Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.A00154 Erythranthe guttata HOM05D004579 ORTHO05D005376 7.7e-130 467.2 250 100.0
MSTRG.11672 Avicennia marina HOM05D004579 ORTHO05D005376 2.5e-72 276.2 245 66.5
SGA_v2.0_scaffold88G27218 Striga asiatica HOM05D004579 ORTHO05D005376 7.9e-66 254.6 249 63.1
SalBow4G3199 Salvia bowleyana HOM05D004579 ORTHO05D005376 9.6e-64 247.7 254 63.0
Hma1.2p1_1266F.1_g271430 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 1.8e-62 243.4 253 57.7
CSS0030937 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 5.3e-62 241.9 249 57.8
unitig_736.g22340 Utricularia gibba HOM05D004579 ORTHO05D005376 1.0e-60 237.7 246 55.7
Dinv23423 Davidia involucrata HOM05D004579 ORTHO05D005376 4.9e-60 235.3 249 58.2
Oeu037326.2 Olea europaea HOM05D004579 ORTHO05D005376 1.9e-59 233.4 275 54.9
Manes.03G046600 Manihot esculenta HOM05D004579 ORTHO05D005376 4.2e-59 232.3 259 52.9
DCAR_019057 Daucus carota HOM05D004579 ORTHO05D005376 1.6e-58 230.3 248 58.1
Nitab4.5_0008290g0030 Nicotiana tabacum HOM05D004579 ORTHO05D005376 2.1e-58 229.9 252 59.9
Peaxi162Scf00436g00719 Petunia axillaris HOM05D004579 ORTHO05D005376 6.0e-58 228.4 248 57.3
Nitab4.5_0006174g0020 Nicotiana tabacum HOM05D004579 ORTHO05D005376 1.8e-57 226.9 250 59.6
Nitab4.5_0000359g0090 Nicotiana tabacum HOM05D004579 ORTHO05D005376 3.9e-57 225.7 250 59.2
CAN.G1226.13 Capsicum annuum HOM05D004579 ORTHO05D005376 1.3e-55 220.7 248 54.4
Rhsim07G0143600 Rhododendron simsii HOM05D004579 ORTHO05D005376 2.1e-55 219.9 261 51.3
Solyc04g080350.4 Solanum lycopersicum HOM05D004579 ORTHO05D005376 3.7e-55 219.2 249 57.8
QL07p000612 Quercus lobata HOM05D004579 ORTHO05D005376 2.4e-54 216.5 251 52.2
CiPaw.15G041800 Carya illinoinensis HOM05D004579 ORTHO05D005376 5.3e-54 215.3 245 53.5
Oeu018654.1 Olea europaea HOM05D004579 ORTHO05D005376 5.3e-54 215.3 172 69.2
PGSC0003DMG400005151 Solanum tuberosum HOM05D004579 ORTHO05D005376 6.9e-54 214.9 248 58.1
TWI34G1837 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 1.2e-53 214.2 252 51.6
Dinv27966 Davidia involucrata HOM05D004579 ORTHO05D005376 1.5e-53 213.8 252 49.6
Cc08_g10350 Coffea canephora HOM05D004579 ORTHO05D005376 2.0e-53 213.4 251 54.6
Sopen04g033940 Solanum pennellii HOM05D004579 ORTHO05D005376 2.0e-53 213.4 245 56.7
CANSAT25G0619 Cannabis sativa HOM05D004579 ORTHO05D005376 2.6e-53 213.0 250 54.4
QL02p103256 Quercus lobata HOM05D004579 ORTHO05D005376 2.6e-53 213.0 249 52.2
Duzib168G1792 Durio zibethinus HOM05D004579 ORTHO05D005376 3.4e-53 212.6 252 52.8
Lsat_1_v5_gn_6_7421 Lactuca sativa HOM05D004579 ORTHO05D005376 4.5e-53 212.2 246 52.8
Manes.16G077900 Manihot esculenta HOM05D004579 ORTHO05D005376 5.9e-53 211.8 257 54.1
Psat5g036520 Pisum sativum HOM05D004579 ORTHO05D005376 1.7e-52 210.3 255 53.3
Prupe.1G414900 Prunus persica HOM05D004579 ORTHO05D005376 1.7e-52 210.3 253 53.4
TAR383G0831 Trochodendron aralioides HOM05D004579 ORTHO05D005376 8.5e-52 208.0 259 50.6
HanXRQChr08g0226451 Helianthus annuus HOM05D004579 ORTHO05D005376 1.1e-51 207.6 246 54.5
HanXRQChr08g0226601 Helianthus annuus HOM05D004579 ORTHO05D005376 1.1e-51 207.6 246 54.5
Glyma.04G049800 Glycine max HOM05D004579 ORTHO05D005376 1.4e-51 207.2 246 51.6
Cfa017933 Carpinus fangiana HOM05D004579 ORTHO05D005376 1.9e-51 206.8 245 52.2
TWI63G0708 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 2.5e-51 206.5 252 52.8
Atru.chr7.2020 Acer truncatum HOM05D004579 ORTHO05D005376 3.2e-51 206.1 252 50.8
Ca_15870_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 4.2e-51 205.7 250 50.0
FAN20G3218 Fragaria x ananassa HOM05D004579 ORTHO05D005376 4.2e-51 205.7 258 50.8
Thecc.09G051200 Theobroma cacao HOM05D004579 ORTHO05D005376 4.2e-51 205.7 253 52.2
Gohir.D05G045500 Gossypium hirsutum HOM05D004579 ORTHO05D005376 5.5e-51 205.3 248 54.8
FAN27G3258 Fragaria x ananassa HOM05D004579 ORTHO05D005376 7.2e-51 204.9 255 50.2
Glyma.06G050800 Glycine max HOM05D004579 ORTHO05D005376 9.3e-51 204.5 247 51.4
FAN15G2153 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.6e-50 203.8 255 50.2
FAN24G0041 Fragaria x ananassa HOM05D004579 ORTHO05D005376 2.1e-50 203.4 256 49.6
arahy.Tifrunner.gnm1.ann1.C5JVH4 Arachis hypogaea HOM05D004579 ORTHO05D005376 4.6e-50 202.2 249 49.4
FvH4_2g32180 Fragaria vesca HOM05D004579 ORTHO05D005376 4.6e-50 202.2 256 49.2
Gorai.009G046700 Gossypium raimondii HOM05D004579 ORTHO05D005376 6.1e-50 201.8 248 54.4
Aqoxy7G00927 Aquilegia oxysepala HOM05D004579 ORTHO05D005376 2.3e-49 199.9 252 50.8
Duzib187G0056 Durio zibethinus HOM05D004579 ORTHO05D005376 5.1e-49 198.7 253 53.0
GSVIVG01035344001 Vitis vinifera HOM05D004579 ORTHO05D005376 8.7e-49 198.0 205 60.5
Sc09g0009680 Simmondsia chinensis HOM05D004579 ORTHO05D005376 1.5e-48 197.2 248 52.0
Ah.11g044630 Amaranthus hybridus HOM05D004579 ORTHO05D005376 1.9e-48 196.8 247 51.8
Gohir.A05G043900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.9e-48 196.8 272 50.7
ClCG06G000280 Citrullus lanatus HOM05D004579 ORTHO05D005376 4.3e-48 195.7 245 47.8
Potri.006G232800 Populus trichocarpa HOM05D004579 ORTHO05D005376 7.4e-48 194.9 262 50.0
Sabra06G0181300 Salix brachista HOM05D004579 ORTHO05D005376 9.7e-48 194.5 266 49.2
Phvul.009G076200 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 1.6e-47 193.7 247 48.6
arahy.Tifrunner.gnm1.ann1.XC2JTE Arachis hypogaea HOM05D004579 ORTHO05D005376 2.2e-47 193.4 252 48.8
Gohir.D07G022900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 2.2e-47 193.4 252 47.6
Lalb_Chr22g0355991 Lupinus albus HOM05D004579 ORTHO05D005376 6.3e-47 191.8 251 47.4
MELO3C022510.2 Cucumis melo HOM05D004579 ORTHO05D005376 1.1e-46 191.0 247 49.0
Glyma.14G092900 Glycine max HOM05D004579 ORTHO05D005376 1.1e-46 191.0 249 52.2
Gorai.001G023600 Gossypium raimondii HOM05D004579 ORTHO05D005376 1.1e-46 191.0 252 47.2
HanXRQChr09g0251171 Helianthus annuus HOM05D004579 ORTHO05D005376 1.4e-46 190.7 226 54.0
BraA05t21726Z Brassica rapa HOM05D004579 ORTHO05D005376 2.4e-46 189.9 258 46.5
TPR.G13109 Trifolium pratense HOM05D004579 ORTHO05D005376 2.4e-46 189.9 250 49.6
Ciclev10009210m.g Citrus clementina HOM05D004579 ORTHO05D005376 6.9e-46 188.3 257 50.6
TAR626G1184 Trochodendron aralioides HOM05D004579 ORTHO05D005376 6.9e-46 188.3 187 60.4
VMungo0647G1140 Vigna mungo HOM05D004579 ORTHO05D005376 6.9e-46 188.3 246 47.2
PGR031G0410 Punica granatum HOM05D004579 ORTHO05D005376 1.2e-45 187.6 252 46.4
COL.COLO4_21028 Corchorus olitorius HOM05D004579 ORTHO05D005376 1.5e-45 187.2 248 46.4
Medtr1g016630 Medicago truncatula HOM05D004579 ORTHO05D005376 2.0e-45 186.8 256 47.3
arahy.Tifrunner.gnm1.ann1.Y2NPND Arachis hypogaea HOM05D004579 ORTHO05D005376 3.4e-45 186.0 253 46.2
AT3G20430 Arabidopsis thaliana HOM05D004579 ORTHO05D005376 4.5e-45 185.7 257 48.6
Nn8g38954 Nelumbo nucifera HOM05D004579 ORTHO05D005376 7.7e-45 184.9 246 45.1
PSO210G6518 Papaver somniferum HOM05D004579 ORTHO05D005376 7.7e-45 184.9 269 48.0
Thhalv10021403m.g Eutrema salsugineum HOM05D004579 ORTHO05D005376 1.7e-44 183.7 252 48.0
Lalb_Chr24g0399591 Lupinus albus HOM05D004579 ORTHO05D005376 1.7e-44 183.7 246 47.6
Actinidia14703 Actinidia chinensis HOM05D004579 ORTHO05D005376 2.2e-44 183.3 177 57.6
BcaC05g28330 Brassica carinata HOM05D004579 ORTHO05D005376 2.2e-44 183.3 261 46.7
BolC5t33107H Brassica oleracea HOM05D004579 ORTHO05D005376 2.2e-44 183.3 261 46.7
C05p43910 Brassica napus HOM05D004579 ORTHO05D005376 2.9e-44 183.0 261 47.5
Lj1g0026801 Lotus japonicus HOM05D004579 ORTHO05D005376 3.8e-44 182.6 271 45.8
Hund03357 Selenicereus undatus HOM05D004579 ORTHO05D005376 3.8e-44 182.6 286 44.4
arahy.Tifrunner.gnm1.ann1.A3GFYF Arachis hypogaea HOM05D004579 ORTHO05D005376 5.0e-44 182.2 258 45.3
Ca_02416_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 6.5e-44 181.8 250 48.8
A05p28470 Brassica napus HOM05D004579 ORTHO05D005376 8.5e-44 181.4 261 45.6
PSO210G6474 Papaver somniferum HOM05D004579 ORTHO05D005376 8.5e-44 181.4 272 48.2
Haze_18215 Corylus avellana HOM05D004579 ORTHO05D005376 1.1e-43 181.0 307 42.7
Carub.0003s2037 Capsella rubella HOM05D004579 ORTHO05D005376 3.2e-43 179.5 260 48.1
Eucgr.C00634 Eucalyptus grandis HOM05D004579 ORTHO05D005376 3.2e-43 179.5 254 46.5
FAN24G1203 Fragaria x ananassa HOM05D004579 ORTHO05D005376 3.2e-43 179.5 259 43.6
vmacro05280 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 7.2e-43 178.3 364 39.3
CARHR096140 Cardamine hirsuta HOM05D004579 ORTHO05D005376 9.4e-43 177.9 261 46.4
EL10Ac2g03929 Beta vulgaris HOM05D004579 ORTHO05D005376 2.1e-42 176.8 257 45.9
Sp3g18440 Schrenkiella parvula HOM05D004579 ORTHO05D005376 2.1e-42 176.8 261 46.4
BcaB06g26108 Brassica carinata HOM05D004579 ORTHO05D005376 7.9e-42 174.9 256 44.9
CsaV3_6G006070 Cucumis sativus L. HOM05D004579 ORTHO05D005376 1.0e-41 174.5 245 46.1
Sed0027918 Sechium edule HOM05D004579 ORTHO05D005376 1.4e-41 174.1 245 42.4
ECA233G0431 Erigeron canadensis HOM05D004579 ORTHO05D005376 3.9e-41 172.6 258 47.3
VMungo1309G2710 Vigna mungo HOM05D004579 ORTHO05D005376 8.8e-41 171.4 247 50.2
Aa31LG8G7240 Aethionema arabicum HOM05D004579 ORTHO05D005376 1.1e-40 171.0 253 43.9
Gohir.A07G022140 Gossypium hirsutum HOM05D004579 ORTHO05D005376 2.0e-40 170.2 198 49.5
MBI01_g16584_MAGBIO Magnolia biondii HOM05D004579 ORTHO05D005376 2.0e-40 170.2 263 42.6
CDE02G1740 Ceratophyllum demersum HOM05D004579 ORTHO05D005376 3.3e-40 169.5 247 46.2
AL3G34150 Arabidopsis lyrata HOM05D004579 ORTHO05D005376 5.7e-40 168.7 253 46.2
MSTRG.25939 Avicennia marina HOM05D004579 ORTHO05D005376 3.7e-39 166.0 147 65.3
THA.LOC104811250 Tarenaya hassleriana HOM05D004579 ORTHO05D005376 3.7e-39 166.0 166 49.4
Psat6g019640 Pisum sativum HOM05D004579 ORTHO05D005376 1.4e-38 164.1 256 43.0
Sed0005208 Sechium edule HOM05D004579 ORTHO05D005376 1.4e-38 164.1 247 42.5
Nn6g35393 Nelumbo nucifera HOM05D004579 ORTHO05D005376 4.1e-38 162.5 247 45.7
PGR142G1482 Punica granatum HOM05D004579 ORTHO05D005376 1.2e-37 161.0 250 44.4
Os01g0559200 Oryza sativa ssp. japonica HOM05D004579 ORTHO05D005376 2.6e-37 159.8 266 42.5
ATR0789G072 Amborella trichopoda HOM05D004579 ORTHO05D005376 3.4e-37 159.5 259 40.9
HPP92_014384 Vanilla planifolia HOM05D004579 ORTHO05D005376 4.5e-37 159.1 249 45.8
Zm00001eb356770 Zea mays HOM05D004579 ORTHO05D005376 2.9e-36 156.4 256 43.0
AUR62022041 Chenopodium quinoa HOM05D004579 ORTHO05D005376 5.0e-36 155.6 164 50.0
Lj5g0003794 Lotus japonicus HOM05D004579 ORTHO05D005376 1.9e-35 153.7 243 44.9
PSO017G1019 Papaver somniferum HOM05D004579 ORTHO05D005376 1.2e-34 151.0 170 50.6
CSS0042880 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 3.6e-34 149.4 145 55.9
Hund19474 Selenicereus undatus HOM05D004579 ORTHO05D005376 4.7e-34 149.1 359 34.5
vmacro00165 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 5.3e-30 135.6 251 40.6
TPR.G25353 Trifolium pratense HOM05D004579 ORTHO05D005376 8.8e-25 118.2 124 52.4
PSO063G4337 Papaver somniferum HOM05D004579 ORTHO05D005376 1.2e-24 117.9 221 36.7
SEGI_10906 Sequoiadendron giganteum HOM05D004579 ORTHO05D005376 9.7e-24 114.8 180 38.9
Actinidia18195 Actinidia chinensis HOM05D004579 ORTHO05D005376 6.3e-23 112.1 124 58.9
RcHm_v2.0_Chr6g0310501 Rosa chinensis HOM05D004579 ORTHO05D005376 7.0e-22 108.6 131 48.9
AUR62009186 Chenopodium quinoa HOM05D004579 ORTHO05D005376 2.0e-21 107.1 243 32.5
arahy.Tifrunner.gnm1.ann1.E1I8FT Arachis hypogaea HOM05D004579 ORTHO05D005376 1.3e-20 104.4 157 42.7
Cpa.g.sc84.21 Carica papaya HOM05D004579 ORTHO05D005376 1.1e-19 101.3 249 38.2
CBR_g36456 Chara braunii HOM05D004579 ORTHO05D005376 1.2e-18 97.8 100 45.0
RcHm_v2.0_Chr6g0310491 Rosa chinensis HOM05D004579 ORTHO05D005376 1.6e-18 97.4 127 54.3
AagrBONN_evm.TU.Sc2ySwM_117.2939 Anthoceros agrestis HOM05D004579 ORTHO05D005376 8.0e-18 95.1 194 32.0
PGSC0003DMG400032806 Solanum tuberosum HOM05D004579 ORTHO05D005376 1.5e-16 90.9 68 72.1
Hma1.2p1_1944F.1_g308530 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 2.6e-16 90.1 130 42.3
Mapoly0091s0021 Marchantia polymorpha HOM05D004579 ORTHO05D005376 3.4e-16 89.7 248 32.7
Phvul.001G033700 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 6.3e-15 85.5 153 39.9
Pp3c10_2240 Physcomitrium patens HOM05D004579 ORTHO05D005376 5.4e-14 82.4 99 45.5
TPR.G25355 Trifolium pratense HOM05D004579 ORTHO05D005376 2.3e-12 77.0 131 44.3
QL03p011522 Quercus lobata HOM05D004579 ORTHO05D005376 1.4e-09 67.8 42 73.8
vmacro00163 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 3.4e-08 63.2 159 32.1
arahy.Tifrunner.gnm1.ann1.FCA0JR Arachis hypogaea HOM05D004579 ORTHO05D005376 2.2e-07 60.5 97 40.2
PSO017G0877 Papaver somniferum HOM05D004579 ORTHO05D005376 4.1e-06 56.2 51 51.0
PSO017G5975 Papaver somniferum HOM05D004579 ORTHO05D005376 4.1e-06 56.2 51 51.0


User provided reference genes

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