Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.A00251 Erythranthe guttata HOM05D004975 ORTHO05D005963 2.2e-117 425.6 215 100.0
MSTRG.11721 Avicennia marina HOM05D004975 ORTHO05D005963 2.5e-92 342.4 220 78.2
SGA_v2.0_scaffold27G11528 Striga asiatica HOM05D004975 ORTHO05D005963 1.3e-88 330.1 215 78.1
SGA_v2.0_scaffold229G43318 Striga asiatica HOM05D004975 ORTHO05D005963 2.8e-88 328.9 204 80.9
Cc08_g08560 Coffea canephora HOM05D004975 ORTHO05D005963 2.9e-85 318.9 222 73.4
CSS0002597 Camellia sinensis var. sinensis HOM05D004975 ORTHO05D005963 1.5e-84 316.6 215 74.0
Hma1.2p1_0140F.1_g063690 Hydrangea macrophylla HOM05D004975 ORTHO05D005963 2.5e-84 315.8 217 73.3
Dinv30242 Davidia involucrata HOM05D004975 ORTHO05D005963 2.1e-83 312.8 218 72.9
Actinidia13417 Actinidia chinensis HOM05D004975 ORTHO05D005963 1.4e-82 310.1 215 74.0
Ciclev10009422m.g Citrus clementina HOM05D004975 ORTHO05D005963 6.7e-82 307.8 224 69.6
Nitab4.5_0002393g0070 Nicotiana tabacum HOM05D004975 ORTHO05D005963 8.8e-82 307.4 215 73.5
Actinidia13302 Actinidia chinensis HOM05D004975 ORTHO05D005963 1.5e-81 306.6 216 73.6
Nitab4.5_0000250g0160 Nicotiana tabacum HOM05D004975 ORTHO05D005963 2.0e-81 306.2 215 74.0
Sed0019969 Sechium edule HOM05D004975 ORTHO05D005963 4.4e-81 305.1 215 69.8
Peaxi162Scf00105g00510 Petunia axillaris HOM05D004975 ORTHO05D005963 7.5e-81 304.3 215 72.1
Solyc08g065760.3 Solanum lycopersicum HOM05D004975 ORTHO05D005963 7.5e-81 304.3 219 71.7
Sopen10g033590 Solanum pennellii HOM05D004975 ORTHO05D005963 7.5e-81 304.3 219 71.7
CiPaw.01G062200 Carya illinoinensis HOM05D004975 ORTHO05D005963 1.3e-80 303.5 205 72.7
Gohir.A07G060900 Gossypium hirsutum HOM05D004975 ORTHO05D005963 2.8e-80 302.4 215 70.7
PGSC0003DMG400013829 Solanum tuberosum HOM05D004975 ORTHO05D005963 2.8e-80 302.4 219 71.2
Atru.chr7.2646 Acer truncatum HOM05D004975 ORTHO05D005963 3.7e-80 302.0 209 71.8
CiPaw.08G019900 Carya illinoinensis HOM05D004975 ORTHO05D005963 4.8e-80 301.6 222 69.4
Gorai.001G069100 Gossypium raimondii HOM05D004975 ORTHO05D005963 4.8e-80 301.6 215 70.7
ClCG10G000990 Citrullus lanatus HOM05D004975 ORTHO05D005963 6.3e-80 301.2 189 76.7
THA.LOC104803875 Tarenaya hassleriana HOM05D004975 ORTHO05D005963 1.1e-79 300.4 216 70.4
Thecc.09G007400 Theobroma cacao HOM05D004975 ORTHO05D005963 1.1e-79 300.4 189 76.7
unitig_46.g18530 Utricularia gibba HOM05D004975 ORTHO05D005963 1.1e-79 300.4 179 80.4
CsaV3_3G001030 Cucumis sativus L. HOM05D004975 ORTHO05D005963 1.4e-79 300.1 192 75.0
COL.COLO4_19031 Corchorus olitorius HOM05D004975 ORTHO05D005963 3.1e-79 298.9 221 69.2
DCAR_007697 Daucus carota HOM05D004975 ORTHO05D005963 5.3e-79 298.1 215 69.3
Duzib187G1289 Durio zibethinus HOM05D004975 ORTHO05D005963 9.1e-79 297.4 220 69.1
Sopen08g019440 Solanum pennellii HOM05D004975 ORTHO05D005963 1.2e-78 297.0 179 79.3
PGR044G1665 Punica granatum HOM05D004975 ORTHO05D005963 1.6e-78 296.6 192 75.0
Eucgr.H01931 Eucalyptus grandis HOM05D004975 ORTHO05D005963 2.7e-78 295.8 213 67.1
Gohir.D07G065600 Gossypium hirsutum HOM05D004975 ORTHO05D005963 5.9e-78 294.7 215 70.2
Cpa.g.sc6.221 Carica papaya HOM05D004975 ORTHO05D005963 1.0e-77 293.9 222 67.6
Potri.018G006900 Populus trichocarpa HOM05D004975 ORTHO05D005963 1.3e-77 293.5 190 72.1
TWI34G1428 Tripterygium wilfordii HOM05D004975 ORTHO05D005963 1.7e-77 293.1 215 69.3
QL12p025158 Quercus lobata HOM05D004975 ORTHO05D005963 2.9e-77 292.4 189 74.6
Hund22233 Selenicereus undatus HOM05D004975 ORTHO05D005963 2.9e-77 292.4 215 67.9
MELO3C013792.2 Cucumis melo HOM05D004975 ORTHO05D005963 3.8e-77 292.0 224 66.1
Sc24g0001980 Simmondsia chinensis HOM05D004975 ORTHO05D005963 8.5e-77 290.8 217 69.1
TAR625G0147 Trochodendron aralioides HOM05D004975 ORTHO05D005963 3.2e-76 288.9 198 71.2
Duzib168G2230 Durio zibethinus HOM05D004975 ORTHO05D005963 1.2e-75 287.0 219 67.1
EL10Ac2g04836 Beta vulgaris HOM05D004975 ORTHO05D005963 1.6e-75 286.6 215 66.5
Hund06848 Selenicereus undatus HOM05D004975 ORTHO05D005963 2.7e-75 285.8 218 66.5
TWI63G0658 Tripterygium wilfordii HOM05D004975 ORTHO05D005963 2.7e-75 285.8 214 67.8
TAR383G0773 Trochodendron aralioides HOM05D004975 ORTHO05D005963 4.7e-75 285.0 198 70.2
Manes.17G086700 Manihot esculenta HOM05D004975 ORTHO05D005963 6.1e-75 284.6 213 66.2
Lsat_1_v5_gn_1_49060 Lactuca sativa HOM05D004975 ORTHO05D005963 1.0e-74 283.9 192 70.8
GSVIVG01009932001 Vitis vinifera HOM05D004975 ORTHO05D005963 1.8e-74 283.1 222 67.6
TAR383G0873 Trochodendron aralioides HOM05D004975 ORTHO05D005963 4.0e-74 282.0 178 75.3
HanXRQChr01g0029381 Helianthus annuus HOM05D004975 ORTHO05D005963 1.2e-73 280.4 192 69.8
AL7G20600 Arabidopsis lyrata HOM05D004975 ORTHO05D005963 1.5e-73 280.0 208 65.9
HanXRQChr11g0341541 Helianthus annuus HOM05D004975 ORTHO05D005963 3.4e-73 278.9 192 69.3
Aqoxy7G00181 Aquilegia oxysepala HOM05D004975 ORTHO05D005963 3.7e-72 275.4 189 70.4
ECA248G0122 Erigeron canadensis HOM05D004975 ORTHO05D005963 3.7e-72 275.4 215 66.0
Lj3g0015990 Lotus japonicus HOM05D004975 ORTHO05D005963 8.3e-72 274.2 207 65.2
arahy.Tifrunner.gnm1.ann1.1NF0KF Arachis hypogaea HOM05D004975 ORTHO05D005963 1.4e-71 273.5 192 69.8
Ah.06g191340 Amaranthus hybridus HOM05D004975 ORTHO05D005963 1.8e-71 273.1 215 61.9
ECA248G2823 Erigeron canadensis HOM05D004975 ORTHO05D005963 1.8e-71 273.1 216 65.7
Lj3g0002799 Lotus japonicus HOM05D004975 ORTHO05D005963 2.4e-71 272.7 207 65.2
CANSAT25G3538 Cannabis sativa HOM05D004975 ORTHO05D005963 3.1e-71 272.3 192 69.3
Lalb_Chr18g0045061 Lupinus albus HOM05D004975 ORTHO05D005963 3.1e-71 272.3 190 69.5
arahy.Tifrunner.gnm1.ann1.KS8K1P Arachis hypogaea HOM05D004975 ORTHO05D005963 7.0e-71 271.2 192 69.3
Glyma.12G071700 Glycine max HOM05D004975 ORTHO05D005963 7.0e-71 271.2 190 70.5
CANSAT64G0033 Cannabis sativa HOM05D004975 ORTHO05D005963 9.1e-71 270.8 215 65.6
CARHR239350 Cardamine hirsuta HOM05D004975 ORTHO05D005963 2.0e-70 269.6 179 70.4
Phvul.011G072600 Phaseolus vulgaris HOM05D004975 ORTHO05D005963 2.0e-70 269.6 190 71.1
EL10Ac4g08846 Beta vulgaris HOM05D004975 ORTHO05D005963 2.7e-70 269.2 181 72.4
Aa31LG2G18860 Aethionema arabicum HOM05D004975 ORTHO05D005963 3.5e-70 268.9 215 65.6
Glyma.11G153169 Glycine max HOM05D004975 ORTHO05D005963 4.5e-70 268.5 190 68.4
VMungo1127G2243 Vigna mungo HOM05D004975 ORTHO05D005963 5.9e-70 268.1 187 70.6
Psat6g036480 Pisum sativum HOM05D004975 ORTHO05D005963 1.3e-69 266.9 207 64.7
ATR0580G184 Amborella trichopoda HOM05D004975 ORTHO05D005963 2.2e-69 266.2 211 64.5
arahy.Tifrunner.gnm1.ann1.GL41SS Arachis hypogaea HOM05D004975 ORTHO05D005963 2.9e-69 265.8 192 68.2
AT4G31460 Arabidopsis thaliana HOM05D004975 ORTHO05D005963 3.8e-69 265.4 175 72.6
MBI16_g41808_MAGBIO Magnolia biondii HOM05D004975 ORTHO05D005963 3.8e-69 265.4 209 63.2
TPR.G24523 Trifolium pratense HOM05D004975 ORTHO05D005963 1.1e-68 263.8 206 64.1
Medtr1g007480 Medicago truncatula HOM05D004975 ORTHO05D005963 1.5e-68 263.5 206 62.6
Rhsim04G0150100 Rhododendron simsii HOM05D004975 ORTHO05D005963 9.4e-68 260.8 207 64.3
A01p06810 Brassica napus HOM05D004975 ORTHO05D005963 2.1e-67 259.6 170 72.9
BraA01t00633Z Brassica rapa HOM05D004975 ORTHO05D005963 2.1e-67 259.6 170 72.9
BraA08t33823Z Brassica rapa HOM05D004975 ORTHO05D005963 2.7e-67 259.2 170 72.4
BcaB03g12697 Brassica carinata HOM05D004975 ORTHO05D005963 3.6e-67 258.8 170 72.4
BcaNung04586 Brassica carinata HOM05D004975 ORTHO05D005963 3.6e-67 258.8 169 72.8
C01p07550 Brassica napus HOM05D004975 ORTHO05D005963 4.7e-67 258.5 170 72.4
BolC1t00736H Brassica oleracea HOM05D004975 ORTHO05D005963 4.7e-67 258.5 170 72.4
Thhalv10026230m.g Eutrema salsugineum HOM05D004975 ORTHO05D005963 4.7e-67 258.5 215 62.3
A08p18600 Brassica napus HOM05D004975 ORTHO05D005963 8.0e-67 257.7 169 72.2
Sabra18G0014600 Salix brachista HOM05D004975 ORTHO05D005963 8.0e-67 257.7 299 47.5
BcaC09g51928 Brassica carinata HOM05D004975 ORTHO05D005963 1.0e-66 257.3 170 71.8
Sp7g29320 Schrenkiella parvula HOM05D004975 ORTHO05D005963 1.4e-66 256.9 170 71.8
FvH4_2g36661 Fragaria vesca HOM05D004975 ORTHO05D005963 2.3e-66 256.1 228 60.5
CDE05G0021 Ceratophyllum demersum HOM05D004975 ORTHO05D005963 4.0e-66 255.4 190 66.3
Carub.0007s0909 Capsella rubella HOM05D004975 ORTHO05D005963 5.2e-66 255.0 215 60.5
BcaC01g01087 Brassica carinata HOM05D004975 ORTHO05D005963 6.8e-66 254.6 170 71.8
C03p87960 Brassica napus HOM05D004975 ORTHO05D005963 6.8e-66 254.6 170 71.8
BolC3t21107H Brassica oleracea HOM05D004975 ORTHO05D005963 6.8e-66 254.6 170 71.8
RcHm_v2.0_Chr6g0305011 Rosa chinensis HOM05D004975 ORTHO05D005963 6.8e-66 254.6 228 60.1
FAN20G1154 Fragaria x ananassa HOM05D007251 ORTHO05D009266 8.8e-66 254.2 228 59.2
Ca_12771_v3 Cicer arietinum L. HOM05D004975 ORTHO05D005963 3.4e-65 252.3 204 61.3
CDE02G4585 Ceratophyllum demersum HOM05D004975 ORTHO05D005963 4.4e-65 251.9 174 69.0
Os07g0544900 Oryza sativa ssp. japonica HOM05D004975 ORTHO05D005963 9.8e-65 250.8 177 67.8
Zm00001eb323470 Zea mays HOM05D004975 ORTHO05D005963 1.3e-64 250.4 214 59.8
SHI04272 Sapria himalayana HOM05D004975 ORTHO05D005963 2.4e-63 246.1 199 61.8
arahy.Tifrunner.gnm1.ann1.57HDZK Arachis hypogaea HOM05D004975 ORTHO05D005963 4.1e-63 245.4 192 65.1
Zm00001eb106440 Zea mays HOM05D004975 ORTHO05D005963 2.7e-62 242.7 177 66.7
HPP92_011116 Vanilla planifolia HOM05D004975 ORTHO05D005963 2.9e-61 239.2 199 60.8
Haze_21744 Corylus avellana HOM05D004975 ORTHO05D005963 6.8e-58 228.0 286 45.8
MD08G1128100 Malus domestica HOM05D004975 ORTHO05D005963 1.2e-57 227.3 240 51.7
MD15G1107600 Malus domestica HOM05D004975 ORTHO05D005963 1.2e-57 227.3 240 52.1
Prupe.1G459900 Prunus persica HOM05D004975 ORTHO05D005963 1.7e-56 223.4 241 51.0
PSO063G2087 Papaver somniferum HOM05D004975 ORTHO05D005963 2.4e-55 219.5 218 55.0
PSO063G4606 Papaver somniferum HOM05D004975 ORTHO05D005963 9.2e-55 217.6 214 56.1
FAN06G0478 Fragaria x ananassa HOM05D004975 ORTHO05D005963 1.2e-54 217.2 192 60.9
PSO170G1562 Papaver somniferum HOM05D004975 ORTHO05D005963 1.2e-54 217.2 218 54.6
FvH4_7g03740 Fragaria vesca HOM05D004975 ORTHO05D005963 5.0e-53 211.8 135 73.3
SEGI_29047 Sequoiadendron giganteum HOM05D004975 ORTHO05D005963 2.3e-50 203.0 170 57.1
Lj7C709T7 Lonicera japonica HOM05D004975 ORTHO05D005963 3.1e-50 202.6 155 67.1
CAN.G886.9 Capsicum annuum HOM05D004975 ORTHO05D005963 1.2e-49 200.7 150 67.3
AUR62027460 Chenopodium quinoa HOM05D004975 ORTHO05D005963 4.4e-49 198.7 151 66.9
Manes.15G137600 Manihot esculenta HOM05D004975 ORTHO05D005963 4.4e-49 198.7 213 49.3
PSO782G1312 Papaver somniferum HOM05D004975 ORTHO05D005963 1.7e-48 196.8 141 66.7
Oeu031567.1 Olea europaea HOM05D004975 ORTHO05D005963 1.9e-47 193.4 152 65.8
Nn2g12690 Nelumbo nucifera HOM05D004975 ORTHO05D005963 5.4e-47 191.8 121 75.2
vmacro05353 Vaccinium macrocarpon HOM05D004975 ORTHO05D005963 1.2e-41 174.1 135 63.7
Ca_29761_v3 Cicer arietinum L. HOM05D004975 ORTHO05D005963 4.9e-40 168.7 141 59.6
HPP92_011121 Vanilla planifolia HOM05D004975 ORTHO05D005963 3.2e-39 166.0 145 58.6
Cfa013273 Carpinus fangiana HOM05D004975 ORTHO05D005963 5.4e-39 165.2 107 72.0
Solyc10g038060.2 Solanum lycopersicum HOM05D004975 ORTHO05D005963 1.0e-37 161.0 175 52.6
Pp3c2_35700 Physcomitrium patens HOM05D004975 ORTHO05D005963 5.1e-37 158.7 111 66.7
SMO367G1088 Selaginella moellendorffii HOM05D004975 ORTHO05D005963 1.8e-34 150.2 113 61.1
Mapoly0026s0002 Marchantia polymorpha HOM05D004975 ORTHO05D005963 3.1e-34 149.4 124 56.5
AagrBONN_evm.TU.Sc2ySwM_117.1642 Anthoceros agrestis HOM05D004975 ORTHO05D005963 2.0e-33 146.7 131 53.4
BcaC01g01097 Brassica carinata HOM05D004975 ORTHO05D005963 6.4e-32 141.7 94 72.3
C03p88060 Brassica napus HOM05D004975 ORTHO05D005963 1.1e-31 141.0 92 72.8
BcaNung01521 Brassica carinata HOM05D004975 ORTHO05D005963 4.7e-27 125.6 115 56.5
BcaNung04139 Brassica carinata HOM05D004975 ORTHO05D005963 4.7e-27 125.6 115 56.5
Aqoxy3G03669 Aquilegia oxysepala HOM05D004975 ORTHO05D005963 1.2e-22 110.9 62 80.6
Oeu033208.1 Olea europaea HOM05D004975 ORTHO05D005963 1.1e-20 104.4 100 59.0
AUR62027459 Chenopodium quinoa HOM05D004975 ORTHO05D005963 4.0e-18 95.9 67 68.7
BcaB03g12699 Brassica carinata HOM05D004975 ORTHO05D005963 1.5e-17 94.0 90 50.0
PRCOL_00000323 Prasinoderma coloniale HOM05D004975 ORTHO05D005963 3.4e-17 92.8 76 59.2
Sopen10g011390 Solanum pennellii HOM05D004975 ORTHO05D005963 3.4e-17 92.8 59 74.6
Cfa025056 Carpinus fangiana HOM05D004975 ORTHO05D005963 2.5e-12 76.6 73 52.1
CBR_g8145 Chara braunii HOM05D004975 ORTHO05D005963 9.6e-12 74.7 54 61.1
CiPaw.07G212300 Carya illinoinensis HOM05D004975 ORTHO05D005963 6.9e-10 68.6 48 68.8
AagrBONN_evm.TU.Sc2ySwM_368.1480 Anthoceros agrestis HOM05D001654 ORTHO05D002773 7.6e-09 65.1 46 60.9


User provided reference genes

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