Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.A00112 Erythranthe guttata HOM05D001920 ORTHO05D004895 4.3e-95 351.3 173 100.0
Migut.D00409 Erythranthe guttata HOM05D001920 ORTHO05D004895 4.1e-90 334.7 165 100.0
Oeu018622.1 Olea europaea HOM05D001920 ORTHO05D004895 1.0e-64 250.4 173 72.3
MSTRG.11648 Avicennia marina HOM05D001920 ORTHO05D004895 4.3e-63 245.0 166 73.5
SalBow4G0898 Salvia bowleyana HOM05D001920 ORTHO05D004895 1.4e-61 240.0 166 71.1
SGA_v2.0_scaffold20G09202 Striga asiatica HOM05D001920 ORTHO05D004895 2.9e-59 232.3 178 66.9
Dinv12436 Davidia involucrata HOM05D001920 ORTHO05D004895 6.0e-57 224.6 172 65.1
Cc08_g10920 Coffea canephora HOM05D001920 ORTHO05D004895 6.7e-56 221.1 167 67.7
CAN.G1312.6 Capsicum annuum HOM05D001920 ORTHO05D004895 1.1e-55 220.3 173 65.3
Sopen08g018250 Solanum pennellii HOM05D001920 ORTHO05D004895 1.9e-55 219.5 173 65.3
Nitab4.5_0003458g0040 Nicotiana tabacum HOM05D001920 ORTHO05D004895 3.3e-55 218.8 173 65.3
Hma1.2p1_0196F.1_g084790 Hydrangea macrophylla HOM05D001920 ORTHO05D004895 5.7e-55 218.0 166 67.5
Nitab4.5_0003730g0040 Nicotiana tabacum HOM05D001920 ORTHO05D004895 5.7e-55 218.0 173 65.3
Solyc08g062770.3 Solanum lycopersicum HOM05D001920 ORTHO05D004895 9.6e-55 217.2 173 65.3
GSVIVG01012560001 Vitis vinifera HOM05D001920 ORTHO05D004895 9.6e-55 217.2 167 65.9
unitig_748.g8245 Utricularia gibba HOM05D001920 ORTHO05D004895 2.1e-54 216.1 165 64.8
Lj7C259G6 Lonicera japonica HOM05D001920 ORTHO05D004895 2.8e-54 215.7 173 61.8
Peaxi162Scf00070g00315 Petunia axillaris HOM05D001920 ORTHO05D004895 3.7e-54 215.3 173 65.3
CSS0015201 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D004895 1.1e-53 213.8 173 63.6
Lj7C264T3 Lonicera japonica HOM05D001920 ORTHO05D004895 3.1e-53 212.2 173 60.1
Manes.16G082500 Manihot esculenta HOM05D001920 ORTHO05D004895 4.1e-53 211.8 171 64.9
GSVIVG01012573001 Vitis vinifera HOM05D001920 ORTHO05D004895 1.5e-52 209.9 184 59.8
TAR626G1466 Trochodendron aralioides HOM05D001920 ORTHO05D004895 2.6e-52 209.1 173 62.4
THA.LOC104819893 Tarenaya hassleriana HOM05D001920 ORTHO05D004895 3.4e-52 208.8 167 64.1
EL10Ac2g03824 Beta vulgaris HOM05D001920 ORTHO05D004895 1.3e-51 206.8 172 63.4
Carub.0001s3487 Capsella rubella HOM05D001920 ORTHO05D004895 2.9e-51 205.7 175 62.9
Lalb_Chr14g0366411 Lupinus albus HOM05D001920 ORTHO05D004895 2.9e-51 205.7 174 62.1
CiPaw.15G036700 Carya illinoinensis HOM05D001920 ORTHO05D004895 3.8e-51 205.3 174 62.6
Glyma.14G097800 Glycine max HOM05D001920 ORTHO05D004895 3.8e-51 205.3 174 60.9
AL4G18730 Arabidopsis lyrata HOM05D001920 ORTHO05D004895 5.0e-51 204.9 175 61.7
A04p20270 Brassica napus HOM05D001920 ORTHO05D004895 5.0e-51 204.9 165 65.5
BraA04t17606Z Brassica rapa HOM05D001920 ORTHO05D004895 5.0e-51 204.9 165 65.5
Sp4g06300 Schrenkiella parvula HOM05D001920 ORTHO05D004895 5.0e-51 204.9 175 61.7
HanXRQChr10g0309731 Helianthus annuus HOM05D001920 ORTHO05D004895 6.5e-51 204.5 165 61.8
BcaNung07165 Brassica carinata HOM05D001920 ORTHO05D004895 8.4e-51 204.1 165 63.6
C04p55980 Brassica napus HOM05D001920 ORTHO05D004895 8.4e-51 204.1 165 63.6
BolC4t27131H Brassica oleracea HOM05D001920 ORTHO05D004895 8.4e-51 204.1 165 63.6
AT2G26200 Arabidopsis thaliana HOM05D001920 ORTHO05D004895 1.1e-50 203.8 175 60.6
Lsat_1_v5_gn_4_71781 Lactuca sativa HOM05D001920 ORTHO05D004895 1.4e-50 203.4 165 64.2
Potri.006G225600 Populus trichocarpa HOM05D001920 ORTHO05D004895 1.4e-50 203.4 176 61.4
QL02p000696 Quercus lobata HOM05D001920 ORTHO05D004895 1.4e-50 203.4 175 61.7
Phvul.001G092600 Phaseolus vulgaris HOM05D001920 ORTHO05D004895 1.9e-50 203.0 173 59.5
Thhalv10001947m.g Eutrema salsugineum HOM05D001920 ORTHO05D004895 2.5e-50 202.6 175 61.1
Aa31LG5G9590 Aethionema arabicum HOM05D001920 ORTHO05D004895 4.2e-50 201.8 174 62.1
MD08G1065700 Malus domestica HOM05D001920 ORTHO05D004895 7.1e-50 201.1 175 62.9
Haze_18152 Corylus avellana HOM05D001920 ORTHO05D004895 9.3e-50 200.7 176 61.9
CARHR115020 Cardamine hirsuta HOM05D001920 ORTHO05D004895 2.1e-49 199.5 165 62.4
Ciclev10007880m.g Citrus clementina HOM05D001920 ORTHO05D004895 2.1e-49 199.5 180 60.0
CsaV3_4G035790 Cucumis sativus L. HOM05D001920 ORTHO05D004895 2.1e-49 199.5 172 60.5
vmacro21977 Vaccinium macrocarpon HOM05D001920 ORTHO05D004895 2.1e-49 199.5 189 56.6
MELO3C016884.2 Cucumis melo HOM05D001920 ORTHO05D004895 2.7e-49 199.1 171 60.2
Nn8g38776 Nelumbo nucifera HOM05D001920 ORTHO05D004895 2.7e-49 199.1 171 57.9
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 3.5e-49 198.7 175 62.9
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 3.5e-49 198.7 173 60.1
Prupe.1G408900 Prunus persica HOM05D001920 ORTHO05D004895 4.6e-49 198.4 175 62.3
Sc23g0005760 Simmondsia chinensis HOM05D001920 ORTHO05D004895 4.6e-49 198.4 173 64.2
Ah.10g034110 Amaranthus hybridus HOM05D001920 ORTHO05D004895 7.9e-49 197.6 173 60.7
RcHm_v2.0_Chr6g0311271 Rosa chinensis HOM05D001920 ORTHO05D004895 7.9e-49 197.6 176 60.2
Aqoxy7G04000 Aquilegia oxysepala HOM05D001920 ORTHO05D004895 1.0e-48 197.2 173 59.0
arahy.Tifrunner.gnm1.ann1.Z4JLGK Arachis hypogaea HOM05D001920 ORTHO05D004895 1.0e-48 197.2 171 60.2
COL.COLO4_21091 Corchorus olitorius HOM05D001920 ORTHO05D004895 1.0e-48 197.2 173 59.0
TWI34G1198 Tripterygium wilfordii HOM05D001920 ORTHO05D004895 1.0e-48 197.2 177 61.0
VMungo0647G0099 Vigna mungo HOM05D001920 ORTHO05D004895 1.3e-48 196.8 173 57.8
Lj5g0021243 Lotus japonicus HOM05D001920 ORTHO05D004895 1.8e-48 196.4 174 56.9
TPR.G13113 Trifolium pratense HOM05D001920 ORTHO05D004895 3.0e-48 195.7 177 58.8
TWI32G0956 Tripterygium wilfordii HOM05D001920 ORTHO05D004895 3.0e-48 195.7 177 59.3
ClCG05G018010 Citrullus lanatus HOM05D001920 ORTHO05D004895 5.1e-48 194.9 171 59.1
Psat6g021640 Pisum sativum HOM05D001920 ORTHO05D004895 5.1e-48 194.9 179 57.0
Ca_13119_v3 Cicer arietinum L. HOM05D001920 ORTHO05D004895 6.7e-48 194.5 175 58.3
Cpa.g.sc7.156 Carica papaya HOM05D001920 ORTHO05D004895 1.1e-47 193.7 173 60.1
DCAR_004400 Daucus carota HOM05D001920 ORTHO05D004895 1.1e-47 193.7 169 59.8
Gohir.A06G085800 Gossypium hirsutum HOM05D001920 ORTHO05D004895 1.1e-47 193.7 170 60.0
AUR62039141 Chenopodium quinoa HOM05D001920 ORTHO05D004895 1.5e-47 193.4 168 61.9
arahy.Tifrunner.gnm1.ann1.ZYB4F6 Arachis hypogaea HOM05D001920 ORTHO05D004895 1.9e-47 193.0 171 59.1
ECA234G4475 Erigeron canadensis HOM05D001920 ORTHO05D004895 1.9e-47 193.0 165 59.4
Eucgr.C03062 Eucalyptus grandis HOM05D001920 ORTHO05D004895 2.5e-47 192.6 177 58.2
Gorai.010G098400 Gossypium raimondii HOM05D001920 ORTHO05D004895 3.3e-47 192.2 170 59.4
PGR044G1960 Punica granatum HOM05D001920 ORTHO05D004895 3.3e-47 192.2 172 58.1
Actinidia25711 Actinidia chinensis HOM05D001920 ORTHO05D004895 4.3e-47 191.8 165 61.8
Thecc.09G057600 Theobroma cacao HOM05D001920 ORTHO05D004895 5.7e-47 191.4 166 60.8
CANSAT25G1922 Cannabis sativa HOM05D001920 ORTHO05D004895 7.4e-47 191.0 165 61.2
Gohir.D06G085100 Gossypium hirsutum HOM05D001920 ORTHO05D004895 1.3e-46 190.3 170 58.8
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.6e-46 189.9 177 59.9
FvH4_2g31511 Fragaria vesca HOM05D001920 ORTHO05D004895 2.2e-46 189.5 180 58.3
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.7e-46 188.7 177 59.3
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 4.8e-46 188.3 180 57.2
Sed0026712 Sechium edule HOM05D001920 ORTHO05D004895 6.3e-46 188.0 175 57.7
Atru.chr7.1933 Acer truncatum HOM05D001920 ORTHO05D004895 1.1e-45 187.2 174 58.0
Duzib168G0495 Durio zibethinus HOM05D001920 ORTHO05D004895 2.4e-45 186.0 171 58.5
PSO210G1339 Papaver somniferum HOM05D001920 ORTHO05D004895 3.8e-43 178.7 179 53.6
AUR62009117 Chenopodium quinoa HOM05D001920 ORTHO05D004895 1.9e-42 176.4 204 50.0
PSO210G7567 Papaver somniferum HOM05D001920 ORTHO05D004895 1.6e-41 173.3 182 53.8
Medtr1g015770 Medicago truncatula HOM05D001920 ORTHO05D004895 8.8e-40 167.5 179 50.3
ATR0716G012 Amborella trichopoda HOM05D001920 ORTHO05D004895 4.3e-39 165.2 179 50.8
MBI11_g07545_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D004895 4.8e-38 161.8 158 54.4
HPP92_005010 Vanilla planifolia HOM05D001920 ORTHO05D004895 1.5e-36 156.8 171 49.1
SHI18719 Sapria himalayana HOM05D001920 ORTHO05D004895 4.5e-36 155.2 183 47.5
MBI15_g23252_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D004895 3.7e-30 135.6 158 49.4
Zm00001eb003510 Zea mays HOM05D001920 ORTHO05D004895 1.7e-27 126.7 163 44.2
CDE02G3203 Ceratophyllum demersum HOM05D001920 ORTHO05D004895 3.8e-27 125.6 136 48.5
Lalb_Chr24g0399761 Lupinus albus HOM05D001920 ORTHO05D004895 1.6e-25 120.2 85 63.5
SMO352G0077 Selaginella moellendorffii HOM05D001920 ORTHO05D004895 1.6e-25 120.2 164 41.5
Pp3c15_20230 Physcomitrium patens HOM05D001920 ORTHO05D004895 2.7e-25 119.4 167 40.7
MD15G1055800 Malus domestica HOM05D001920 ORTHO05D004895 8.8e-24 114.4 144 50.7
Mapoly0046s0004 Marchantia polymorpha HOM05D001920 ORTHO05D004895 8.8e-24 114.4 199 36.2
Hund03323 Selenicereus undatus HOM05D001920 ORTHO05D004895 1.2e-20 104.0 64 78.1
Glyma.17G226800 Glycine max HOM05D001920 ORTHO05D004895 3.5e-20 102.4 114 53.5
MBI15_g23249_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D004895 1.7e-19 100.1 109 50.5
Hund03421 Selenicereus undatus HOM05D001920 ORTHO05D004895 2.9e-19 99.4 113 48.7
TAR383G0380 Trochodendron aralioides HOM05D001920 ORTHO05D004895 1.9e-18 96.7 73 57.5
CBR_g6740 Chara braunii HOM05D000019 ORTHO05D000002 2.5e-18 96.3 78 59.0
PSO063G2358 Papaver somniferum HOM05D001920 ORTHO05D004895 1.6e-17 93.6 73 57.5
PSO832G0401 Papaver somniferum HOM05D001920 ORTHO05D004895 6.1e-17 91.7 73 54.8
GSVIVG01016814001 Vitis vinifera HOM05D001920 ORTHO05D004895 1.4e-16 90.5 73 53.4
Dinv30362 Davidia involucrata HOM05D001920 ORTHO05D004895 6.8e-16 88.2 73 52.1
Aqoxy6G01567 Aquilegia oxysepala HOM05D001920 ORTHO05D004895 4.4e-15 85.5 77 49.4
Ciclev10027563m.g Citrus clementina HOM05D001920 ORTHO05D004895 2.2e-14 83.2 73 49.3
COL.COLO4_30718 Corchorus olitorius HOM05D001920 ORTHO05D004895 2.2e-14 83.2 75 49.3
TWI79G1757 Tripterygium wilfordii HOM05D001920 ORTHO05D004895 2.2e-14 83.2 74 47.3
Gohir.D04G008700 Gossypium hirsutum HOM05D001920 ORTHO05D004895 8.3e-14 81.3 74 48.6
Gorai.012G010500 Gossypium raimondii HOM05D001920 ORTHO05D004895 8.3e-14 81.3 74 48.6
ECA247G3878 Erigeron canadensis HOM05D001920 ORTHO05D004895 1.1e-13 80.9 75 49.3
arahy.Tifrunner.gnm1.ann1.Z1X8E4 Arachis hypogaea HOM05D001920 ORTHO05D004895 3.1e-13 79.3 141 36.9
Atru.chr1.3803 Acer truncatum HOM05D001920 ORTHO05D004895 4.1e-13 79.0 74 44.6
Migut.I01051 Erythranthe guttata HOM05D001920 ORTHO05D004895 4.1e-13 79.0 72 47.2
HanXRQChr08g0234031 Helianthus annuus HOM05D001920 ORTHO05D004895 5.4e-13 78.6 74 48.6
PGR119G1597 Punica granatum HOM05D001920 ORTHO05D004895 5.4e-13 78.6 86 45.3
MSTRG.10969 Avicennia marina HOM05D001920 ORTHO05D004895 9.1e-13 77.8 76 44.7
Oeu002490.2 Olea europaea HOM05D001920 ORTHO05D004895 9.1e-13 77.8 71 46.5
Actinidia26040 Actinidia chinensis HOM05D001920 ORTHO05D004895 2.0e-12 76.6 73 49.3
Cc04_g01640 Coffea canephora HOM05D001920 ORTHO05D004895 2.0e-12 76.6 71 45.1
CAN.G862.17 Capsicum annuum HOM05D001920 ORTHO05D004895 3.5e-12 75.9 71 43.7
Eucgr.F03163 Eucalyptus grandis HOM05D001920 ORTHO05D004895 3.5e-12 75.9 79 44.3
PGSC0003DMG400002574 Solanum tuberosum HOM05D001920 ORTHO05D004895 5.9e-12 75.1 71 43.7
Solyc03g121870.3 Solanum lycopersicum HOM05D001920 ORTHO05D004895 1.7e-11 73.6 71 42.3
Sopen03g040690 Solanum pennellii HOM05D001920 ORTHO05D004895 1.7e-11 73.6 71 42.3
SalBow6G2588 Salvia bowleyana HOM05D001920 ORTHO05D004895 5.0e-11 72.0 64 50.0
vmacro20642 Vaccinium macrocarpon HOM05D001920 ORTHO05D004895 6.5e-11 71.6 66 50.0
vmacro17039 Vaccinium macrocarpon HOM05D001920 ORTHO05D004895 8.5e-11 71.2 66 50.0
Rhsim12G0208300 Rhododendron simsii HOM05D001920 ORTHO05D004895 1.5e-10 70.5 66 48.5
Cre05.g239050 Chlamydomonas reinhardtii HOM05D001920 ORTHO05D004895 4.2e-10 68.9 77 44.2
Hma1.2p1_0496F.1_g166080 Hydrangea macrophylla HOM05D001920 ORTHO05D004895 5.5e-10 68.6 66 43.9
MCO01G470 Micromonas commoda HOM05D001920 ORTHO05D004895 8.0e-09 64.7 69 43.5
SEGI_16446 Sequoiadendron giganteum HOM05D007002 ORTHO05D008602 3.0e-08 62.8 64 46.9
Peaxi162Scf00038g01742 Petunia axillaris HOM05D001920 ORTHO05D004895 4.0e-08 62.4 62 43.5
Lsat_1_v5_gn_1_37201 Lactuca sativa HOM05D001920 ORTHO05D004895 4.4e-07 58.9 47 55.3
Nitab4.5_0004928g0070 Nicotiana tabacum HOM05D007002 ORTHO05D008602 1.3e-06 57.4 65 40.0
Solyc11g006130.2 Solanum lycopersicum HOM05D007002 ORTHO05D008602 2.8e-06 56.2 65 38.5
CAN.G1256.10 Capsicum annuum HOM05D007002 ORTHO05D008602 3.7e-06 55.8 65 38.5
Nitab4.5_0000856g0230 Nicotiana tabacum HOM05D007002 ORTHO05D008602 4.9e-06 55.5 65 38.5
Atru.chr2.890 Acer truncatum HOM05D007002 ORTHO05D008602 8.3e-06 54.7 65 41.5
Ciclev10021195m.g Citrus clementina HOM05D007002 ORTHO05D008602 8.3e-06 54.7 65 40.0
Sed0009113 Sechium edule HOM05D007002 ORTHO05D008602 8.3e-06 54.7 66 42.4


User provided reference genes

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