Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.A00282 Erythranthe guttata HOM05D005141 ORTHO05D006250 1.7e-205 719.2 366 100.0
SalBow4G0713 Salvia bowleyana HOM05D005141 ORTHO05D006250 2.5e-137 492.7 389 71.0
MSTRG.25868 Avicennia marina HOM05D005141 ORTHO05D006250 9.6e-137 490.7 375 73.1
SGA_v2.0_scaffold27G11478 Striga asiatica HOM05D005141 ORTHO05D006250 3.7e-96 355.9 394 57.1
Nitab4.5_0005873g0030 Nicotiana tabacum HOM05D005141 ORTHO05D006250 6.7e-90 335.1 399 54.1
Nitab4.5_0011669g0010 Nicotiana tabacum HOM05D005141 ORTHO05D006250 3.7e-88 329.3 398 52.8
PGSC0003DMG400026089 Solanum tuberosum HOM05D005141 ORTHO05D006250 4.5e-86 322.4 405 52.1
Solyc06g065650.3 Solanum lycopersicum HOM05D005141 ORTHO05D006250 1.3e-85 320.9 405 51.6
Sopen06g024010 Solanum pennellii HOM05D005141 ORTHO05D006250 2.2e-85 320.1 405 51.6
Dinv30204 Davidia involucrata HOM05D005141 ORTHO05D006250 3.2e-84 316.2 391 52.7
Cc08_g08010 Coffea canephora HOM05D005141 ORTHO05D006250 4.2e-84 315.8 371 52.6
CAN.G199.28 Capsicum annuum HOM05D005141 ORTHO05D006250 1.5e-81 307.4 373 51.7
Lj7A714G44 Lonicera japonica HOM05D005141 ORTHO05D006250 2.2e-80 303.5 318 56.3
Peaxi162Scf00545g00034 Petunia axillaris HOM05D005141 ORTHO05D006250 8.2e-80 301.6 427 47.5
Oeu032487.3 Olea europaea HOM05D005141 ORTHO05D006250 2.9e-77 293.1 299 60.2
Oeu014659.3 Olea europaea HOM05D005141 ORTHO05D006250 1.1e-76 291.2 343 51.3
Potri.018G033700 Populus trichocarpa HOM05D005141 ORTHO05D006250 1.9e-76 290.4 363 49.9
GSVIVG01035797001 Vitis vinifera HOM05D005141 ORTHO05D006250 3.2e-76 289.7 412 48.8
Prupe.1G467500 Prunus persica HOM05D005141 ORTHO05D006250 2.7e-75 286.6 371 50.4
Haze_21614 Corylus avellana HOM05D005141 ORTHO05D006250 3.0e-74 283.1 397 48.4
Cfa021484 Carpinus fangiana HOM05D005141 ORTHO05D006250 5.2e-74 282.3 384 49.5
Sabra06G0193700 Salix brachista HOM05D005141 ORTHO05D006250 2.0e-73 280.4 371 49.1
Sabra18G0034600 Salix brachista HOM05D005141 ORTHO05D006250 2.0e-73 280.4 363 49.3
RcHm_v2.0_Chr6g0312851 Rosa chinensis HOM05D005141 ORTHO05D006250 2.6e-73 280.0 384 49.0
CiPaw.07G218200 Carya illinoinensis HOM05D005141 ORTHO05D006250 4.4e-73 279.3 399 46.6
CiPaw.08G014900 Carya illinoinensis HOM05D005141 ORTHO05D006250 9.7e-73 278.1 400 46.8
Hma1.2p1_0175F.1_g077130 Hydrangea macrophylla HOM05D005141 ORTHO05D006250 1.7e-72 277.3 371 49.9
FAN27G2430 Fragaria x ananassa HOM05D005141 ORTHO05D006250 4.8e-72 275.8 402 47.3
Thecc.09G145300 Theobroma cacao HOM05D005141 ORTHO05D006250 4.8e-72 275.8 377 47.7
FAN20G1096 Fragaria x ananassa HOM05D005141 ORTHO05D006250 6.3e-72 275.4 378 48.7
Manes.03G065500 Manihot esculenta HOM05D005141 ORTHO05D006250 5.3e-71 272.3 363 49.9
MD15G1116100 Malus domestica HOM05D005141 ORTHO05D006250 3.5e-70 269.6 377 48.8
QL12p031441 Quercus lobata HOM05D005141 ORTHO05D006250 3.5e-70 269.6 376 50.3
MD08G1137500 Malus domestica HOM05D005141 ORTHO05D006250 4.5e-70 269.2 373 48.3
Manes.16G067800 Manihot esculenta HOM05D005141 ORTHO05D006250 5.9e-70 268.9 364 48.9
Actinidia13429 Actinidia chinensis HOM05D005141 ORTHO05D006250 7.7e-70 268.5 368 49.5
FAN15G0409 Fragaria x ananassa HOM05D005141 ORTHO05D006250 7.7e-70 268.5 402 46.0
FAN24G3348 Fragaria x ananassa HOM05D005141 ORTHO05D006250 1.3e-69 267.7 402 46.3
Duzib187G0541 Durio zibethinus HOM05D005141 ORTHO05D006250 1.1e-68 264.6 376 46.8
TWI32G0021 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 5.5e-68 262.3 372 48.1
Atru.chr7.2334 Acer truncatum HOM05D005141 ORTHO05D006250 6.8e-66 255.4 319 49.2
CANSAT25G3062 Cannabis sativa HOM05D005141 ORTHO05D006250 1.5e-65 254.2 380 46.1
vmacro11124 Vaccinium macrocarpon HOM05D005141 ORTHO05D006250 2.6e-65 253.4 336 49.7
TWI34G0135 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 3.4e-65 253.1 334 49.4
TAR383G0458 Trochodendron aralioides HOM05D005141 ORTHO05D006250 4.4e-65 252.7 372 47.3
Eucgr.C01809 Eucalyptus grandis HOM05D005141 ORTHO05D006250 5.7e-65 252.3 377 45.6
TAR626G1320 Trochodendron aralioides HOM05D005141 ORTHO05D006250 7.5e-65 251.9 389 45.0
VMungo1309G3073 Vigna mungo HOM05D005141 ORTHO05D006250 9.8e-65 251.5 357 47.6
HanXRQChr02g0050641 Helianthus annuus HOM05D005141 ORTHO05D006250 1.3e-64 251.1 337 49.9
Rhsim02G0188600 Rhododendron simsii HOM05D005141 ORTHO05D006250 3.7e-64 249.6 315 51.1
ECA233G0036 Erigeron canadensis HOM05D005141 ORTHO05D006250 8.3e-64 248.4 363 46.3
Gorai.009G011200 Gossypium raimondii HOM05D005141 ORTHO05D006250 8.3e-64 248.4 376 45.2
Ciclev10008356m.g Citrus clementina HOM05D005141 ORTHO05D006250 1.1e-63 248.1 411 46.0
Potri.006G247500 Populus trichocarpa HOM05D005141 ORTHO05D006250 1.4e-63 247.7 294 52.0
Nn2g11855 Nelumbo nucifera HOM05D005141 ORTHO05D006250 2.4e-63 246.9 385 45.5
arahy.Tifrunner.gnm1.ann1.WUI646 Arachis hypogaea HOM05D005141 ORTHO05D006250 3.1e-63 246.5 349 44.7
Glyma.06G072700 Glycine max HOM05D005141 ORTHO05D006250 1.2e-62 244.6 358 45.5
Medtr3g107950 Medicago truncatula HOM05D005141 ORTHO05D006250 3.5e-62 243.0 357 45.9
Phvul.009G097300 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 3.5e-62 243.0 357 45.4
Duzib150G1154 Durio zibethinus HOM05D005141 ORTHO05D006250 4.5e-62 242.7 424 41.7
Duzib168G0094 Durio zibethinus HOM05D005141 ORTHO05D006250 2.9e-61 240.0 402 42.5
DCAR_022871 Daucus carota HOM05D005141 ORTHO05D006250 3.8e-61 239.6 361 45.7
Lj1g0018494 Lotus japonicus HOM05D005141 ORTHO05D006250 6.5e-61 238.8 356 44.7
Lalb_Chr23g0268881 Lupinus albus HOM05D005141 ORTHO05D006250 6.5e-61 238.8 364 43.1
Glyma.04G071400 Glycine max HOM05D005141 ORTHO05D006250 5.5e-60 235.7 376 44.1
Ca_15703_v3 Cicer arietinum L. HOM05D005141 ORTHO05D006250 9.5e-60 235.0 370 45.1
ClCG08G012940 Citrullus lanatus HOM05D005141 ORTHO05D006250 2.8e-59 233.4 384 45.1
TPR.G34685 Trifolium pratense HOM05D005141 ORTHO05D006250 3.6e-59 233.0 360 44.4
arahy.Tifrunner.gnm1.ann1.29TRSQ Arachis hypogaea HOM05D005141 ORTHO05D006250 3.0e-58 229.9 387 40.6
Gohir.A05G010100 Gossypium hirsutum HOM05D005141 ORTHO05D006250 3.0e-58 229.9 375 43.5
Cpa.g.sc91.20 Carica papaya HOM05D005141 ORTHO05D006250 6.8e-58 228.8 330 47.6
Lsat_1_v5_gn_1_43100 Lactuca sativa HOM05D005141 ORTHO05D006250 2.6e-57 226.9 354 43.8
FvH4_2g30050 Fragaria vesca HOM05D005141 ORTHO05D006250 4.9e-56 222.6 332 46.7
HanXRQChr13g0402161 Helianthus annuus HOM05D005141 ORTHO05D006250 1.8e-55 220.7 337 45.4
Lalb_Chr08g0243831 Lupinus albus HOM05D005141 ORTHO05D006250 2.4e-55 220.3 364 42.6
Gohir.D05G010800 Gossypium hirsutum HOM05D005141 ORTHO05D006250 9.2e-55 218.4 376 42.6
Sed0000645 Sechium edule HOM05D005141 ORTHO05D006250 4.5e-54 216.1 416 39.7
Actinidia13280 Actinidia chinensis HOM05D005141 ORTHO05D006250 6.6e-53 212.2 252 53.2
PSO782G1260 Papaver somniferum HOM05D005141 ORTHO05D006250 8.6e-53 211.8 401 40.4
Dinv11587 Davidia involucrata HOM05D005141 ORTHO05D006250 1.5e-52 211.1 227 55.9
COL.COLO4_24046 Corchorus olitorius HOM05D005141 ORTHO05D006250 2.5e-52 210.3 245 53.5
TAR636G0300 Trochodendron aralioides HOM05D005141 ORTHO05D006250 2.8e-51 206.8 387 41.9
EL10Ac2g02550 Beta vulgaris HOM05D005141 ORTHO05D006250 4.7e-51 206.1 304 47.0
PSO063G0687 Papaver somniferum HOM05D005141 ORTHO05D006250 3.4e-49 199.9 354 42.4
Lsat_1_v5_gn_6_22941 Lactuca sativa HOM05D005141 ORTHO05D006250 4.4e-49 199.5 360 43.6
unitig_37.g12225 Utricularia gibba HOM05D005141 ORTHO05D006250 9.8e-49 198.4 339 45.7
Psat0s1782g0240 Pisum sativum HOM05D005141 ORTHO05D006250 3.2e-47 193.4 292 44.2
MELO3C011217.2 Cucumis melo HOM05D005141 ORTHO05D006250 4.1e-47 193.0 436 37.2
MBI04_g39529_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 4.6e-46 189.5 318 43.1
ClCG05G017130 Citrullus lanatus HOM05D005141 ORTHO05D006250 1.7e-45 187.6 356 41.3
Phvul.001G055100 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 2.3e-45 187.2 341 40.5
Sed0008448 Sechium edule HOM05D005141 ORTHO05D006250 3.0e-45 186.8 330 42.4
Nn8g39307 Nelumbo nucifera HOM05D005141 ORTHO05D006250 1.9e-44 184.1 313 43.5
AUR62024850 Chenopodium quinoa HOM05D005141 ORTHO05D006250 2.5e-44 183.7 304 44.4
MELO3C003675.2 Cucumis melo HOM05D005141 ORTHO05D006250 2.1e-43 180.6 328 41.5
CsaV3_3G046630 Cucumis sativus L. HOM05D005141 ORTHO05D006250 8.0e-43 178.7 328 41.5
MBI01_g37337_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 9.2e-39 165.2 299 40.5
CsaV3_2G031660 Cucumis sativus L. HOM05D005141 ORTHO05D006250 3.1e-34 150.2 235 41.3
THA.LOC104803820 Tarenaya hassleriana HOM05D005141 ORTHO05D006250 3.1e-34 150.2 327 39.8
ATR0083G007 Amborella trichopoda HOM05D005141 ORTHO05D006250 8.9e-34 148.7 324 38.9
PGR031G2456 Punica granatum HOM05D005141 ORTHO05D006250 4.4e-33 146.4 418 34.2
AT4G32570 Arabidopsis thaliana HOM05D005141 ORTHO05D006250 8.3e-32 142.1 324 36.7
Carub.0007s0798 Capsella rubella HOM05D005141 ORTHO05D006250 1.1e-31 141.7 312 37.5
unitig_46.g18533 Utricularia gibba HOM05D005141 ORTHO05D006250 1.1e-31 141.7 248 42.3
Aa31LG4G11720 Aethionema arabicum HOM05D005141 ORTHO05D006250 2.4e-31 140.6 357 34.2
Sp7g30350 Schrenkiella parvula HOM05D005141 ORTHO05D006250 5.4e-31 139.4 331 36.6
AL7G19190 Arabidopsis lyrata HOM05D005141 ORTHO05D006250 1.2e-30 138.3 308 37.3
Thhalv10025562m.g Eutrema salsugineum HOM05D005141 ORTHO05D006250 1.7e-29 134.4 313 37.4
BraA08t33764Z Brassica rapa HOM05D005141 ORTHO05D006250 3.0e-29 133.7 313 36.1
A08p18120 Brassica napus HOM05D005141 ORTHO05D006250 3.9e-29 133.3 313 35.8
BcaB03g12752 Brassica carinata HOM05D005141 ORTHO05D006250 5.1e-29 132.9 316 35.4
BcaC01g01013 Brassica carinata HOM05D005141 ORTHO05D006250 8.6e-29 132.1 311 36.7
A01p05810 Brassica napus HOM05D005141 ORTHO05D006250 8.6e-29 132.1 318 38.4
BraA01t00550Z Brassica rapa HOM05D005141 ORTHO05D006250 8.6e-29 132.1 318 39.0
C01p06380 Brassica napus HOM05D005141 ORTHO05D006250 1.9e-28 131.0 304 38.8
C03p87260 Brassica napus HOM05D005141 ORTHO05D006250 3.3e-28 130.2 312 36.2
BolC3t21027H Brassica oleracea HOM05D005141 ORTHO05D006250 3.3e-28 130.2 312 36.2
HPP92_009098 Vanilla planifolia HOM05D005141 ORTHO05D006250 7.3e-28 129.0 320 37.8
BolC1t00634H Brassica oleracea HOM05D005141 ORTHO05D006250 2.8e-27 127.1 304 38.5
SHI18604 Sapria himalayana HOM05D005141 ORTHO05D006250 2.3e-26 124.0 271 37.6
BcaC09g52048 Brassica carinata HOM05D005141 ORTHO05D006250 3.1e-26 123.6 349 34.1
Aqoxy7G01897 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 3.5e-22 110.2 219 40.6
SEGI_18535 Sequoiadendron giganteum HOM05D005141 ORTHO05D006250 7.8e-22 109.0 120 51.7
Glyma.17G205200 Glycine max HOM05D005141 ORTHO05D006250 1.0e-21 108.6 190 38.4
AagrBONN_evm.TU.Sc2ySwM_117.408 Anthoceros agrestis HOM05D005141 ORTHO05D006250 2.1e-19 100.9 148 45.3
Pp3c22_12420 Physcomitrium patens HOM05D005141 ORTHO05D006250 1.4e-18 98.2 149 44.3
SMO143G0273 Selaginella moellendorffii HOM05D005141 ORTHO05D006250 3.4e-17 93.6 149 42.3
Mapoly0079s0053 Marchantia polymorpha HOM05D005141 ORTHO05D006250 4.4e-17 93.2 177 37.9
Pp3c19_8700 Physcomitrium patens HOM05D005141 ORTHO05D006250 4.4e-17 93.2 152 42.8
Ah.10g025860 Amaranthus hybridus HOM05D005141 ORTHO05D006250 5.4e-15 86.3 184 37.5
CSS0000568 Camellia sinensis var. sinensis HOM05D005141 ORTHO05D006250 1.6e-14 84.7 89 55.1
Aqoxy81s001 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 6.0e-14 82.8 88 52.3
BcaC08g44885 Brassica carinata HOM05D005141 ORTHO05D006250 7.6e-09 65.9 161 33.5
Haze_10527 Corylus avellana HOM05D005141 ORTHO05D006250 2.9e-08 63.9 76 44.7
A06p26660 Brassica napus HOM05D005141 ORTHO05D006250 6.4e-08 62.8 161 31.7
C06p25010 Brassica napus HOM05D000698 ORTHO05D006250 2.1e-06 57.8 185 31.4
C07p35200 Brassica napus HOM05D005141 ORTHO05D006250 2.1e-06 57.8 59 52.5
BolC7t44052H Brassica oleracea HOM05D005141 ORTHO05D006250 2.1e-06 57.8 59 52.5
BolC9t58511H Brassica oleracea HOM05D005141 ORTHO05D006250 2.1e-06 57.8 59 52.5


User provided reference genes

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