Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.A00288 Erythranthe guttata HOM05D007454 ORTHO05D009382 9.3e-151 537.0 294 100.0
CSS0001844 Camellia sinensis var. sinensis HOM05D007454 ORTHO05D009382 3.4e-28 129.8 150 46.7
Actinidia13275 Actinidia chinensis HOM05D007454 ORTHO05D009382 1.0e-27 128.3 141 50.4
Cc11_g01380 Coffea canephora HOM05D007454 ORTHO05D009382 8.5e-27 125.2 153 46.4
QL12p031592 Quercus lobata HOM05D007454 ORTHO05D009382 1.4e-26 124.4 145 44.1
TWI34G0809 Tripterygium wilfordii HOM05D007454 ORTHO05D009382 1.9e-26 124.0 147 45.6
Rhsim02G0189300 Rhododendron simsii HOM05D007454 ORTHO05D009382 2.5e-26 123.6 141 46.1
Oeu032495.1 Olea europaea HOM05D007454 ORTHO05D009382 9.4e-26 121.7 141 47.5
Nitab4.5_0003201g0010 Nicotiana tabacum HOM05D007454 ORTHO05D009382 1.2e-25 121.3 141 47.5
Actinidia29311 Actinidia chinensis HOM05D007454 ORTHO05D009382 4.6e-25 119.4 129 51.2
Potri.006G248300 Populus trichocarpa HOM05D007454 ORTHO05D009382 4.6e-25 119.4 145 48.3
unitig_748.g8205 Utricularia gibba HOM05D007454 ORTHO05D009382 4.6e-25 119.4 143 51.0
Atru.chr7.2345 Acer truncatum HOM05D007454 ORTHO05D009382 3.0e-24 116.7 150 41.3
RcHm_v2.0_Chr6g0298931 Rosa chinensis HOM05D007454 ORTHO05D009382 3.9e-24 116.3 145 45.5
Thecc.09G146500 Theobroma cacao HOM05D007454 ORTHO05D009382 3.9e-24 116.3 144 45.8
Haze_21608 Corylus avellana HOM05D007454 ORTHO05D009382 5.1e-24 115.9 142 48.6
Solyc08g067630.3 Solanum lycopersicum HOM05D007454 ORTHO05D009382 6.7e-24 115.5 148 43.9
Cfa013203 Carpinus fangiana HOM05D007454 ORTHO05D009382 8.8e-24 115.2 152 45.4
Nn2g11862 Nelumbo nucifera HOM05D007454 ORTHO05D009382 1.1e-23 114.8 160 42.5
TAR383G0100 Trochodendron aralioides HOM05D007454 ORTHO05D009382 1.1e-23 114.8 145 44.1
Gorai.007G350400 Gossypium raimondii HOM05D007454 ORTHO05D009382 2.0e-23 114.0 148 42.6
CiPaw.08G014500 Carya illinoinensis HOM05D007454 ORTHO05D009382 3.3e-23 113.2 157 42.7
Sabra06G0194300 Salix brachista HOM05D007454 ORTHO05D009382 3.3e-23 113.2 143 45.5
FvH4_2g29860 Fragaria vesca HOM05D007454 ORTHO05D009382 4.4e-23 112.8 145 43.4
Manes.16G117700 Manihot esculenta HOM05D007454 ORTHO05D009382 4.4e-23 112.8 155 44.5
Nitab4.5_0000125g0360 Nicotiana tabacum HOM05D007454 ORTHO05D009382 4.4e-23 112.8 145 43.4
FAN20G1122 Fragaria x ananassa HOM05D007454 ORTHO05D009382 7.4e-23 112.1 148 43.9
PGSC0003DMG400002261 Solanum tuberosum HOM05D007454 ORTHO05D009382 7.4e-23 112.1 147 44.9
Dinv11595 Davidia involucrata HOM05D007454 ORTHO05D009382 9.7e-23 111.7 113 49.6
FAN24G1693 Fragaria x ananassa HOM05D007454 ORTHO05D009382 9.7e-23 111.7 145 44.1
Gohir.D11G320200 Gossypium hirsutum HOM05D007454 ORTHO05D009382 9.7e-23 111.7 147 43.5
Gohir.A11G304800 Gossypium hirsutum HOM05D007454 ORTHO05D009382 2.8e-22 110.2 143 41.3
FAN27G1093 Fragaria x ananassa HOM05D007454 ORTHO05D009382 3.7e-22 109.8 145 42.8
CAN.G506.13 Capsicum annuum HOM05D007454 ORTHO05D009382 4.8e-22 109.4 149 43.0
COL.COLO4_24027 Corchorus olitorius HOM05D007454 ORTHO05D009382 6.3e-22 109.0 141 43.3
FAN15G1931 Fragaria x ananassa HOM05D007454 ORTHO05D009382 3.1e-21 106.7 145 43.4
TAR626G1515 Trochodendron aralioides HOM05D007454 ORTHO05D009382 4.1e-21 106.3 140 42.1
SalBow4G3079 Salvia bowleyana HOM05D007454 ORTHO05D009382 9.1e-21 105.1 77 63.6
Duzib150G0674 Durio zibethinus HOM05D007454 ORTHO05D009382 1.2e-20 104.8 120 46.7
Manes.03G018900 Manihot esculenta HOM05D007454 ORTHO05D009382 1.2e-20 104.8 150 42.0
MD15G1117600 Malus domestica HOM05D007454 ORTHO05D009382 7.7e-20 102.1 148 43.2
Eucgr.C01807 Eucalyptus grandis HOM05D007454 ORTHO05D009382 2.2e-19 100.5 151 41.1
Lsat_1_v5_gn_1_45380 Lactuca sativa HOM05D007454 ORTHO05D009382 3.8e-19 99.8 149 40.9
Prupe.1G471000 Prunus persica HOM05D007454 ORTHO05D009382 3.8e-19 99.8 147 41.5
CiPaw.07G219000 Carya illinoinensis HOM05D007454 ORTHO05D009382 6.5e-19 99.0 154 40.9
Oeu027789.1 Olea europaea HOM05D010238 ORTHO05D010031 1.1e-18 98.2 90 53.3
DCAR_001472 Daucus carota HOM05D007454 ORTHO05D009382 1.9e-18 97.4 121 40.5
Ciclev10009811m.g Citrus clementina HOM05D007454 ORTHO05D009382 1.6e-17 94.4 144 37.5
MD08G1140700 Malus domestica HOM05D007454 ORTHO05D009382 1.6e-17 94.4 151 41.7
Sed0012550 Sechium edule HOM05D007454 ORTHO05D009382 2.1e-17 94.0 147 42.2
HanXRQChr01g0030031 Helianthus annuus HOM05D007454 ORTHO05D009382 3.6e-17 93.2 145 40.0
ECA248G0251 Erigeron canadensis HOM05D007454 ORTHO05D009382 4.7e-17 92.8 153 40.5
Glyma.06G072000 Glycine max HOM05D007454 ORTHO05D009382 7.9e-17 92.0 150 38.7
Sed0003243 Sechium edule HOM05D007454 ORTHO05D009382 1.0e-16 91.7 159 37.7
Hund25693 Selenicereus undatus HOM05D007454 ORTHO05D009382 1.0e-16 91.7 159 36.5
ClCG05G017140 Citrullus lanatus HOM05D007454 ORTHO05D009382 1.8e-16 90.9 151 38.4
EL10Ac2g02557 Beta vulgaris HOM05D007454 ORTHO05D009382 2.3e-16 90.5 158 41.1
Lalb_Chr23g0268861 Lupinus albus HOM05D007454 ORTHO05D009382 2.0e-15 87.4 153 38.6
Thhalv10000347m.g Eutrema salsugineum HOM05D007454 ORTHO05D009382 2.6e-15 87.0 160 41.9
AT2G25625 Arabidopsis thaliana HOM05D007454 ORTHO05D009382 3.3e-15 86.7 155 41.9
MELO3C003676.2 Cucumis melo HOM05D007454 ORTHO05D009382 3.3e-15 86.7 148 38.5
CsaV3_3G046620 Cucumis sativus L. HOM05D007454 ORTHO05D009382 3.3e-15 86.7 155 40.6
Cpa.g.sc603.1 Carica papaya HOM05D007454 ORTHO05D009382 1.3e-14 84.7 123 39.0
Lj1g0018180 Lotus japonicus HOM05D007454 ORTHO05D009382 2.2e-14 84.0 160 38.1
BcaC02g08336 Brassica carinata HOM05D007454 ORTHO05D009382 4.8e-14 82.8 153 39.2
C04p55570 Brassica napus HOM05D007454 ORTHO05D009382 4.8e-14 82.8 153 39.2
BolC4t27081H Brassica oleracea HOM05D007454 ORTHO05D009382 4.8e-14 82.8 153 39.2
Glyma.04G070000 Glycine max HOM05D007454 ORTHO05D009382 4.8e-14 82.8 148 36.5
AL4G17110 Arabidopsis lyrata HOM05D007454 ORTHO05D009382 6.3e-14 82.4 155 41.9
arahy.Tifrunner.gnm1.ann1.AC8RV3 Arachis hypogaea HOM05D007454 ORTHO05D009382 1.1e-13 81.6 155 38.7
BraA04t17571Z Brassica rapa HOM05D007454 ORTHO05D009382 1.1e-13 81.6 153 38.6
Zm00001eb296620 Zea mays HOM05D007454 ORTHO05D009382 1.1e-13 81.6 114 39.5
Aqoxy7G01923 Aquilegia oxysepala HOM05D007454 ORTHO05D009382 1.4e-13 81.3 148 35.1
A04p19830 Brassica napus HOM05D007454 ORTHO05D009382 1.8e-13 80.9 153 38.6
Phvul.009G096400 Phaseolus vulgaris HOM05D007454 ORTHO05D009382 1.8e-13 80.9 144 37.5
VMungo1309G0733 Vigna mungo HOM05D007454 ORTHO05D009382 1.8e-13 80.9 131 37.4
Carub.0004s0541 Capsella rubella HOM05D007454 ORTHO05D009382 2.4e-13 80.5 149 43.6
CDE07G1568 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 3.1e-13 80.1 132 37.9
Sp4g05200 Schrenkiella parvula HOM05D007454 ORTHO05D009382 4.1e-13 79.7 157 37.6
THA.LOC104803822 Tarenaya hassleriana HOM05D007454 ORTHO05D009382 4.1e-13 79.7 149 41.6
arahy.Tifrunner.gnm1.ann1.X4UCF1 Arachis hypogaea HOM05D007454 ORTHO05D009382 5.3e-13 79.3 153 37.9
BcaB06g28081 Brassica carinata HOM05D007454 ORTHO05D009382 7.0e-13 79.0 153 37.9
ClCG08G012990 Citrullus lanatus HOM05D007454 ORTHO05D009382 7.0e-13 79.0 148 37.2
Sopen08g021580 Solanum pennellii HOM05D007454 ORTHO05D009382 7.0e-13 79.0 100 45.0
Aa31LG1G8530 Aethionema arabicum HOM05D007454 ORTHO05D009382 9.1e-13 78.6 156 37.2
CARHR115660 Cardamine hirsuta HOM05D007454 ORTHO05D009382 1.2e-12 78.2 153 39.2
CsaV3_2G031720 Cucumis sativus L. HOM05D007454 ORTHO05D009382 2.0e-12 77.4 125 35.2
MELO3C011223.2 Cucumis melo HOM05D007454 ORTHO05D009382 5.9e-12 75.9 112 41.1
FAN06G3436 Fragaria x ananassa HOM05D010238 ORTHO05D010031 1.0e-11 75.1 78 47.4
Cc06_g13000 Coffea canephora HOM05D010238 ORTHO05D010031 5.0e-11 72.8 91 44.0
FAN10G1930 Fragaria x ananassa HOM05D010238 ORTHO05D010031 8.5e-11 72.0 78 46.2
Sc09g0008740 Simmondsia chinensis HOM05D007454 ORTHO05D009382 1.1e-10 71.6 153 31.4
PSO017G6963 Papaver somniferum HOM05D007454 ORTHO05D009382 1.2e-09 68.2 98 39.8
Ca_15708_v3 Cicer arietinum L. HOM05D007454 ORTHO05D009382 3.6e-09 66.6 163 34.4
Medtr3g107890 Medicago truncatula HOM05D007454 ORTHO05D009382 8.0e-09 65.5 159 35.2
PSO170G5517 Papaver somniferum HOM05D007454 ORTHO05D009382 8.0e-09 65.5 96 39.6
Os05g0575000 Oryza sativa ssp. japonica HOM05D007454 ORTHO05D009382 1.0e-08 65.1 74 48.6
Prupe.1G469500 Prunus persica HOM05D010238 ORTHO05D010031 1.8e-08 64.3 95 38.9
CDE06G2386 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 2.3e-08 63.9 122 38.5
CANSAT11G0218 Cannabis sativa HOM05D007454 ORTHO05D009382 4.0e-08 63.2 160 31.9
Prupe.1G470100 Prunus persica HOM05D010238 ORTHO05D010031 4.0e-08 63.2 95 37.9
Prupe.1G469600 Prunus persica HOM05D010238 ORTHO05D010031 5.2e-08 62.8 95 40.0
Prupe.1G470600 Prunus persica HOM05D010238 ORTHO05D010031 6.7e-08 62.4 93 39.8
Actinidia28329 Actinidia chinensis HOM05D010605 ORTHO05D010031 8.8e-08 62.0 82 41.5
Ciclev10010677m.g Citrus clementina HOM05D010238 ORTHO05D010031 1.2e-07 61.6 87 42.5
Sed0011711 Sechium edule HOM05D007454 ORTHO05D009382 1.2e-07 61.6 113 31.0
Cfa012265 Carpinus fangiana HOM05D010605 ORTHO05D010031 4.4e-07 59.7 63 50.8
Haze_08721 Corylus avellana HOM05D010605 ORTHO05D010031 4.4e-07 59.7 65 49.2
CDE10G0521 Ceratophyllum demersum HOM05D003548 ORTHO05D004066 5.7e-07 59.3 73 38.4
Hma1.2p1_0216F.1_g091240 Hydrangea macrophylla HOM05D010605 ORTHO05D010031 5.7e-07 59.3 82 39.0
Prupe.1G469800 Prunus persica HOM05D010238 ORTHO05D010031 5.7e-07 59.3 73 45.2
TPR.G27330 Trifolium pratense HOM05D007454 ORTHO05D009382 5.7e-07 59.3 64 51.6
Cfa012264 Carpinus fangiana HOM05D010605 ORTHO05D010031 7.5e-07 58.9 65 47.7
CDE06G2168 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 9.7e-07 58.5 32 71.9
Haze_08723 Corylus avellana HOM05D010605 ORTHO05D010031 9.7e-07 58.5 80 38.8
Haze_08725 Corylus avellana HOM05D010605 ORTHO05D010031 9.7e-07 58.5 80 38.8
Nitab4.5_0007456g0010 Nicotiana tabacum HOM05D010238 ORTHO05D010031 9.7e-07 58.5 96 38.5
Rhsim02G0192000 Rhododendron simsii HOM05D010927 ORTHO05D010031 9.7e-07 58.5 63 49.2
Dinv37573 Davidia involucrata HOM05D010605 ORTHO05D010031 1.7e-06 57.8 64 48.4
Solyc08g067700.1 Solanum lycopersicum HOM05D010238 ORTHO05D010031 1.7e-06 57.8 74 43.2
CiPaw.11G127100 Carya illinoinensis HOM05D010605 ORTHO05D010031 2.2e-06 57.4 80 37.5
Hma1.2p1_0175F.1_g077090 Hydrangea macrophylla HOM05D010238 ORTHO05D010031 2.2e-06 57.4 72 44.4
Nitab4.5_0003117g0010 Nicotiana tabacum HOM05D010238 ORTHO05D010031 2.2e-06 57.4 94 37.2
MBI01_g03566_MAGBIO Magnolia biondii HOM05D007454 ORTHO05D009382 3.7e-06 56.6 144 32.6
Dinv08500 Davidia involucrata HOM05D010605 ORTHO05D010031 4.8e-06 56.2 64 48.4
Psat5g027000 Pisum sativum HOM05D007454 ORTHO05D009382 4.8e-06 56.2 67 44.8
Actinidia13276 Actinidia chinensis HOM05D010238 ORTHO05D010031 6.3e-06 55.8 72 47.2
Prupe.1G470500 Prunus persica HOM05D010238 ORTHO05D010031 6.3e-06 55.8 95 35.8
QL02p032625 Quercus lobata HOM05D010605 ORTHO05D010031 6.3e-06 55.8 80 42.5
Prupe.1G470400 Prunus persica HOM05D010238 ORTHO05D010031 8.2e-06 55.5 95 34.7


User provided reference genes

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