Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.A00225 Erythranthe guttata HOM05D004081 ORTHO05D004935 3.2e-248 861.3 431 100.0
MSTRG.11708 Avicennia marina HOM05D004081 ORTHO05D004935 3.2e-184 648.7 406 76.1
Actinidia31231 Actinidia chinensis HOM05D004081 ORTHO05D004935 2.9e-169 599.0 412 70.9
SalBow4G2011 Salvia bowleyana HOM05D004081 ORTHO05D004935 3.8e-169 598.6 427 69.8
SGA_v2.0_scaffold243G44290 Striga asiatica HOM05D004081 ORTHO05D004935 3.8e-169 598.6 418 71.1
Oeu011271.1 Olea europaea HOM05D004081 ORTHO05D004935 4.7e-167 591.7 384 74.2
PGSC0003DMG400005495 Solanum tuberosum HOM05D004081 ORTHO05D004935 6.8e-166 587.8 355 77.5
Nitab4.5_0001499g0090 Nicotiana tabacum HOM05D004081 ORTHO05D004935 8.8e-166 587.4 377 74.0
Peaxi162Scf00090g00194 Petunia axillaris HOM05D004081 ORTHO05D004935 2.0e-165 586.3 363 76.3
Sopen08g022280 Solanum pennellii HOM05D004081 ORTHO05D004935 1.3e-164 583.6 355 76.6
Cc08_g09170 Coffea canephora HOM05D004081 ORTHO05D004935 2.2e-164 582.8 348 78.4
Potri.006G240600 Populus trichocarpa HOM05D004081 ORTHO05D004935 6.3e-164 581.3 350 78.9
Prupe.1G451100 Prunus persica HOM05D004081 ORTHO05D004935 6.3e-164 581.3 405 68.9
Sc23g0006000 Simmondsia chinensis HOM05D004081 ORTHO05D004935 1.1e-163 580.5 391 70.3
Solyc08g068400.4 Solanum lycopersicum HOM05D004081 ORTHO05D004935 1.8e-163 579.7 355 76.1
Nn3g18089 Nelumbo nucifera HOM05D004081 ORTHO05D004935 4.1e-163 578.6 355 76.6
Nitab4.5_0002411g0020 Nicotiana tabacum HOM05D004081 ORTHO05D004935 5.4e-163 578.2 349 77.1
GSVIVG01035653001 Vitis vinifera HOM05D004081 ORTHO05D004935 1.2e-162 577.0 350 77.7
CSS0039336 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 5.0e-161 571.6 350 75.4
TAR383G0460 Trochodendron aralioides HOM05D004081 ORTHO05D004935 5.0e-161 571.6 350 76.6
Gohir.D06G094000 Gossypium hirsutum HOM05D004081 ORTHO05D004935 8.6e-161 570.9 349 76.5
Gorai.010G108500 Gossypium raimondii HOM05D004081 ORTHO05D004935 1.9e-160 569.7 349 76.5
Sabra06G0188200 Salix brachista HOM05D004081 ORTHO05D004935 1.9e-160 569.7 358 76.5
vmacro11071 Vaccinium macrocarpon HOM05D004081 ORTHO05D004935 1.9e-160 569.7 366 73.8
MD08G1116700 Malus domestica HOM05D004081 ORTHO05D004935 3.3e-160 568.9 405 69.1
Thecc.09G041800 Theobroma cacao HOM05D004081 ORTHO05D004935 1.6e-159 566.6 422 66.6
Solyc05g041530.3 Solanum lycopersicum HOM05D004081 ORTHO05D004935 3.6e-159 565.5 350 75.1
Sopen05g025590 Solanum pennellii HOM05D004081 ORTHO05D004935 3.6e-159 565.5 350 75.4
COL.COLO4_18679 Corchorus olitorius HOM05D004081 ORTHO05D004935 8.0e-159 564.3 347 76.7
Gorai.010G108400 Gossypium raimondii HOM05D004081 ORTHO05D004935 1.0e-158 563.9 422 66.1
Gohir.D06G093900 Gossypium hirsutum HOM05D004081 ORTHO05D004935 1.4e-158 563.5 422 66.1
CSS0025305 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 3.0e-158 562.4 363 73.8
Eucgr.E03517 Eucalyptus grandis HOM05D004081 ORTHO05D004935 5.2e-158 561.6 359 74.9
Manes.03G062100 Manihot esculenta HOM05D004081 ORTHO05D004935 2.6e-157 559.3 374 72.7
RcHm_v2.0_Chr6g0305921 Rosa chinensis HOM05D004081 ORTHO05D004935 4.4e-157 558.5 413 66.8
Aqoxy7G01585 Aquilegia oxysepala HOM05D004081 ORTHO05D004935 7.5e-157 557.8 378 73.3
Duzib150G1044 Durio zibethinus HOM05D004081 ORTHO05D004935 1.3e-156 557.0 405 67.7
ECA236G4667 Erigeron canadensis HOM05D004081 ORTHO05D004935 1.3e-156 557.0 355 74.1
Duzib168G0078 Durio zibethinus HOM05D004081 ORTHO05D004935 4.9e-156 555.1 350 75.1
FAN27G0952 Fragaria x ananassa HOM05D004081 ORTHO05D004935 6.3e-156 554.7 362 72.1
HanXRQChr16g0510231 Helianthus annuus HOM05D004081 ORTHO05D004935 8.3e-156 554.3 351 75.2
PGSC0003DMG400020762 Solanum tuberosum HOM05D004081 ORTHO05D004935 1.8e-155 553.1 385 69.6
FvH4_2g35900 Fragaria vesca HOM05D004081 ORTHO05D004935 3.1e-155 552.4 411 66.7
PGR004G0014 Punica granatum HOM05D004081 ORTHO05D004935 4.1e-155 552.0 354 74.3
QL12p029513 Quercus lobata HOM05D004081 ORTHO05D004935 4.1e-155 552.0 404 66.8
Sc06g0000750 Simmondsia chinensis HOM05D004081 ORTHO05D004935 7.0e-155 551.2 349 72.5
FAN20G0986 Fragaria x ananassa HOM05D004081 ORTHO05D004935 3.5e-154 548.9 406 66.5
TWI34G1344 Tripterygium wilfordii HOM05D004081 ORTHO05D004935 4.5e-154 548.5 406 66.7
EL10Ac2g04053 Beta vulgaris HOM05D004081 ORTHO05D004935 1.0e-153 547.4 376 70.5
Ah.10g035110 Amaranthus hybridus HOM05D004081 ORTHO05D004935 3.9e-153 545.4 383 71.0
Duzib168G2093 Durio zibethinus HOM05D004081 ORTHO05D004935 2.1e-151 539.7 355 73.5
Manes.16G071800 Manihot esculenta HOM05D004081 ORTHO05D004935 1.8e-150 536.6 423 64.1
Haze_21871 Corylus avellana HOM05D004081 ORTHO05D004935 2.3e-150 536.2 355 72.7
unitig_748.g7994 Utricularia gibba HOM05D004081 ORTHO05D004935 4.0e-150 535.4 358 71.5
Gohir.A06G094300 Gossypium hirsutum HOM05D004081 ORTHO05D004935 1.2e-149 533.9 420 65.0
PSO566G0156 Papaver somniferum HOM05D004081 ORTHO05D004935 2.6e-149 532.7 358 72.6
Cfa013350 Carpinus fangiana HOM05D004081 ORTHO05D004935 1.7e-148 530.0 356 71.9
PSO782G5115 Papaver somniferum HOM05D004081 ORTHO05D004935 2.2e-148 529.6 358 71.8
Sed0008402 Sechium edule HOM05D004081 ORTHO05D004935 2.2e-148 529.6 349 70.2
TPR.G1357 Trifolium pratense HOM05D004081 ORTHO05D004935 2.2e-148 529.6 423 62.4
MELO3C003456.2 Cucumis melo HOM05D004081 ORTHO05D004935 4.9e-148 528.5 358 68.7
Hund03409 Selenicereus undatus HOM05D004081 ORTHO05D004935 4.9e-148 528.5 456 59.9
Thecc.09G041700 Theobroma cacao HOM05D004081 ORTHO05D004935 8.3e-148 527.7 351 71.2
Ca_15610_v3 Cicer arietinum L. HOM05D004081 ORTHO05D004935 1.1e-147 527.3 437 61.6
Lsat_1_v5_gn_8_105500 Lactuca sativa HOM05D004081 ORTHO05D004935 3.5e-146 522.3 348 71.8
CsaV3_3G048650 Cucumis sativus L. HOM05D004081 ORTHO05D004935 7.8e-146 521.2 358 67.6
Rhsim02G0180500 Rhododendron simsii HOM05D004081 ORTHO05D004935 1.7e-145 520.0 322 75.8
CAN.G21.43 Capsicum annuum HOM05D004081 ORTHO05D004935 2.3e-145 519.6 303 78.5
AUR62029665 Chenopodium quinoa HOM05D004081 ORTHO05D004935 3.9e-145 518.8 358 70.1
Glyma.04G081400 Glycine max HOM05D004081 ORTHO05D004935 7.3e-144 514.6 356 68.5
arahy.Tifrunner.gnm1.ann1.QHLN3W Arachis hypogaea HOM05D004081 ORTHO05D004935 2.1e-143 513.1 376 65.7
CiPaw.07G206000 Carya illinoinensis HOM05D004081 ORTHO05D004935 2.1e-143 513.1 305 78.0
AUR62009311 Chenopodium quinoa HOM05D004081 ORTHO05D004935 2.1e-143 513.1 352 70.7
CSS0003690 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.3e-142 509.6 303 76.6
Glyma.06G083100 Glycine max HOM05D004081 ORTHO05D004935 2.3e-142 509.6 356 68.3
ClCG11G015230 Citrullus lanatus HOM05D004081 ORTHO05D004935 6.8e-142 508.1 438 58.9
Lj1g0015510 Lotus japonicus HOM05D004081 ORTHO05D004935 7.5e-141 504.6 394 62.7
VMungo1309G1316 Vigna mungo HOM05D004081 ORTHO05D004935 7.5e-141 504.6 356 69.4
Os06g0163200 Oryza sativa ssp. japonica HOM05D004081 ORTHO05D004935 1.7e-140 503.4 346 68.8
AUR62041725 Chenopodium quinoa HOM05D004081 ORTHO05D004935 2.2e-140 503.1 334 72.2
BcaC04g23588 Brassica carinata HOM05D004081 ORTHO05D004935 4.9e-140 501.9 363 64.7
Phvul.009G106100 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 4.9e-140 501.9 356 68.0
arahy.Tifrunner.gnm1.ann1.Y1FCW9 Arachis hypogaea HOM05D004081 ORTHO05D004935 8.3e-140 501.1 392 62.8
Glyma.06G083200 Glycine max HOM05D004081 ORTHO05D004935 3.2e-139 499.2 357 66.4
BolC9t53593H Brassica oleracea HOM05D004081 ORTHO05D004935 4.1e-139 498.8 353 66.3
Psat5g023440 Pisum sativum HOM05D004081 ORTHO05D004935 2.7e-138 496.1 400 62.8
Aa31LG11G4780 Aethionema arabicum HOM05D004081 ORTHO05D004935 3.5e-138 495.7 364 67.0
BolC2t11999H Brassica oleracea HOM05D004081 ORTHO05D004935 1.0e-137 494.2 352 65.3
Lj7A705T29 Lonicera japonica HOM05D004081 ORTHO05D004935 1.3e-137 493.8 316 75.9
BcaB07g29982 Brassica carinata HOM05D004081 ORTHO05D004935 1.7e-137 493.4 356 65.2
Thhalv10004493m.g Eutrema salsugineum HOM05D004081 ORTHO05D004935 2.3e-137 493.0 351 65.2
BcaC03g17893 Brassica carinata HOM05D004081 ORTHO05D004935 1.5e-136 490.3 352 65.1
Hma1.2p1_2102F.1_g314030 Hydrangea macrophylla HOM05D004081 ORTHO05D004935 1.5e-136 490.3 278 82.7
Carub.0006s2355 Capsella rubella HOM05D004081 ORTHO05D004935 1.9e-136 490.0 354 64.4
BcaB04g19768 Brassica carinata HOM05D004081 ORTHO05D004935 4.7e-135 485.3 352 63.6
CSS0038651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 3.1e-134 482.6 303 73.3
AL6G37640 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 4.0e-134 482.3 345 64.9
CARHR187640 Cardamine hirsuta HOM05D004081 ORTHO05D004935 1.2e-133 480.7 347 64.8
THA.LOC104815055 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 9.9e-133 477.6 349 63.6
MBI01_g30745_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 3.7e-132 475.7 312 72.4
Sp2g21850 Schrenkiella parvula HOM05D004081 ORTHO05D004935 8.3e-132 474.6 352 62.5
AT5G25770 Arabidopsis thaliana HOM05D004081 ORTHO05D004935 1.4e-131 473.8 346 63.6
Psat5g023320 Pisum sativum HOM05D004081 ORTHO05D004935 3.2e-131 472.6 305 71.8
Aa31LG11G4770 Aethionema arabicum HOM05D004081 ORTHO05D004935 5.4e-131 471.9 365 63.6
CSS0042840 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 4.6e-130 468.8 335 67.8
Lalb_Chr08g0243191 Lupinus albus HOM05D004081 ORTHO05D004935 3.9e-129 465.7 400 59.8
Lsat_1_v5_gn_8_134220 Lactuca sativa HOM05D004081 ORTHO05D004935 5.6e-128 461.8 325 68.0
BolC2t12002H Brassica oleracea HOM05D004081 ORTHO05D004935 7.3e-128 461.5 330 65.2
Lsat_1_v5_gn_8_104541 Lactuca sativa HOM05D004081 ORTHO05D004935 1.8e-126 456.8 325 67.1
THA.LOC104799704 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 2.0e-125 453.4 349 62.8
Ciclev10009208m.g Citrus clementina HOM05D004081 ORTHO05D004935 2.9e-124 449.5 263 77.6
Rhsim02G0180200 Rhododendron simsii HOM05D001113 ORTHO05D000968 8.4e-124 448.0 329 65.7
Glyma.06G083000 Glycine max HOM05D004081 ORTHO05D004935 1.9e-123 446.8 327 65.1
Lsat_1_v5_gn_8_104800 Lactuca sativa HOM05D004081 ORTHO05D004935 3.1e-118 429.5 330 62.7
BcaC04g23590 Brassica carinata HOM05D004081 ORTHO05D004935 3.0e-113 412.9 358 57.5
CAN.G21.42 Capsicum annuum HOM05D004081 ORTHO05D004935 9.6e-112 407.9 246 76.8
DCAR_004492 Daucus carota HOM05D004081 ORTHO05D004935 3.6e-111 406.0 243 77.8
Duzib168G0602 Durio zibethinus HOM05D004081 ORTHO05D004935 1.8e-110 403.7 333 62.2
Gohir.A06G094400 Gossypium hirsutum HOM05D004081 ORTHO05D004935 9.9e-109 397.9 378 54.5
BcaC03g17895 Brassica carinata HOM05D004081 ORTHO05D004935 1.7e-108 397.1 477 44.7
Actinidia13318 Actinidia chinensis HOM05D004081 ORTHO05D004935 2.7e-106 389.8 221 80.5
A09p06100 Brassica napus HOM05D004081 ORTHO05D004935 3.5e-106 389.4 250 68.8
CANSAT25G3157 Cannabis sativa HOM05D004081 ORTHO05D004935 3.9e-105 386.0 263 72.2
Phvul.009G105800 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 9.6e-104 381.3 385 50.6
FAN15G1869 Fragaria x ananassa HOM05D004081 ORTHO05D004935 1.1e-102 377.9 311 61.1
Cpa.g.sc7.252 Carica papaya HOM05D004081 ORTHO05D004935 5.3e-102 375.6 244 72.1
VMungo0768G0001 Vigna mungo HOM05D004081 ORTHO05D004935 1.3e-100 370.9 381 51.7
Lsat_1_v5_gn_8_104461 Lactuca sativa HOM05D004081 ORTHO05D004935 9.3e-99 364.8 385 52.5
Dinv30265 Davidia involucrata HOM05D004081 ORTHO05D004935 6.0e-98 362.1 271 66.1
SHI18658 Sapria himalayana HOM05D004081 ORTHO05D004935 2.3e-97 360.1 349 52.7
BolC2t12001H Brassica oleracea HOM05D004081 ORTHO05D004935 6.7e-97 358.6 290 60.0
Phvul.009G107301 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 1.1e-94 351.3 407 46.7
CAN.G21.41 Capsicum annuum HOM05D004081 ORTHO05D004935 1.1e-91 341.3 210 73.3
HPP92_021511 Vanilla planifolia HOM05D004081 ORTHO05D004935 4.2e-91 339.3 299 59.2
Zm00001eb271420 Zea mays HOM05D004081 ORTHO05D004935 6.1e-90 335.5 243 65.0
Mapoly0161s0002 Marchantia polymorpha HOM05D004081 ORTHO05D004935 7.9e-90 335.1 299 53.2
AagrBONN_evm.TU.Sc2ySwM_228.1948 Anthoceros agrestis HOM05D004081 ORTHO05D004935 3.9e-89 332.8 360 47.5
CAN.G21.44 Capsicum annuum HOM05D004081 ORTHO05D004935 8.2e-87 325.1 287 57.8
Eucgr.L00922 Eucalyptus grandis HOM05D004081 ORTHO05D004935 3.9e-81 306.2 258 62.0
CSS0013583 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 8.8e-81 305.1 194 74.2
ATR0315G111 Amborella trichopoda HOM05D004081 ORTHO05D004935 2.8e-79 300.1 229 62.9
Glyma.04G081600 Glycine max HOM05D004081 ORTHO05D004935 6.3e-79 298.9 196 68.4
ATR0121G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 2.0e-77 293.9 302 51.0
SMO089G0019 Selaginella moellendorffii HOM05D004081 ORTHO05D004935 1.3e-76 291.2 280 48.9
CSS0028651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 3.6e-74 283.1 194 71.1
Lsat_1_v5_gn_8_104201 Lactuca sativa HOM05D004081 ORTHO05D004935 3.6e-74 283.1 335 48.7
THA.LOC104809696 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 3.6e-66 256.5 194 64.9
Atru.chr7.2143 Acer truncatum HOM05D004081 ORTHO05D004935 1.6e-61 241.1 134 82.8
SEGI_32132 Sequoiadendron giganteum HOM05D004081 ORTHO05D004935 1.7e-55 221.1 159 67.3
Nitab4.5_0000513g0070 Nicotiana tabacum HOM05D004081 ORTHO05D004935 1.6e-50 204.5 334 40.4
Hund03408 Selenicereus undatus HOM05D004081 ORTHO05D004935 2.3e-49 200.7 126 74.6
Atru.chr7.2142 Acer truncatum HOM05D004081 ORTHO05D004935 3.1e-46 190.3 116 79.3
Medtr3g110115 Medicago truncatula HOM05D004081 ORTHO05D004935 2.0e-45 187.6 255 45.9
MCO09G062 Micromonas commoda HOM05D004081 ORTHO05D004935 1.7e-44 184.5 347 31.1
Lsat_1_v5_gn_0_34401 Lactuca sativa HOM05D004081 ORTHO05D004935 1.5e-43 181.4 207 49.8
Cre16.g676500 Chlamydomonas reinhardtii HOM05D004081 ORTHO05D004935 5.2e-41 172.9 223 40.8
PRCOL_00003400 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 2.7e-37 160.6 303 31.0
AL6G37600 Arabidopsis lyrata HOM05D004081 ORTHO05D004935 2.5e-35 154.1 156 46.8
Oeu014640.1 Olea europaea HOM05D004081 ORTHO05D025646 4.7e-34 149.8 138 63.0
BcaB05g25303 Brassica carinata HOM05D004081 ORTHO05D004935 1.4e-33 148.3 89 70.8
PRCOL_00002146 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 7.3e-27 125.9 219 33.8
Zm00001eb357480 Zea mays HOM05D002669 ORTHO05D004935 3.3e-19 100.5 69 66.7
Zm00001eb288810 Zea mays HOM05D002669 ORTHO05D004935 7.3e-19 99.4 69 66.7
Ciclev10010051m.g Citrus clementina HOM05D004081 ORTHO05D004935 1.2e-16 92.0 73 61.6
HPP92_021483 Vanilla planifolia HOM05D004081 ORTHO05D004935 1.7e-15 88.2 70 58.6
Cpa.g.sc7.250 Carica papaya HOM05D002779 ORTHO05D003074 1.2e-13 82.0 49 75.5
ATR0241G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 1.6e-13 81.6 67 53.7
PGSC0003DMG400019844 Solanum tuberosum HOM05D004081 ORTHO05D004935 8.9e-09 65.9 168 30.4
MBI14_g24972_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 7.6e-08 62.8 55 50.9
ATR0121G013 Amborella trichopoda HOM05D004081 ORTHO05D004935 1.3e-07 62.0 77 46.8
MD15G1096200 Malus domestica HOM05D004081 ORTHO05D025646 2.2e-07 61.2 47 61.7
Hund03407 Selenicereus undatus HOM05D004081 ORTHO05D025646 2.2e-07 61.2 49 57.1
MBI16_g01586_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 2.9e-07 60.8 55 50.9
MBI18_g30531_MAGBIO Magnolia biondii HOM05D001007 ORTHO05D036465 9.3e-06 55.8 33 72.7


User provided reference genes

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