Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.A00009 Erythranthe guttata HOM05D004744 ORTHO05D005655 0.0e+00 1246.5 658 100.0
MSTRG.11596 Avicennia marina HOM05D004744 ORTHO05D005655 1.5e-252 876.3 646 72.4
SGA_v2.0_scaffold64G21986 Striga asiatica HOM05D004744 ORTHO05D005655 1.1e-228 797.0 665 66.2
Oeu033353.1 Olea europaea HOM05D004744 ORTHO05D005655 2.3e-226 789.3 660 64.4
Sopen08g011940 Solanum pennellii HOM05D004744 ORTHO05D005655 2.3e-213 746.1 634 61.7
CAN.G326.4 Capsicum annuum HOM05D004744 ORTHO05D005655 4.7e-211 738.4 635 61.4
Actinidia13213 Actinidia chinensis HOM05D004744 ORTHO05D005655 3.4e-209 732.3 630 61.4
CSS0007985 Camellia sinensis var. sinensis HOM05D004744 ORTHO05D005655 3.0e-205 719.2 632 61.4
Lsat_1_v5_gn_1_43821 Lactuca sativa HOM05D004744 ORTHO05D005655 4.4e-201 705.3 631 59.4
Nitab4.5_0002992g0040 Nicotiana tabacum HOM05D004744 ORTHO05D005655 1.4e-199 700.3 634 59.3
Cc08_g00230 Coffea canephora HOM05D004744 ORTHO05D005655 2.4e-199 699.5 631 57.8
TAR625G1411 Trochodendron aralioides HOM05D004744 ORTHO05D005655 2.1e-198 696.4 629 59.1
Rhsim02G0205700 Rhododendron simsii HOM05D004744 ORTHO05D005655 1.7e-197 693.3 630 59.0
HanXRQChr01g0030631 Helianthus annuus HOM05D004744 ORTHO05D005655 1.9e-196 689.9 631 58.5
GSVIVG01035922001 Vitis vinifera HOM05D004744 ORTHO05D005655 5.6e-196 688.3 631 59.0
Solyc08g041780.3 Solanum lycopersicum HOM05D004744 ORTHO05D005655 1.6e-195 686.8 634 58.0
QL02p020429 Quercus lobata HOM05D004744 ORTHO05D005655 5.3e-194 681.8 634 58.0
Thecc.09G019800 Theobroma cacao HOM05D004744 ORTHO05D005655 9.9e-193 677.6 629 58.2
PGR142G3966 Punica granatum HOM05D004744 ORTHO05D005655 3.8e-192 675.6 633 57.3
Gorai.010G116900 Gossypium raimondii HOM05D004744 ORTHO05D005655 5.4e-191 671.8 630 58.3
CiPaw.08G008500 Carya illinoinensis HOM05D004744 ORTHO05D005655 4.6e-190 668.7 630 57.6
Atru.chr7.2497 Acer truncatum HOM05D004744 ORTHO05D005655 6.0e-190 668.3 632 58.2
Gohir.D06G101900 Gossypium hirsutum HOM05D004744 ORTHO05D005655 2.3e-189 666.4 629 58.0
ECA248G1191 Erigeron canadensis HOM05D004744 ORTHO05D005655 5.1e-189 665.2 637 56.0
Ciclev10007726m.g Citrus clementina HOM05D004744 ORTHO05D005655 1.1e-188 664.1 630 55.9
Potri.018G022800 Populus trichocarpa HOM05D004744 ORTHO05D005655 1.3e-187 660.6 629 56.3
Sabra18G0025200 Salix brachista HOM05D004744 ORTHO05D005655 1.4e-186 657.1 629 56.4
Lj8C731T12 Lonicera japonica HOM05D004744 ORTHO05D005655 2.4e-186 656.4 576 60.9
Aqoxy7G03541 Aquilegia oxysepala HOM05D004744 ORTHO05D005655 3.8e-184 649.0 629 55.3
PSO063G6514 Papaver somniferum HOM05D004744 ORTHO05D005655 3.5e-182 642.5 631 54.0
THA.LOC104805576 Tarenaya hassleriana HOM05D004744 ORTHO05D005655 1.3e-181 640.6 630 54.6
Lj1g0018058 Lotus japonicus HOM05D004744 ORTHO05D005655 3.9e-181 639.0 630 54.1
MD15G1130500 Malus domestica HOM05D004744 ORTHO05D005655 3.9e-181 639.0 629 55.8
FAN20G1207 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.1e-180 637.5 629 54.1
Psat5g030800 Pisum sativum HOM05D004744 ORTHO05D005655 4.3e-180 635.6 629 55.0
FAN24G2392 Fragaria x ananassa HOM05D004744 ORTHO05D005655 2.8e-179 632.9 629 53.7
FvH4_2g28330 Fragaria vesca HOM05D004744 ORTHO05D005655 6.2e-179 631.7 629 53.6
Ca_15759_v3 Cicer arietinum L. HOM05D004744 ORTHO05D005655 1.8e-178 630.2 630 54.3
FAN27G1080 Fragaria x ananassa HOM05D004744 ORTHO05D005655 7.6e-177 624.8 633 53.1
Medtr3g106410 Medicago truncatula HOM05D004744 ORTHO05D005655 7.6e-177 624.8 629 53.6
Lalb_Chr08g0244261 Lupinus albus HOM05D004744 ORTHO05D005655 2.2e-176 623.2 626 54.0
AUR62012029 Chenopodium quinoa HOM05D004744 ORTHO05D005655 4.9e-176 622.1 592 55.7
RcHm_v2.0_Chr6g0297241 Rosa chinensis HOM05D004744 ORTHO05D005655 1.1e-175 620.9 631 53.7
AUR62015365 Chenopodium quinoa HOM05D004744 ORTHO05D005655 1.4e-175 620.5 597 54.8
Dinv18156 Davidia involucrata HOM05D004744 ORTHO05D005655 1.9e-175 620.2 525 62.5
C01p06880 Brassica napus HOM05D004744 ORTHO05D005655 2.7e-174 616.3 627 53.3
CANSAT01G0649 Cannabis sativa HOM05D004744 ORTHO05D005655 2.3e-173 613.2 629 53.6
BcaNung03134 Brassica carinata HOM05D004744 ORTHO05D005655 3.9e-173 612.5 625 53.6
Thhalv10024640m.g Eutrema salsugineum HOM05D004744 ORTHO05D005655 3.9e-173 612.5 641 51.6
arahy.Tifrunner.gnm1.ann1.8I84Z2 Arachis hypogaea HOM05D004744 ORTHO05D005655 6.7e-173 611.7 625 53.4
BcaC09g51994 Brassica carinata HOM05D004744 ORTHO05D005655 8.7e-173 611.3 627 53.0
BolC1t00685H Brassica oleracea HOM05D004744 ORTHO05D005655 8.7e-173 611.3 627 53.0
MELO3C016990.2 Cucumis melo HOM05D004744 ORTHO05D005655 8.7e-173 611.3 628 53.0
AL7G19840 Arabidopsis lyrata HOM05D004744 ORTHO05D005655 1.9e-172 610.1 624 53.4
BraA01t00591Z Brassica rapa HOM05D004744 ORTHO05D005655 1.9e-172 610.1 625 52.6
Aa31LG2G18030 Aethionema arabicum HOM05D004744 ORTHO05D005655 3.3e-172 609.4 619 53.8
A01p06240 Brassica napus HOM05D004744 ORTHO05D005655 3.3e-172 609.4 625 52.6
Haze_21464 Corylus avellana HOM05D004744 ORTHO05D005655 3.3e-172 609.4 656 53.0
TPR.G3127 Trifolium pratense HOM05D004744 ORTHO05D005655 5.7e-172 608.6 669 50.4
Cfa013106 Carpinus fangiana HOM05D004744 ORTHO05D005655 2.1e-171 606.7 574 57.0
Sed0024238 Sechium edule HOM05D004744 ORTHO05D005655 2.1e-171 606.7 629 53.1
vmacro11210 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 2.8e-171 606.3 513 62.4
vmacro11211 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 6.3e-171 605.1 513 62.2
CsaV3_4G036900 Cucumis sativus L. HOM05D004744 ORTHO05D005655 4.1e-170 602.4 628 52.2
arahy.Tifrunner.gnm1.ann1.LGG0U4 Arachis hypogaea HOM05D004744 ORTHO05D005655 9.0e-170 601.3 625 53.1
TWI32G0623 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 9.0e-170 601.3 587 55.9
Carub.0007s0850 Capsella rubella HOM05D004744 ORTHO05D005655 1.2e-169 600.9 624 52.7
CARHR239950 Cardamine hirsuta HOM05D004744 ORTHO05D005655 2.0e-169 600.1 625 52.6
Glyma.02G173300 Glycine max HOM05D004744 ORTHO05D005655 2.0e-169 600.1 626 53.2
Nitab4.5_0005958g0020 Nicotiana tabacum HOM05D004744 ORTHO05D005655 1.0e-168 597.8 569 56.8
Sp7g29850 Schrenkiella parvula HOM05D004744 ORTHO05D005655 1.7e-168 597.0 624 52.4
Glyma.02G001200 Glycine max HOM05D004744 ORTHO05D005655 5.0e-168 595.5 626 52.9
Manes.03G012200 Manihot esculenta HOM05D004744 ORTHO05D005655 9.3e-167 591.3 574 56.1
VMungo0720G0351 Vigna mungo HOM05D004744 ORTHO05D005655 3.5e-166 589.3 628 52.4
AT4G32050 Arabidopsis thaliana HOM05D004744 ORTHO05D005655 7.9e-166 588.2 624 52.6
CAN.G435.2 Capsicum annuum HOM05D004744 ORTHO05D005655 6.7e-165 585.1 557 58.2
EL10Ac3g06914 Beta vulgaris HOM05D004744 ORTHO05D005655 1.5e-164 583.9 630 50.8
Phvul.007G279700 Phaseolus vulgaris HOM05D004744 ORTHO05D005655 1.1e-162 577.8 644 50.9
DCAR_000582 Daucus carota HOM05D004744 ORTHO05D005655 9.0e-162 574.7 628 51.8
Sc20g0001320 Simmondsia chinensis HOM05D004744 ORTHO05D005655 2.2e-160 570.1 520 58.8
CDE05G1537 Ceratophyllum demersum HOM05D004744 ORTHO05D005655 3.2e-159 566.2 629 50.4
Eucgr.C01702 Eucalyptus grandis HOM05D004744 ORTHO05D005655 2.7e-158 563.1 535 55.5
Cpa.g.sc187.24 Carica papaya HOM05D004744 ORTHO05D005655 2.2e-155 553.5 629 51.8
ClCG05G016620 Citrullus lanatus HOM05D004744 ORTHO05D005655 3.1e-154 549.7 628 49.8
Prupe.1G485900 Prunus persica HOM05D004744 ORTHO05D005655 4.5e-153 545.8 574 53.3
Os02g0798700 Oryza sativa ssp. japonica HOM05D004744 ORTHO05D005655 2.3e-149 533.5 628 47.0
ATR0767G197 Amborella trichopoda HOM05D004744 ORTHO05D005655 3.0e-149 533.1 653 45.5
BcaC06g30946 Brassica carinata HOM05D004744 ORTHO05D005655 7.4e-148 528.5 625 49.0
Lj1g0024423 Lotus japonicus HOM05D004744 ORTHO05D005655 3.7e-147 526.2 629 48.6
HPP92_003269 Vanilla planifolia HOM05D004744 ORTHO05D005655 1.2e-145 521.2 636 48.0
Nn8g39704 Nelumbo nucifera HOM05D004744 ORTHO05D005655 1.6e-145 520.8 475 57.5
COL.COLO4_18910 Corchorus olitorius HOM05D004744 ORTHO05D005655 8.0e-142 508.4 442 61.3
Gohir.A06G099700 Gossypium hirsutum HOM05D004744 ORTHO05D005655 6.5e-136 488.8 470 58.1
RcHm_v2.0_Chr2g0139901 Rosa chinensis HOM05D004744 ORTHO05D005655 2.4e-130 470.3 601 47.6
Hund06750 Selenicereus undatus HOM05D004744 ORTHO05D005655 1.5e-127 461.1 658 41.3
TPR.G21279 Trifolium pratense HOM05D004744 ORTHO05D005655 2.0e-121 440.7 632 42.6
Peaxi162Scf00116g00091 Petunia axillaris HOM05D004744 ORTHO05D005655 1.4e-117 427.9 375 61.3
Eucgr.C01625 Eucalyptus grandis HOM05D004744 ORTHO05D005655 1.8e-114 417.5 399 54.9
unitig_0.g2772 Utricularia gibba HOM05D004744 ORTHO05D005655 3.0e-112 410.2 631 41.4
TPR.G21273 Trifolium pratense HOM05D004744 ORTHO05D005655 8.6e-112 408.7 593 43.0
Zm00001eb257970 Zea mays HOM05D004744 ORTHO05D005655 5.4e-106 389.4 481 46.8
Pp3c12_9830 Physcomitrium patens HOM05D004744 ORTHO05D005655 6.0e-81 306.2 640 30.5
Mapoly0033s0067 Marchantia polymorpha HOM05D004744 ORTHO05D005655 8.1e-78 295.8 618 31.2
TPR.G18367 Trifolium pratense HOM05D004744 ORTHO05D005655 6.9e-77 292.7 381 45.9
C07p37210 Brassica napus HOM05D004744 ORTHO05D005655 3.0e-72 277.3 530 37.0
BolC7t44231H Brassica oleracea HOM05D004744 ORTHO05D005655 3.0e-72 277.3 530 37.0
AagrBONN_evm.TU.Sc2ySwM_117.465 Anthoceros agrestis HOM05D004744 ORTHO05D005655 2.5e-71 274.2 511 34.2
vmacro12150 Vaccinium macrocarpon HOM05D000172 ORTHO05D000781 9.6e-71 272.3 374 45.5
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 2.8e-70 270.8 278 51.4
BcaC06g33762 Brassica carinata HOM05D004744 ORTHO05D005655 1.3e-64 251.9 381 41.2
SMO134G0198 Selaginella moellendorffii HOM05D004744 ORTHO05D005655 5.6e-63 246.5 626 29.4
BraA06t26993Z Brassica rapa HOM05D004744 ORTHO05D005655 2.5e-47 194.5 258 41.9
A06p40720 Brassica napus HOM05D004744 ORTHO05D005655 3.3e-47 194.1 258 41.9
Ah.14g079380 Amaranthus hybridus HOM05D004744 ORTHO05D005655 4.8e-38 163.7 186 46.2
PGSC0003DMG400015627 Solanum tuberosum HOM05D004744 ORTHO05D005655 4.8e-38 163.7 157 55.4
Ah.14g079390 Amaranthus hybridus HOM05D004744 ORTHO05D005655 3.4e-36 157.5 221 43.9
CBR_g34813 Chara braunii HOM05D004744 ORTHO05D005655 7.7e-36 156.4 381 28.3
DCAR_000575 Daucus carota HOM05D004744 ORTHO05D005655 1.7e-35 155.2 136 60.3
BolC8t47068H Brassica oleracea HOM05D004744 ORTHO05D005655 5.5e-34 150.2 164 49.4
C08p49950 Brassica napus HOM05D004744 ORTHO05D005655 4.7e-33 147.1 164 48.8
GSVIVG01011258001 Vitis vinifera HOM05D004744 ORTHO05D005655 1.0e-32 146.0 135 57.0
BcaC06g30944 Brassica carinata HOM05D004744 ORTHO05D005655 1.4e-32 145.6 166 47.6
DCAR_000580 Daucus carota HOM05D004744 ORTHO05D005655 2.3e-32 144.8 170 46.5
SEGI_40333 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 1.6e-28 132.1 144 50.7
BcaC07g41939 Brassica carinata HOM05D004744 ORTHO05D005655 1.3e-27 129.0 139 50.4
FAN14G1088 Fragaria x ananassa HOM05D004744 ORTHO05D005655 9.7e-23 112.8 402 27.1
Pp3c4_13414 Physcomitrium patens HOM05D004744 ORTHO05D005655 2.2e-22 111.7 330 27.3
FAN09G4690 Fragaria x ananassa HOM05D004744 ORTHO05D005655 5.3e-21 107.1 368 30.4
FvH4_6g32120 Fragaria vesca HOM05D004744 ORTHO05D005655 9.1e-21 106.3 266 33.5
DCAR_000578 Daucus carota HOM05D004744 ORTHO05D005655 1.7e-19 102.1 122 45.9
SHI18507 Sapria himalayana HOM05D004744 ORTHO05D005655 3.5e-12 77.8 99 44.4
unitig_748.g7861 Utricularia gibba HOM05D004744 ORTHO05D005655 4.5e-12 77.4 73 56.2
Cpa.g.sc187.23 Carica papaya HOM05D004744 ORTHO05D005655 5.9e-12 77.0 91 46.2
COL.COLO4_18909 Corchorus olitorius HOM05D004744 ORTHO05D005655 5.9e-12 77.0 83 47.0
SEGI_39231 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 7.7e-12 76.6 153 35.3
C08p02720 Brassica napus HOM05D004744 ORTHO05D005655 5.0e-11 73.9 72 51.4
Eucgr.L02780 Eucalyptus grandis HOM05D004744 ORTHO05D005655 1.8e-08 65.5 56 58.9
SHI18506 Sapria himalayana HOM05D004744 ORTHO05D005655 3.0e-08 64.7 55 58.2
TWI63G1552 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 6.8e-08 63.5 94 41.5
SEGI_08303 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 1.5e-07 62.4 70 42.9
Cre07.g323650 Chlamydomonas reinhardtii HOM05D004744 ORTHO05D005655 9.8e-07 59.7 113 34.5
CsaV3_4G016180 Cucumis sativus L. HOM05D004744 ORTHO05D005655 1.3e-06 59.3 43 58.1
unitig_60.g25872 Utricularia gibba HOM05D004744 ORTHO05D005655 2.2e-06 58.5 47 61.7
AUR62042108 Chenopodium quinoa HOM05D000216 ORTHO05D000634 8.3e-06 56.6 61 55.7
SEGI_21256 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 8.3e-06 56.6 75 41.3


User provided reference genes

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