 ORTHO05D006229 5.1e-30 136.3 169 49.1
HPP92_002168 Vanilla planifolia HOM05D006173 ORTHO05D007685 1.9e-29 134.4 277 39.7
Lalb_Chr08g0244621 Lupinus albus HOM05D005213 ORTHO05D006229 7.6e-26 122.5 113 54.9
unitig_32.g10930 Utricularia gibba HOM05D005213 ORTHO05D006229 7.6e-26 122.5 325 33.8
SGA_v2.0_scaffold4G02181 Striga asiatica HOM05D005213 ORTHO05D006229 3.2e-24 117.1 419 33.4
BcaC03g13850 Brassica carinata HOM05D005213 ORTHO05D006229 5.5e-24 116.3 339 33.9
BolC2t07127H Brassica oleracea HOM05D005213 ORTHO05D006229 5.5e-24 116.3 339 33.9
Atru.chr7.1814 Acer truncatum HOM05D005213 ORTHO05D006229 7.1e-24 115.9 130 60.8
Actinidia27819 Actinidia chinensis HOM05D005213 ORTHO05D006229 6.0e-23 112.8 144 56.9
AT5G21280 Arabidopsis thaliana HOM05D005213 ORTHO05D006229 3.9e-22 110.2 407 32.7
BNapus_Darmor_BZH_scaffold_38p00940 Brassica napus HOM05D005213 ORTHO05D006229 5.1e-22 109.8 404 31.4
BraA02t05631Z Brassica rapa HOM05D005213 ORTHO05D006229 5.1e-22 109.8 404 31.4
CDE11G0900 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 5.1e-22 109.8 346 34.1
Phvul.001G044200 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 5.1e-22 109.8 287 33.8
BraA03t10361Z Brassica rapa HOM05D005213 ORTHO05D006229 8.7e-22 109.0 342 31.6
VMungo0477G0001 Vigna mungo HOM05D005213 ORTHO05D006229 1.1e-21 108.6 457 28.7
C03p12080 Brassica napus HOM05D005213 ORTHO05D006229 3.3e-21 107.1 343 32.1
BcaC01g06616 Brassica carinata HOM05D005213 ORTHO05D006229 5.7e-21 106.3 343 32.1
BolC3t13679H Brassica oleracea HOM05D005213 ORTHO05D006229 5.7e-21 106.3 343 32.1
BcaB05g22758 Brassica carinata HOM05D005213 ORTHO05D006229 7.4e-21 105.9 336 32.1
BraA10t43954Z Brassica rapa HOM05D005213 ORTHO05D006229 3.7e-20 103.6 351 31.9
A10p18740 Brassica napus HOM05D005213 ORTHO05D006229 1.8e-19 101.3 351 31.6
Migut.E01467 Erythranthe guttata HOM05D005213 ORTHO05D006229 2.4e-19 100.9 428 30.4
Carub.0006s1962 Capsella rubella HOM05D005213 ORTHO05D006229 5.3e-19 99.8 399 30.8
A03p10500 Brassica napus HOM05D005213 ORTHO05D006229 3.4e-18 97.1 343 31.5
C09p54690 Brassica napus HOM05D005213 ORTHO05D006229 5.8e-18 96.3 353 31.2
BolC9t58333H Brassica oleracea HOM05D005213 ORTHO05D006229 5.8e-18 96.3 353 31.2
CARHR191550 Cardamine hirsuta HOM05D005213 ORTHO05D006229 5.8e-18 96.3 388 32.2
Thhalv10014216m.g Eutrema salsugineum HOM05D005213 ORTHO05D006229 1.3e-17 95.1 389 29.8
AL6G32940 Arabidopsis lyrata HOM05D005213 ORTHO05D006229 2.2e-17 94.4 388 30.2
BcaB08g36461 Brassica carinata HOM05D005213 ORTHO05D006229 2.2e-17 94.4 398 30.9
Phvul.001G044400 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 2.2e-17 94.4 368 28.5
BcaC04g19528 Brassica carinata HOM05D005213 ORTHO05D006229 2.9e-17 94.0 352 31.0
CsaV3_4G036220 Cucumis sativus L. HOM05D005213 ORTHO05D006229 2.9e-17 94.0 343 32.9
HPP92_013274 Vanilla planifolia HOM05D005213 ORTHO05D006229 1.9e-16 91.3 311 32.2
Aa31LG1G13440 Aethionema arabicum HOM05D005213 ORTHO05D006229 4.2e-16 90.1 332 32.2
MELO3C016931.2 Cucumis melo HOM05D005213 ORTHO05D006229 1.2e-15 88.6 344 30.8
Sp6g23210 Schrenkiella parvula HOM05D005213 ORTHO05D006229 1.2e-15 88.6 101 57.4
unitig_747.g21889 Utricularia gibba HOM05D005213 ORTHO05D006229 2.1e-15 87.8 377 29.4
arahy.Tifrunner.gnm1.ann1.3D63PE Arachis hypogaea HOM05D005213 ORTHO05D006229 3.5e-15 87.0 325 31.1
arahy.Tifrunner.gnm1.ann1.698XEU Arachis hypogaea HOM05D005213 ORTHO05D006229 1.8e-14 84.7 339 28.3
SEGI_40729 Sequoiadendron giganteum HOM05D005213 ORTHO05D006229 3.9e-14 83.6 398 29.4
ECA236G4272 Erigeron canadensis HOM05D005213 ORTHO05D006229 5.1e-14 83.2 312 29.8
BcaB01g04752 Brassica carinata HOM05D005213 ORTHO05D006229 1.6e-12 78.2 47 87.2
BraA03t10362Z Brassica rapa HOM05D005213 ORTHO05D006229 1.6e-12 78.2 47 87.2
ClCG05G015950 Citrullus lanatus HOM05D005213 ORTHO05D006229 4.8e-12 76.6 330 30.0
Zm00001eb109280 Zea mays HOM05D005213 ORTHO05D006229 4.8e-12 76.6 317 31.5
Phvul.001G044300 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 6.3e-12 76.3 187 36.4
unitig_0.g2816 Utricularia gibba HOM05D005213 ORTHO05D006229 4.5e-10 70.1 373 26.5
HanXRQChr09g0261901 Helianthus annuus HOM05D005213 ORTHO05D006229 7.7e-10 69.3 227 34.8


User provided reference genes

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