Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.A00257 Erythranthe guttata HOM05D004019 ORTHO05D005136 0.0e+00 4903.6 2509 100.0
MSTRG.25887 Avicennia marina HOM05D004019 ORTHO05D005136 0.0e+00 4097.7 2511 82.9
SGA_v2.0_scaffold280G46835 Striga asiatica HOM05D004019 ORTHO05D005136 0.0e+00 3705.2 2581 76.3
Dinv14207 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 3620.9 2540 73.8
Dinv30236 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 3583.5 2541 73.4
CSS0034867 Camellia sinensis var. sinensis HOM05D004019 ORTHO05D005136 0.0e+00 3547.3 2549 72.7
Actinidia13300 Actinidia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3535.0 2518 72.3
Ciclev10007225m.g Citrus clementina HOM05D004019 ORTHO05D005136 0.0e+00 3457.9 2539 70.3
GSVIVG01035749001 Vitis vinifera HOM05D004019 ORTHO05D005136 0.0e+00 3440.6 2520 70.7
Prupe.1G464500 Prunus persica HOM05D004019 ORTHO05D005136 0.0e+00 3435.2 2554 69.5
RcHm_v2.0_Chr6g0312581 Rosa chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3431.3 2550 69.7
FvH4_2g30330 Fragaria vesca HOM05D004019 ORTHO05D005136 0.0e+00 3423.6 2540 69.5
COL.COLO4_18737 Corchorus olitorius HOM05D004019 ORTHO05D005136 0.0e+00 3415.6 2552 69.6
Atru.chr7.2305 Acer truncatum HOM05D004019 ORTHO05D005136 0.0e+00 3412.5 2549 69.4
FAN24G2881 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 3407.1 2565 68.9
TAR624G1332 Trochodendron aralioides HOM05D004019 ORTHO05D005136 0.0e+00 3396.7 2579 68.6
Thecc.09G037700 Theobroma cacao HOM05D004019 ORTHO05D005136 0.0e+00 3388.6 2551 68.9
Sopen08g021930 Solanum pennellii HOM05D004019 ORTHO05D005136 0.0e+00 3385.9 2527 69.4
Gorai.009G053000 Gossypium raimondii HOM05D004019 ORTHO05D005136 0.0e+00 3381.7 2550 68.8
TWI63G0705 Tripterygium wilfordii HOM05D004019 ORTHO05D005136 0.0e+00 3377.8 2556 69.1
MD15G1113500 Malus domestica HOM05D004019 ORTHO05D005136 0.0e+00 3369.7 2579 67.9
CiPaw.07G216600 Carya illinoinensis HOM05D004019 ORTHO05D005136 0.0e+00 3365.9 2547 68.7
Potri.006G244900 Populus trichocarpa HOM05D004019 ORTHO05D005136 0.0e+00 3365.5 2557 68.5
Cc08_g08140 Coffea canephora HOM05D004019 ORTHO05D005136 0.0e+00 3365.1 2354 73.6
Rhsim02G0185100 Rhododendron simsii HOM05D004019 ORTHO05D005136 0.0e+00 3353.5 2842 63.6
Nn8g39221 Nelumbo nucifera HOM05D004019 ORTHO05D005136 0.0e+00 3337.4 2541 68.2
HanXRQChr17g0539391 Helianthus annuus HOM05D004019 ORTHO05D005136 0.0e+00 3326.6 2555 68.3
Lj1g0020850 Lotus japonicus HOM05D004019 ORTHO05D005136 0.0e+00 3324.3 2512 68.6
Glyma.06G074700 Glycine max HOM05D004019 ORTHO05D005136 0.0e+00 3321.2 2517 68.5
Lalb_Chr11g0064021 Lupinus albus HOM05D004019 ORTHO05D005136 0.0e+00 3318.5 2522 68.4
CANSAT25G1365 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 3318.1 2554 67.0
Ca_15687_v3 Cicer arietinum L. HOM05D004019 ORTHO05D005136 0.0e+00 3306.5 2518 68.1
arahy.Tifrunner.gnm1.ann1.WYF2AC Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 3293.4 2539 67.8
CANSAT56G4370 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 3286.1 2560 66.4
Psat5g025600 Pisum sativum HOM05D004019 ORTHO05D005136 0.0e+00 3272.6 2517 67.5
Medtr3g108360 Medicago truncatula HOM05D004019 ORTHO05D005136 0.0e+00 3268.4 2515 67.5
TPR.G12417 Trifolium pratense HOM05D004019 ORTHO05D005136 0.0e+00 3267.2 2511 67.3
Sabra06G0191800 Salix brachista HOM05D004019 ORTHO05D005136 0.0e+00 3247.6 2605 65.7
Eucgr.C01572 Eucalyptus grandis HOM05D004019 ORTHO05D005136 0.0e+00 3246.8 2542 66.9
Aqoxy7G01749 Aquilegia oxysepala HOM05D004019 ORTHO05D005136 0.0e+00 3216.4 2540 65.6
PGR031G1071 Punica granatum HOM05D004019 ORTHO05D005136 0.0e+00 3211.8 2527 67.0
Lsat_1_v5_gn_3_27801 Lactuca sativa HOM05D004019 ORTHO05D005136 0.0e+00 3211.4 2594 66.0
arahy.Tifrunner.gnm1.ann1.P4KF2E Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 3197.9 2526 66.7
ECA246G1280 Erigeron canadensis HOM05D004019 ORTHO05D005136 0.0e+00 3194.1 2566 66.1
CsaV3_3G046830 Cucumis sativus L. HOM05D004019 ORTHO05D005136 0.0e+00 3177.5 2557 64.8
Sed0026885 Sechium edule HOM05D004019 ORTHO05D005136 0.0e+00 3132.0 2548 64.1
PSO782G0289 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 3118.9 2560 64.3
PSO063G5962 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 3117.0 2563 64.4
Sc09g0008920 Simmondsia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3112.8 2522 64.8
THA.LOC104803772 Tarenaya hassleriana HOM05D004019 ORTHO05D005136 0.0e+00 3109.3 2550 64.0
Phvul.009G099400 Phaseolus vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 3102.4 2234 71.8
AT2G25730 Arabidopsis thaliana HOM05D004019 ORTHO05D005136 0.0e+00 3020.3 2526 62.6
AL4G17350 Arabidopsis lyrata HOM05D004019 ORTHO05D005136 0.0e+00 3014.6 2523 62.7
AUR62024824 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 3000.7 2527 63.0
CARHR115530 Cardamine hirsuta HOM05D004019 ORTHO05D005136 0.0e+00 2999.1 2523 62.7
Carub.0004s0550 Capsella rubella HOM05D004019 ORTHO05D005136 0.0e+00 2997.2 2533 62.2
EL10Ac2g02527 Beta vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 2994.5 2539 62.9
Sp4g05330 Schrenkiella parvula HOM05D004019 ORTHO05D005136 0.0e+00 2992.6 2537 62.1
AUR62032391 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 2983.0 2528 62.7
ATR1120G055 Amborella trichopoda HOM05D004019 ORTHO05D005136 0.0e+00 2970.3 2548 62.2
C03p32450 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 2956.0 2519 62.0
A03p27040 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 2955.6 2520 62.1
BolC3t15586H Brassica oleracea HOM05D004019 ORTHO05D005136 0.0e+00 2941.8 2551 61.4
BraA03t11915Z Brassica rapa HOM05D004019 ORTHO05D005136 0.0e+00 2937.9 2548 61.4
MBI03_g19627_MAGBIO Magnolia biondii HOM05D004019 ORTHO05D005136 0.0e+00 2924.8 2410 64.4
Lj8C607G10 Lonicera japonica HOM05D004019 ORTHO05D005136 0.0e+00 2885.9 1875 78.3
Aa31LG5G9950 Aethionema arabicum HOM05D004019 ORTHO05D005136 0.0e+00 2851.2 2561 59.9
Manes.03G064200 Manihot esculenta HOM05D004019 ORTHO05D005136 0.0e+00 2843.5 2092 70.5
Thhalv10000005m.g Eutrema salsugineum HOM05D004019 ORTHO05D005136 0.0e+00 2814.6 2238 65.5
QL12p030977 Quercus lobata HOM05D004019 ORTHO05D005136 0.0e+00 2733.4 1891 74.1
MELO3C003655.2 Cucumis melo HOM05D004019 ORTHO05D005136 0.0e+00 2671.7 2038 67.7
VMungo1309G1295 Vigna mungo HOM05D004019 ORTHO05D005136 0.0e+00 2538.5 1735 74.6
Gohir.D05G051300 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 2494.9 1647 77.0
Oeu063261.5 Olea europaea HOM05D004019 ORTHO05D005136 0.0e+00 2458.3 1725 75.0
unitig_747.g21875 Utricularia gibba HOM05D004019 ORTHO05D005136 0.0e+00 2286.5 1695 70.5
Zm00001eb161040 Zea mays HOM05D004019 ORTHO05D005136 0.0e+00 2284.6 2292 54.8
DCAR_006256 Daucus carota HOM05D004019 ORTHO05D005136 0.0e+00 2224.5 1779 66.8
FAN20G0521 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 2218.0 1837 63.1
Pp3c19_2530 Physcomitrium patens HOM05D004019 ORTHO05D005136 0.0e+00 2073.9 2701 46.0
Gohir.A05G049400 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 2055.4 1743 62.2
Mapoly0049s0060 Marchantia polymorpha HOM05D004019 ORTHO05D005136 0.0e+00 2053.5 2780 44.5
Solyc08g068010.2 Solanum lycopersicum HOM05D004019 ORTHO05D005136 0.0e+00 1714.1 1144 76.7
SMO172G0089 Selaginella moellendorffii HOM05D004019 ORTHO05D005136 0.0e+00 1692.2 2551 41.8
Hma1.2p1_0140F.1_g063770 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 1685.2 1181 73.8
Hma1.2p1_0140F.1_g063760 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 1669.1 1191 71.8
Ah.12g060340 Amaranthus hybridus HOM05D004019 ORTHO05D005136 0.0e+00 1634.0 1423 62.5
Cpa.g.sc205.26 Carica papaya HOM05D004019 ORTHO05D005136 0.0e+00 1621.7 1086 76.1
Nitab4.5_0000250g0110 Nicotiana tabacum HOM05D004019 ORTHO05D005136 0.0e+00 1612.0 1486 59.2
Peaxi162Scf00105g00818 Petunia axillaris HOM05D004019 ORTHO05D005136 0.0e+00 1571.2 1141 72.0
vmacro08818 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 0.0e+00 1546.9 1161 70.9
CBR_g31401 Chara braunii HOM05D004019 ORTHO05D005136 0.0e+00 1498.0 2778 37.2
Nitab4.5_0002393g0030 Nicotiana tabacum HOM05D004019 ORTHO05D005136 0.0e+00 1453.7 1476 55.4
AagrBONN_evm.TU.Sc2ySwM_340.130 Anthoceros agrestis HOM05D004019 ORTHO05D005136 0.0e+00 1441.0 2673 37.0
FAN20G1524 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 1388.2 853 81.8
CDE10G0881 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 0.0e+00 1372.8 1606 48.9
SEGI_05898 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 0.0e+00 1345.1 1191 60.8
HPP92_006443 Vanilla planifolia HOM05D004019 ORTHO05D005136 0.0e+00 1275.0 1169 59.5
Gohir.A05G049350 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 1230.3 744 82.7
CDE10G0547 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 0.0e+00 1214.9 900 68.2
vmacro11105 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 1.1e-308 1064.7 672 80.5
Haze_21654 Corylus avellana HOM05D004019 ORTHO05D005136 1.9e-276 957.6 618 78.8
HPP92_006442 Vanilla planifolia HOM05D004019 ORTHO05D005136 2.0e-273 947.6 1110 49.4
vmacro11102 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 2.6e-270 937.2 1010 52.5
SHI11646 Sapria himalayana HOM05D004019 ORTHO05D000023 1.6e-235 821.6 1056 46.9
Haze_21655 Corylus avellana HOM05D004019 ORTHO05D005136 8.0e-235 819.3 637 67.5
Ah.12g060350 Amaranthus hybridus HOM05D004019 ORTHO05D005136 1.5e-220 771.9 887 50.8
Peaxi162Scf00105g00812 Petunia axillaris HOM05D004019 ORTHO05D005136 5.1e-205 720.3 638 58.8
Solyc08g068040.3 Solanum lycopersicum HOM05D004019 ORTHO05D005136 5.6e-204 716.8 651 58.7
Haze_21656 Corylus avellana HOM05D004019 ORTHO05D005136 1.4e-199 702.2 912 45.2
Nitab4.5_0000250g0120 Nicotiana tabacum HOM05D004019 ORTHO05D005136 9.3e-199 699.5 842 50.8
SalBow4G2655 Salvia bowleyana HOM05D004019 ORTHO05D005136 6.4e-192 676.8 479 71.8
Cpa.g.sc205.24 Carica papaya HOM05D004019 ORTHO05D005136 1.7e-184 652.1 500 67.4
Peaxi162Scf00105g00817 Petunia axillaris HOM05D004019 ORTHO05D005136 6.7e-181 640.2 493 66.5
Nitab4.5_0002393g0010 Nicotiana tabacum HOM05D004019 ORTHO05D005136 9.7e-180 636.3 384 82.6
SHI11647 Sapria himalayana HOM05D004019 ORTHO05D005136 1.9e-172 612.1 840 43.1
QL12p030952 Quercus lobata HOM05D004019 ORTHO05D005136 1.7e-171 609.0 735 48.4
Hund02996 Selenicereus undatus HOM05D004019 ORTHO05D005136 4.8e-171 607.4 614 57.2
ClCG05G017320 Citrullus lanatus HOM05D004019 ORTHO05D005136 2.6e-156 558.5 679 46.2
vmacro11103 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 8.2e-155 553.5 553 55.2
DCAR_006255 Daucus carota HOM05D004019 ORTHO05D005136 1.4e-154 552.7 502 61.2
Cpa.g.sc205.19 Carica papaya HOM05D004019 ORTHO05D005136 2.9e-144 518.5 485 55.9
Os01g0593000 Oryza sativa ssp. japonica HOM05D004019 ORTHO05D005136 1.1e-114 420.2 264 76.5
SEGI_01785 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 1.7e-112 412.9 513 44.6
unitig_747.g21874 Utricularia gibba HOM05D004019 ORTHO05D005136 2.6e-108 399.1 346 60.7
vmacro11104 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 4.3e-103 381.7 239 82.4
Hma1.2p1_0140F.1_g063780 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 2.8e-94 352.4 204 88.7
Nitab4.5_0000250g0090 Nicotiana tabacum HOM05D004019 ORTHO05D005136 2.4e-93 349.4 180 93.3
unitig_747.g21873 Utricularia gibba HOM05D004019 ORTHO05D005136 7.1e-90 337.8 281 62.3
Ah.12g060330 Amaranthus hybridus HOM05D004019 ORTHO05D005136 1.5e-87 330.1 180 87.2
Haze_21653 Corylus avellana HOM05D004019 ORTHO05D005136 3.8e-83 315.5 219 72.1
Cfa013229 Carpinus fangiana HOM05D004019 ORTHO05D005136 3.5e-81 308.9 264 62.1
vmacro11106 Vaccinium macrocarpon HOM05D005362 ORTHO05D006895 7.9e-81 307.8 233 66.5
DCAR_006257 Daucus carota HOM05D004019 ORTHO05D005136 4.5e-76 292.0 151 95.4
SEGI_29718 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 2.5e-74 286.2 158 87.3
Cc08_g08730 Coffea canephora HOM05D000021 ORTHO05D000010 2.6e-68 266.2 287 52.6
Cc00_g31360 Coffea canephora HOM05D004019 ORTHO05D005136 4.2e-66 258.8 307 49.5
DCAR_006254 Daucus carota HOM05D004019 ORTHO05D005136 5.5e-66 258.5 284 50.4
SHI11644 Sapria himalayana HOM05D004019 ORTHO05D000014 5.5e-66 258.5 227 60.8
Cpa.g.sc205.16 Carica papaya HOM05D004019 ORTHO05D005136 3.7e-54 219.2 319 42.9
Nitab4.5_0000250g0100 Nicotiana tabacum HOM05D004019 ORTHO05D005136 6.1e-49 201.8 216 54.6
SHI11640 Sapria himalayana HOM05D004019 ORTHO05D000023 7.4e-47 194.9 255 42.7
Hma1.2p1_0140F.1_g063800 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 2.0e-39 170.2 116 75.0
HanXRQChr03g0075941 Helianthus annuus HOM05D004019 ORTHO05D005136 2.6e-36 159.8 105 76.2
AUR62038490 Chenopodium quinoa HOM05D004019 ORTHO05D005136 5.9e-36 158.7 116 74.1
Oeu022768.1 Olea europaea HOM05D004019 ORTHO05D005136 1.3e-35 157.5 119 67.2
PRCOL_00001920 Prasinoderma coloniale HOM05D004019 ORTHO05D005136 1.7e-35 157.1 1537 22.3
Solyc08g068030.1 Solanum lycopersicum HOM05D004019 ORTHO05D005136 1.1e-34 154.5 143 56.6
PGR042G0250 Punica granatum HOM05D004019 ORTHO05D005136 2.7e-28 133.3 142 49.3
MD00G1060000 Malus domestica HOM05D004019 ORTHO05D005136 6.1e-25 122.1 101 70.3
MD08G1211900 Malus domestica HOM05D004019 ORTHO05D005136 6.1e-25 122.1 101 70.3
Lsat_1_v5_gn_4_165520 Lactuca sativa HOM05D004019 ORTHO05D005136 1.0e-24 121.3 139 49.6
Prupe.5G099400 Prunus persica HOM05D004019 ORTHO05D005136 7.5e-23 115.2 87 66.7
Actinidia14324 Actinidia chinensis HOM05D004019 ORTHO05D005136 2.9e-19 103.2 129 55.0
Hund02993 Selenicereus undatus HOM05D004019 ORTHO05D000004 2.8e-17 96.7 79 65.8
Actinidia31247 Actinidia chinensis HOM05D004019 ORTHO05D005136 3.6e-17 96.3 73 74.0
Medtr3g108370 Medicago truncatula HOM05D004019 ORTHO05D005136 5.2e-16 92.4 167 39.5
Actinidia36698 Actinidia chinensis HOM05D004019 ORTHO05D005136 8.9e-16 91.7 123 52.8
FvH4_2g30290 Fragaria vesca HOM05D004019 ORTHO05D035247 1.3e-14 87.8 67 62.7
FAN24G2522 Fragaria x ananassa HOM05D004019 ORTHO05D035247 1.3e-14 87.8 67 62.7
SHI11643 Sapria himalayana HOM05D004019 ORTHO05D035247 1.7e-14 87.4 102 47.1
Haze_21651 Corylus avellana HOM05D004019 ORTHO05D005136 3.7e-14 86.3 45 91.1
FvH4_2g30421 Fragaria vesca HOM05D004019 ORTHO05D035788 5.4e-13 82.4 76 55.3
Cc08_g08790 Coffea canephora HOM05D004019 ORTHO05D005136 9.2e-13 81.6 63 65.1
TPR.G12424 Trifolium pratense HOM05D004019 ORTHO05D005136 2.0e-12 80.5 88 47.7
Cc00_g28950 Coffea canephora HOM05D004019 ORTHO05D005136 4.6e-12 79.3 53 69.8
Glyma.04G073626 Glycine max HOM05D004019 ORTHO05D005136 2.9e-11 76.6 51 72.5
Cpa.g.sc205.23 Carica papaya HOM05D004019 ORTHO05D005136 5.0e-11 75.9 73 63.0
Medtr3g109982 Medicago truncatula HOM05D000051 ORTHO05D000015 6.6e-11 75.5 204 31.4
Hund02997 Selenicereus undatus HOM05D004019 ORTHO05D005136 1.9e-10 73.9 48 75.0
Actinidia23592 Actinidia chinensis HOM05D004019 ORTHO05D005136 3.3e-10 73.2 66 65.2
Prupe.5G112400 Prunus persica HOM05D004019 ORTHO05D005136 9.5e-10 71.6 128 40.6
Nitab4.5_0005144g0040 Nicotiana tabacum HOM05D004019 ORTHO05D005136 6.8e-08 65.5 70 52.9
Medtr3g107940 Medicago truncatula HOM05D004019 ORTHO05D000015 8.9e-08 65.1 104 38.5
Potri.018G035601 Populus trichocarpa HOM05D004019 ORTHO05D005136 8.9e-08 65.1 52 61.5
TPR.G26502 Trifolium pratense HOM05D000051 ORTHO05D000015 3.4e-07 63.2 101 42.6


User provided reference genes

Program Settings