Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.A00114 Erythranthe guttata HOM05D005314 ORTHO05D006522 3.0e-188 661.8 345 100.0
MSTRG.25961 Avicennia marina HOM05D005314 ORTHO05D006522 1.0e-164 583.6 345 87.0
SalBow4G3021 Salvia bowleyana HOM05D005314 ORTHO05D006522 1.0e-164 583.6 345 87.0
TAR369G0158 Trochodendron aralioides HOM05D005314 ORTHO05D006522 9.9e-160 567.0 338 84.3
TAR636G1106 Trochodendron aralioides HOM05D005314 ORTHO05D006522 9.9e-160 567.0 338 84.3
Actinidia30326 Actinidia chinensis HOM05D005314 ORTHO05D006522 2.2e-159 565.8 346 84.1
SGA_v2.0_scaffold20G09204 Striga asiatica HOM05D005314 ORTHO05D006522 1.4e-158 563.1 392 78.1
Dinv22878 Davidia involucrata HOM05D005314 ORTHO05D006522 4.6e-157 558.1 345 83.5
CSS0005464 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 1.3e-156 556.6 346 82.4
QL02p000736 Quercus lobata HOM05D005314 ORTHO05D006522 1.7e-156 556.2 344 80.8
Haze_18156 Corylus avellana HOM05D005314 ORTHO05D006522 1.3e-154 550.1 345 79.4
CAN.G130.11 Capsicum annuum HOM05D005314 ORTHO05D006522 2.1e-154 549.3 345 81.7
Solyc06g036780.3 Solanum lycopersicum HOM05D005314 ORTHO05D006522 2.1e-154 549.3 345 81.7
Sopen06g012940 Solanum pennellii HOM05D005314 ORTHO05D006522 2.1e-154 549.3 345 81.7
Cfa017974 Carpinus fangiana HOM05D005314 ORTHO05D006522 2.8e-154 548.9 345 78.6
Hma1.2p1_0544F.1_g175630 Hydrangea macrophylla HOM05D005314 ORTHO05D006522 1.2e-152 543.5 344 80.2
CiPaw.15G037000 Carya illinoinensis HOM05D005314 ORTHO05D006522 2.0e-152 542.7 345 78.8
Prupe.1G409300 Prunus persica HOM05D005314 ORTHO05D006522 4.5e-152 541.6 345 79.7
GSVIVG01035376001 Vitis vinifera HOM05D005314 ORTHO05D006522 4.5e-152 541.6 348 79.9
Eucgr.C03058 Eucalyptus grandis HOM05D005314 ORTHO05D006522 9.9e-152 540.4 345 78.8
Manes.03G050000 Manihot esculenta HOM05D005314 ORTHO05D006522 1.1e-150 537.0 345 78.8
Cc08_g10890 Coffea canephora HOM05D005314 ORTHO05D006522 1.9e-150 536.2 341 79.8
Potri.018G060500 Populus trichocarpa HOM05D005314 ORTHO05D006522 4.2e-150 535.0 345 80.0
BolC9t59318H Brassica oleracea HOM05D005314 ORTHO05D006522 7.1e-150 534.3 345 78.3
Thecc.09G057100 Theobroma cacao HOM05D005314 ORTHO05D006522 9.3e-150 533.9 345 77.7
PSO210G6435 Papaver somniferum HOM05D005314 ORTHO05D006522 1.6e-149 533.1 338 79.3
CiPaw.16G027100 Carya illinoinensis HOM05D005314 ORTHO05D006522 3.5e-149 531.9 345 78.0
CANSAT25G2280 Cannabis sativa HOM05D005314 ORTHO05D006522 4.6e-149 531.6 341 79.8
C09p64870 Brassica napus HOM05D005314 ORTHO05D006522 6.0e-149 531.2 345 78.0
RcHm_v2.0_Chr6g0311221 Rosa chinensis HOM05D005314 ORTHO05D006522 6.0e-149 531.2 345 79.4
Lsat_1_v5_gn_6_14601 Lactuca sativa HOM05D005314 ORTHO05D006522 1.0e-148 530.4 345 80.0
PSO210G6321 Papaver somniferum HOM05D005314 ORTHO05D006522 1.0e-148 530.4 346 78.3
BcaNung02637 Brassica carinata HOM05D005314 ORTHO05D006522 1.3e-148 530.0 345 77.1
A10p25800 Brassica napus HOM05D005314 ORTHO05D006522 1.8e-148 529.6 345 77.4
FvH4_2g31600 Fragaria vesca HOM05D005314 ORTHO05D006522 1.8e-148 529.6 345 79.7
CsaV3_4G035770 Cucumis sativus L. HOM05D005314 ORTHO05D006522 3.0e-148 528.9 345 77.7
ECA233G4949 Erigeron canadensis HOM05D005314 ORTHO05D006522 3.0e-148 528.9 345 79.4
TWI34G0632 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 3.0e-148 528.9 338 78.7
A02p01290 Brassica napus HOM05D005314 ORTHO05D006522 3.9e-148 528.5 345 77.1
BraA02t05108Z Brassica rapa HOM05D005314 ORTHO05D006522 3.9e-148 528.5 345 77.1
AUR62009122 Chenopodium quinoa HOM05D005314 ORTHO05D006522 5.1e-148 528.1 343 77.8
MD15G1056700 Malus domestica HOM05D005314 ORTHO05D006522 5.1e-148 528.1 345 78.6
Sp6g31630 Schrenkiella parvula HOM05D005314 ORTHO05D006522 5.1e-148 528.1 345 77.4
Gorai.013G220600 Gossypium raimondii HOM05D005314 ORTHO05D006522 6.7e-148 527.7 345 75.9
Nn8g38796 Nelumbo nucifera HOM05D005314 ORTHO05D006522 6.7e-148 527.7 350 77.4
Gohir.D13G194600 Gossypium hirsutum HOM05D005314 ORTHO05D006522 8.7e-148 527.3 345 75.9
Peaxi162Scf01088g00005 Petunia axillaris HOM05D005314 ORTHO05D006522 8.7e-148 527.3 325 82.2
BcaC03g13403 Brassica carinata HOM05D005314 ORTHO05D006522 1.1e-147 526.9 345 76.8
C02p05500 Brassica napus HOM05D005314 ORTHO05D006522 1.1e-147 526.9 345 76.8
BolC2t06496H Brassica oleracea HOM05D005314 ORTHO05D006522 1.1e-147 526.9 345 76.8
COL.COLO4_21084 Corchorus olitorius HOM05D005314 ORTHO05D006522 1.9e-147 526.2 345 77.7
Gohir.A07G021950 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.9e-147 526.2 345 76.5
TWI32G0330 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 2.5e-147 525.8 338 79.0
THA.LOC104811236 Tarenaya hassleriana HOM05D005314 ORTHO05D006522 3.3e-147 525.4 345 77.1
Aqoxy7G04033 Aquilegia oxysepala HOM05D000411 ORTHO05D006522 5.6e-147 524.6 337 78.3
Thhalv10014010m.g Eutrema salsugineum HOM05D005314 ORTHO05D006522 5.6e-147 524.6 345 76.5
PGR044G2019 Punica granatum HOM05D005314 ORTHO05D006522 5.6e-147 524.6 346 77.5
Gorai.001G022500 Gossypium raimondii HOM05D005314 ORTHO05D006522 7.4e-147 524.2 345 76.5
Potri.006G226000 Populus trichocarpa HOM05D005314 ORTHO05D006522 7.4e-147 524.2 345 78.0
Gohir.A13G187700 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.3e-146 523.5 345 75.7
AL6G22740 Arabidopsis lyrata HOM05D005314 ORTHO05D006522 2.8e-146 522.3 345 76.8
AT5G11960 Arabidopsis thaliana HOM05D005314 ORTHO05D006522 2.8e-146 522.3 345 76.5
Carub.0006s1050 Capsella rubella HOM05D005314 ORTHO05D006522 4.8e-146 521.5 345 76.5
ClCG05G017990 Citrullus lanatus HOM05D005314 ORTHO05D006522 4.8e-146 521.5 344 77.9
BraA10t44644Z Brassica rapa HOM05D005314 ORTHO05D006522 8.1e-146 520.8 357 74.8
MD08G1064900 Malus domestica HOM05D005314 ORTHO05D006522 1.1e-145 520.4 345 77.4
Rhsim11G0042200 Rhododendron simsii HOM05D005314 ORTHO05D006522 1.1e-145 520.4 367 75.5
Sed0001440 Sechium edule HOM05D005314 ORTHO05D006522 1.1e-145 520.4 345 76.5
Aa31LG3G15270 Aethionema arabicum HOM05D005314 ORTHO05D006522 8.4e-143 510.8 357 73.4
Ca_13152_v3 Cicer arietinum L. HOM05D005314 ORTHO05D006522 1.9e-142 509.6 345 75.9
HanXRQChr08g0226511 Helianthus annuus HOM05D005314 ORTHO05D006522 1.2e-141 506.9 345 77.1
MELO3C016882.2 Cucumis melo HOM05D005314 ORTHO05D006522 3.5e-141 505.4 345 75.7
Phvul.001G037500 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 7.9e-141 504.2 345 74.5
Glyma.06G053100 Glycine max HOM05D005314 ORTHO05D006522 3.0e-140 502.3 345 73.9
FAN27G1630 Fragaria x ananassa HOM05D005314 ORTHO05D006522 5.1e-140 501.5 345 76.5
Lj1g0000731 Lotus japonicus HOM05D005314 ORTHO05D006522 3.3e-139 498.8 345 72.2
Psat6g021480 Pisum sativum HOM05D005314 ORTHO05D006522 3.3e-139 498.8 345 75.1
ATR0789G137 Amborella trichopoda HOM05D005314 ORTHO05D006522 5.6e-139 498.0 345 72.5
Hund19438 Selenicereus undatus HOM05D005314 ORTHO05D006522 1.3e-138 496.9 343 75.2
Ciclev10008891m.g Citrus clementina HOM05D005314 ORTHO05D006522 1.6e-138 496.5 337 75.1
TPR.G13039 Trifolium pratense HOM05D005314 ORTHO05D006522 2.1e-138 496.1 347 73.8
Lalb_Chr11g0063171 Lupinus albus HOM05D005314 ORTHO05D006522 3.7e-138 495.4 345 72.5
Medtr1g015820 Medicago truncatula HOM05D005314 ORTHO05D006522 3.7e-138 495.4 347 73.8
Phvul.009G078900 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 1.5e-136 490.0 336 71.7
Glyma.14G097400 Glycine max HOM05D005314 ORTHO05D006522 3.4e-136 488.8 351 72.1
VMungo0647G2045 Vigna mungo HOM05D005314 ORTHO05D006522 3.4e-136 488.8 358 71.2
Sabra18G0054400 Salix brachista HOM05D005314 ORTHO05D006522 2.7e-133 479.2 415 64.6
Lalb_Chr22g0356141 Lupinus albus HOM05D005314 ORTHO05D006522 4.3e-131 471.9 309 75.4
CDE06G1634 Ceratophyllum demersum HOM05D005314 ORTHO05D006522 7.4e-131 471.1 345 71.3
FAN24G2134 Fragaria x ananassa HOM05D005314 ORTHO05D006522 3.1e-129 465.7 308 78.9
MBI01_g21122_MAGBIO Magnolia biondii HOM05D005314 ORTHO05D006522 3.1e-129 465.7 336 72.0
FAN15G2750 Fragaria x ananassa HOM05D005314 ORTHO05D006522 6.9e-129 464.5 308 78.6
VMungo1309G2963 Vigna mungo HOM05D005314 ORTHO05D006522 2.6e-128 462.6 336 69.0
Atru.chr7.1939 Acer truncatum HOM05D005314 ORTHO05D006522 4.5e-128 461.8 272 84.6
Lj8A530G14 Lonicera japonica HOM05D005314 ORTHO05D006522 2.2e-127 459.5 295 82.0
HPP92_007653 Vanilla planifolia HOM05D005314 ORTHO05D006522 5.0e-127 458.4 339 69.0
DCAR_007733 Daucus carota HOM05D005314 ORTHO05D006522 3.9e-124 448.7 397 62.5
Glyma.04G052700 Glycine max HOM05D005314 ORTHO05D006522 2.5e-123 446.0 308 72.4
Lalb_Chr14g0366381 Lupinus albus HOM05D005314 ORTHO05D006522 4.3e-123 445.3 272 79.4
Sc23g0005690 Simmondsia chinensis HOM05D005314 ORTHO05D006522 4.8e-122 441.8 343 68.8
Oeu003996.1 Olea europaea HOM05D005314 ORTHO05D006522 1.4e-121 440.3 328 74.1
arahy.Tifrunner.gnm1.ann1.VQ1HGR Arachis hypogaea HOM05D005314 ORTHO05D006522 5.3e-121 438.3 345 68.4
Glyma.17G227100 Glycine max HOM05D005314 ORTHO05D006522 1.2e-120 437.2 345 67.5
vmacro00123 Vaccinium macrocarpon HOM05D005314 ORTHO05D006522 2.5e-118 429.5 293 76.8
Sabra06G0174700 Salix brachista HOM05D005314 ORTHO05D006522 1.3e-114 417.2 418 57.2
arahy.Tifrunner.gnm1.ann1.UTD444 Arachis hypogaea HOM05D005314 ORTHO05D006522 1.8e-113 413.3 345 64.1
arahy.Tifrunner.gnm1.ann1.GAY7D4 Arachis hypogaea HOM05D005314 ORTHO05D006522 4.1e-113 412.1 345 63.8
unitig_88.g27677 Utricularia gibba HOM05D005314 ORTHO05D006522 6.7e-108 394.8 384 56.8
Dinv28005 Davidia involucrata HOM05D005314 ORTHO05D006522 3.1e-105 386.0 222 86.0
EL10Ac2g03829 Beta vulgaris HOM05D005314 ORTHO05D006522 2.6e-104 382.9 343 61.5
Duzib150G1607 Durio zibethinus HOM05D005314 ORTHO05D006522 2.5e-102 376.3 222 82.4
Sed0024799 Sechium edule HOM05D005314 ORTHO05D006522 1.1e-97 360.9 250 74.4
arahy.Tifrunner.gnm1.ann1.6D5JL1 Arachis hypogaea HOM05D005314 ORTHO05D006522 1.0e-95 354.4 345 58.8
Nitab4.5_0000972g0030 Nicotiana tabacum HOM05D005314 ORTHO05D006522 4.7e-93 345.5 435 50.3
Nitab4.5_0000268g0140 Nicotiana tabacum HOM05D005314 ORTHO05D006522 1.5e-91 340.5 344 56.7
Gohir.D07G021900 Gossypium hirsutum HOM05D005314 ORTHO05D006522 3.1e-89 332.8 204 80.4
Ah.10g034130 Amaranthus hybridus HOM05D005314 ORTHO05D006522 3.1e-81 306.2 249 67.5
Mapoly0049s0128 Marchantia polymorpha HOM05D005314 ORTHO05D006522 9.2e-81 304.7 311 53.1
Zm00001eb155260 Zea mays HOM05D005314 ORTHO05D006522 3.6e-77 292.7 249 61.4
MD11G1243300 Malus domestica HOM05D005314 ORTHO05D006522 4.0e-76 289.3 169 85.2
CARHR201170 Cardamine hirsuta HOM05D005314 ORTHO05D006522 3.4e-75 286.2 202 71.3
Hund03325 Selenicereus undatus HOM05D005314 ORTHO05D006522 4.0e-68 262.7 255 57.3
Pp3c7_50 Physcomitrium patens HOM05D005314 ORTHO05D006522 7.5e-67 258.5 268 48.9
Lj7A260G18 Lonicera japonica HOM05D005314 ORTHO05D006522 1.7e-58 230.7 238 57.6
Cpa.g.sc7.160 Carica papaya HOM05D005314 ORTHO05D006522 6.6e-55 218.8 144 77.1
Os01g0708300 Oryza sativa ssp. japonica HOM05D005314 ORTHO05D006522 1.2e-53 214.5 144 71.5
Cpa.g.sc7.159 Carica papaya HOM05D005314 ORTHO05D006522 8.1e-53 211.8 171 65.5
RcHm_v2.0_Chr1g0383701 Rosa chinensis HOM05D005314 ORTHO05D006522 5.2e-52 209.1 159 65.4
CSS0003098 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 9.6e-46 188.3 110 86.4
CBR_g50008 Chara braunii HOM05D005314 ORTHO05D006522 2.8e-45 186.8 357 34.7
AUR62039137 Chenopodium quinoa HOM05D005314 ORTHO05D006522 5.8e-43 179.1 131 71.8
arahy.Tifrunner.gnm1.ann1.IMU44M Arachis hypogaea HOM05D005314 ORTHO05D006522 1.7e-42 177.6 184 56.0
PGSC0003DMG400031356 Solanum tuberosum HOM05D005314 ORTHO05D006522 9.3e-41 171.8 124 72.6
PRCOL_00001271 Prasinoderma coloniale HOM05D005314 ORTHO05D006522 1.2e-40 171.4 323 32.8
MCO12G408 Micromonas commoda HOM05D005314 ORTHO05D006522 2.1e-40 170.6 313 36.7
Cre10.g419700 Chlamydomonas reinhardtii HOM05D005314 ORTHO05D006522 7.8e-40 168.7 333 33.6
BcaB03g16563 Brassica carinata HOM05D005314 ORTHO05D006522 1.4e-28 131.3 113 61.9
Oeu040341.1 Olea europaea HOM05D005314 ORTHO05D006522 9.0e-28 128.6 74 86.5
CSS0034519 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 1.1e-22 111.7 95 68.4
Gohir.D07G021800 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.1e-22 111.7 95 61.1
arahy.Tifrunner.gnm1.ann1.TY68CU Arachis hypogaea HOM05D005314 ORTHO05D005864 5.3e-20 102.8 106 58.5
SEGI_34785 Sequoiadendron giganteum HOM05D005314 ORTHO05D006522 2.0e-19 100.9 73 65.8


User provided reference genes

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