Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.A00170 Erythranthe guttata HOM05D006132 ORTHO05D007305 0.0e+00 3863.9 1958 100.0
MSTRG.25925 Avicennia marina HOM05D006132 ORTHO05D007305 0.0e+00 2968.7 1964 78.5
SalBow4G1475 Salvia bowleyana HOM05D006132 ORTHO05D007305 0.0e+00 2724.9 1972 72.2
SGA_v2.0_scaffold103G30057 Striga asiatica HOM05D006132 ORTHO05D007305 0.0e+00 2613.6 1974 70.7
Dinv23402 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 2448.3 1951 65.5
Oeu038827.1 Olea europaea HOM05D006132 ORTHO05D007305 0.0e+00 2392.8 1954 65.3
Cc08_g10020 Coffea canephora HOM05D006132 ORTHO05D007305 0.0e+00 2384.0 1980 64.1
Lj8C561G12 Lonicera japonica HOM05D006132 ORTHO05D007305 0.0e+00 2339.3 1893 64.0
Dinv02537 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 2322.4 1879 64.8
Sopen08g019670 Solanum pennellii HOM05D006132 ORTHO05D007305 0.0e+00 2257.6 1961 61.8
vmacro00180 Vaccinium macrocarpon HOM05D006132 ORTHO05D007305 0.0e+00 2246.5 2046 59.4
CAN.G9.6 Capsicum annuum HOM05D006132 ORTHO05D007305 0.0e+00 2231.8 1986 60.7
GSVIVG01035326001 Vitis vinifera HOM05D006132 ORTHO05D007305 0.0e+00 2230.3 1991 60.2
Haze_01967 Corylus avellana HOM05D006132 ORTHO05D007305 0.0e+00 2217.6 1996 59.8
QL12p040855 Quercus lobata HOM05D006132 ORTHO05D007305 0.0e+00 2210.3 1984 59.4
CiPaw.07G201400 Carya illinoinensis HOM05D006132 ORTHO05D007305 0.0e+00 2206.0 1987 59.4
TAR636G1718 Trochodendron aralioides HOM05D006132 ORTHO05D007305 0.0e+00 2188.7 2072 57.7
Ciclev10010526m.g Citrus clementina HOM05D006132 ORTHO05D007305 0.0e+00 2184.5 1962 59.2
Prupe.1G443500 Prunus persica HOM05D006132 ORTHO05D007305 0.0e+00 2179.1 1913 60.4
Atru.chr7.2044 Acer truncatum HOM05D006132 ORTHO05D007305 0.0e+00 2175.2 1992 57.6
Nn8g39007 Nelumbo nucifera HOM05D006132 ORTHO05D007305 0.0e+00 2156.3 2043 56.9
Thecc.09G049200 Theobroma cacao HOM05D006132 ORTHO05D007305 0.0e+00 2154.0 1985 58.0
MD08G1108900 Malus domestica HOM05D006132 ORTHO05D007305 0.0e+00 2151.7 1920 59.5
Potri.018G057900 Populus trichocarpa HOM05D006132 ORTHO05D007305 0.0e+00 2150.2 1991 58.5
Manes.03G057600 Manihot esculenta HOM05D006132 ORTHO05D007305 0.0e+00 2149.8 1984 58.4
RcHm_v2.0_Chr6g0306811 Rosa chinensis HOM05D006132 ORTHO05D007305 0.0e+00 2124.4 1915 59.0
TWI34G0160 Tripterygium wilfordii HOM05D006132 ORTHO05D007305 0.0e+00 2124.4 1922 59.6
COL.COLO4_21010 Corchorus olitorius HOM05D006132 ORTHO05D007305 0.0e+00 2122.8 1996 57.6
FvH4_2g35140 Fragaria vesca HOM05D006132 ORTHO05D007305 0.0e+00 2120.9 1972 57.7
Nitab4.5_0000318g0080 Nicotiana tabacum HOM05D006132 ORTHO05D007305 0.0e+00 2109.3 1923 60.1
Gorai.001G024600 Gossypium raimondii HOM05D006132 ORTHO05D007305 0.0e+00 2097.4 1910 58.1
Ca_15565_v3 Cicer arietinum L. HOM05D006132 ORTHO05D007305 0.0e+00 2083.5 1946 57.3
DCAR_007699 Daucus carota HOM05D006132 ORTHO05D007305 0.0e+00 2073.1 1943 58.0
Sed0028022 Sechium edule HOM05D006132 ORTHO05D007305 0.0e+00 2072.4 1957 57.1
Duzib168G1248 Durio zibethinus HOM05D006132 ORTHO05D007305 0.0e+00 2069.7 1995 55.7
Medtr3g110417 Medicago truncatula HOM05D006132 ORTHO05D007305 0.0e+00 2068.5 1948 56.9
Lj1g0008631 Lotus japonicus HOM05D006132 ORTHO05D007305 0.0e+00 2068.1 1988 56.3
Glyma.06G088900 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 2060.8 1927 57.3
Lalb_Chr08g0242871 Lupinus albus HOM05D006132 ORTHO05D007305 0.0e+00 2058.9 1913 57.2
MELO3C003478.2 Cucumis melo HOM05D006132 ORTHO05D007305 0.0e+00 2054.3 1955 56.8
Glyma.04G087200 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 2047.7 1989 55.8
ECA240G1625 Erigeron canadensis HOM05D006132 ORTHO05D007305 0.0e+00 2041.9 1950 56.8
Psat0s3156g0040 Pisum sativum HOM05D006132 ORTHO05D007305 0.0e+00 2036.9 1985 56.0
CsaV3_3G048410 Cucumis sativus L. HOM05D006132 ORTHO05D007305 0.0e+00 2035.8 1988 55.8
HanXRQChr03g0077991 Helianthus annuus HOM05D006132 ORTHO05D007305 0.0e+00 2034.2 1996 56.5
VMungo1309G3161 Vigna mungo HOM05D006132 ORTHO05D007305 0.0e+00 2025.8 1919 56.5
MBI01_g01249_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 0.0e+00 2023.4 2038 55.1
Lsat_1_v5_gn_3_109020 Lactuca sativa HOM05D006132 ORTHO05D007305 0.0e+00 2018.8 1953 56.5
PSO210G7354 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 2014.2 2049 55.0
Gohir.D07G023900 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 2013.4 1900 57.1
TPR.G12374 Trifolium pratense HOM05D006132 ORTHO05D007305 0.0e+00 2012.3 1919 57.1
Sc09g0009530 Simmondsia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 2011.9 1918 56.2
PGR031G1631 Punica granatum HOM05D006132 ORTHO05D007305 0.0e+00 1993.8 1943 56.0
ClCG11G015000 Citrullus lanatus HOM05D006132 ORTHO05D007305 0.0e+00 1992.6 2020 54.8
Phvul.009G112700 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 1991.9 1910 55.9
AUR62040212 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 1986.5 1987 54.6
Aqoxy7G03955 Aquilegia oxysepala HOM05D006132 ORTHO05D007305 0.0e+00 1981.5 2058 53.4
PSO210G2191 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 1981.5 2046 53.8
Rhsim11G0049000 Rhododendron simsii HOM05D006132 ORTHO05D007305 0.0e+00 1980.3 1945 56.8
arahy.Tifrunner.gnm1.ann1.GM174E Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 1973.0 2123 52.8
AUR62009214 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 1964.9 1998 54.3
Ah.11g044450 Amaranthus hybridus HOM05D006132 ORTHO05D007305 0.0e+00 1927.1 1983 53.4
arahy.Tifrunner.gnm1.ann1.XPLI6K Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 1912.9 1892 55.4
THA.LOC104818581 Tarenaya hassleriana HOM05D006132 ORTHO05D007305 0.0e+00 1906.3 1954 53.7
EL10Ac2g03960 Beta vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 1887.1 2129 50.4
Sp7g30590 Schrenkiella parvula HOM05D006132 ORTHO05D007305 0.0e+00 1883.2 1886 53.8
Carub.0007s0767 Capsella rubella HOM05D006132 ORTHO05D007305 0.0e+00 1882.1 1888 54.8
Hund19486 Selenicereus undatus HOM05D006132 ORTHO05D007305 0.0e+00 1880.5 1974 53.4
AT4G32820 Arabidopsis thaliana HOM05D006132 ORTHO05D007305 0.0e+00 1880.1 1890 54.2
BcaC09g52078 Brassica carinata HOM05D006132 ORTHO05D007305 0.0e+00 1879.4 1912 53.5
C01p06070 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 1876.3 1904 53.6
Gohir.A07G022180 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 1874.8 1777 56.5
AL7G18910 Arabidopsis lyrata HOM05D006132 ORTHO05D007305 0.0e+00 1868.6 1886 54.3
Thhalv10026823m.g Eutrema salsugineum HOM05D006132 ORTHO05D007305 0.0e+00 1866.3 1888 53.9
A01p05470 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 1859.7 1900 53.4
unitig_0.g2566 Utricularia gibba HOM05D006132 ORTHO05D007305 0.0e+00 1854.3 1890 55.1
BolC1t00600H Brassica oleracea HOM05D006132 ORTHO05D007305 0.0e+00 1847.8 1930 52.8
BraA01t00520Z Brassica rapa HOM05D006132 ORTHO05D007305 0.0e+00 1843.9 1930 52.7
Aa31sc208G40 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 1830.1 1880 53.2
Actinidia01213 Actinidia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1824.7 1920 53.3
Eucgr.C00619 Eucalyptus grandis HOM05D006132 ORTHO05D007305 0.0e+00 1823.9 1872 53.6
Aa31LG5G17300 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 1816.2 1911 52.5
ATR0815G026 Amborella trichopoda HOM05D006132 ORTHO05D007305 0.0e+00 1703.0 2138 45.8
Solyc08g066010.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 0.0e+00 1692.2 1535 59.7
HPP92_019594 Vanilla planifolia HOM05D006132 ORTHO05D007305 0.0e+00 1498.8 1767 48.9
Cpa.g.sc7.235 Carica papaya HOM05D006132 ORTHO05D007305 0.0e+00 1446.4 1603 50.5
CSS0000087 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 0.0e+00 1403.7 1110 66.3
FAN20G0110 Fragaria x ananassa HOM05D006132 ORTHO05D007305 0.0e+00 1370.5 1340 56.1
Pp3c4_1880 Physcomitrium patens HOM05D006132 ORTHO05D007305 0.0e+00 1189.1 2174 36.6
SMO365G0056 Selaginella moellendorffii HOM05D006132 ORTHO05D007305 0.0e+00 1171.4 1931 38.2
Mapoly0021s0014 Marchantia polymorpha HOM05D006132 ORTHO05D007305 0.0e+00 1134.4 2179 35.4
AagrBONN_evm.TU.Sc2ySwM_344.875 Anthoceros agrestis HOM05D006132 ORTHO05D007305 1.8e-306 1057.0 2115 34.6
CSS0048337 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 2.3e-290 1003.4 800 66.4
Nitab4.5_0002021g0060 Nicotiana tabacum HOM05D006132 ORTHO05D007305 6.7e-261 905.6 1384 42.1
Peaxi162Scf00840g00429 Petunia axillaris HOM05D006132 ORTHO05D007305 1.0e-245 855.1 785 60.6
CSS0029204 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 7.4e-236 822.4 799 57.6
CBR_g22939 Chara braunii HOM05D006132 ORTHO05D000048 9.4e-231 805.4 2077 30.7
CARHR240810 Cardamine hirsuta HOM05D006132 ORTHO05D007305 3.1e-226 790.4 673 60.9
SHI18807 Sapria himalayana HOM05D006132 ORTHO05D007305 5.2e-221 773.1 1146 40.5
Psat4g077080 Pisum sativum HOM05D006132 ORTHO05D007305 9.5e-191 672.5 742 52.2
Psat4g077000 Pisum sativum HOM05D006132 ORTHO05D007305 2.7e-169 601.3 724 49.4
SHI18802 Sapria himalayana HOM05D006132 ORTHO05D007305 4.7e-166 590.5 803 44.6
Solyc08g066000.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 6.6e-160 570.1 430 69.1
Peaxi162Scf00840g00428 Petunia axillaris HOM05D006132 ORTHO05D007305 6.2e-150 537.0 385 70.9
TAR636G2276 Trochodendron aralioides HOM05D006132 ORTHO05D007305 1.7e-78 299.7 196 75.0
CSS0021543 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 4.1e-77 295.0 218 68.8
TAR636G0297 Trochodendron aralioides HOM05D006132 ORTHO05D007305 4.1e-77 295.0 494 40.9
Psat2g119040 Pisum sativum HOM05D006132 ORTHO05D007305 7.8e-68 264.2 225 62.2
Zm00001eb053280 Zea mays HOM05D006132 ORTHO05D007305 1.6e-57 229.9 310 40.6
Lsat_1_v5_gn_0_25341 Lactuca sativa HOM05D006132 ORTHO05D007305 1.4e-53 216.9 269 44.2
Cpa.g.sc7.234 Carica papaya HOM05D006132 ORTHO05D007305 2.7e-52 212.6 124 82.3
SHI18803 Sapria himalayana HOM05D006132 ORTHO05D007305 3.1e-48 199.1 295 43.4
Zm00001eb053310 Zea mays HOM05D006132 ORTHO05D007305 8.1e-41 174.5 263 42.6
MBI04_g05153_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 3.8e-30 139.0 145 50.3
Glyma.18G112500 Glycine max HOM05D006132 ORTHO05D007305 1.1e-29 137.5 80 83.8
Carub.0003s0455 Capsella rubella HOM05D006132 ORTHO05D007305 5.1e-27 128.6 195 40.5
MCO10G298 Micromonas commoda HOM05D006132 ORTHO05D007305 7.1e-21 108.2 503 24.5
Sabra06G0183100 Salix brachista HOM05D006132 ORTHO05D007305 2.3e-19 103.2 133 45.9
Os03g0685750 Oryza sativa ssp. japonica HOM05D006132 ORTHO05D007305 1.5e-18 100.5 135 39.3
Zm00001eb053300 Zea mays HOM05D006132 ORTHO05D007305 3.3e-18 99.4 143 38.5
Zm00001eb053290 Zea mays HOM05D006132 ORTHO05D007305 1.5e-15 90.5 68 60.3
CDE12G0288 Ceratophyllum demersum HOM05D004517 ORTHO05D005366 2.9e-14 86.3 58 72.4
CiPaw.04G074200 Carya illinoinensis HOM05D006132 ORTHO05D007305 5.0e-14 85.5 61 65.6
MBI04_g44310_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 9.3e-13 81.3 87 51.7
SMO351G0355 Selaginella moellendorffii HOM05D023170 ORTHO05D007305 1.8e-08 67.0 150 35.3
Glyma.11G174000 Glycine max HOM05D006132 ORTHO05D007305 2.4e-08 66.6 68 44.1
Phvul.003G090001 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 9.1e-08 64.7 118 36.4
MD08G1109200 Malus domestica HOM05D006132 ORTHO05D007305 5.0e-06 58.9 75 46.7


User provided reference genes

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