Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g446720 Medicago truncatula HOM05D002851 ORTHO05D003084 7.6e-25 116.3 57 100.0
Medtr8g046180 Medicago truncatula HOM05D002851 ORTHO05D003084 4.3e-12 73.9 51 74.5
Psat6g101840 Pisum sativum HOM05D002851 ORTHO05D003084 1.3e-11 72.4 51 72.5
Ca_24177_v3 Cicer arietinum L. HOM05D002851 ORTHO05D003084 1.7e-11 72.0 51 72.5
Ca_24178_v3 Cicer arietinum L. HOM05D002851 ORTHO05D003084 1.7e-11 72.0 51 72.5
CAN.G1010.14 Capsicum annuum HOM05D002851 ORTHO05D003084 2.0e-09 65.1 33 87.9
Sed0010089 Sechium edule HOM05D002851 ORTHO05D003084 2.0e-09 65.1 34 82.4
Lj3g0007870 Lotus japonicus HOM05D002851 ORTHO05D003084 2.6e-09 64.7 51 62.7
Peaxi162Scf00078g01324 Petunia axillaris HOM05D002851 ORTHO05D003084 2.6e-09 64.7 54 63.0
Sopen10g014480 Solanum pennellii HOM05D002851 ORTHO05D003084 2.6e-09 64.7 51 62.7
PGSC0003DMG400028767 Solanum tuberosum HOM05D002851 ORTHO05D003084 2.6e-09 64.7 51 62.7
Eucgr.C00930 Eucalyptus grandis HOM05D002851 ORTHO05D003084 4.5e-09 63.9 42 76.2
Prupe.7G214800 Prunus persica HOM05D002851 ORTHO05D003084 4.5e-09 63.9 51 62.7
Solyc10g045310.2 Solanum lycopersicum HOM05D002851 ORTHO05D003084 4.5e-09 63.9 51 60.8
AUR62037484 Chenopodium quinoa HOM05D002851 ORTHO05D003084 5.9e-09 63.5 34 85.3
CsaV3_1G040120 Cucumis sativus L. HOM05D002851 ORTHO05D003084 5.9e-09 63.5 51 58.8
Hma1.2p1_1074F.1_g254330 Hydrangea macrophylla HOM05D002851 ORTHO05D003084 5.9e-09 63.5 51 60.8
CANSAT64G0550 Cannabis sativa HOM05D002851 ORTHO05D003084 7.7e-09 63.2 49 63.3
ClCG03G015860 Citrullus lanatus HOM05D002851 ORTHO05D003084 1.0e-08 62.8 51 58.8
MD15G1202400 Malus domestica HOM05D002851 ORTHO05D003084 1.0e-08 62.8 51 58.8
Glyma.08G230800 Glycine max HOM05D002851 ORTHO05D003084 1.3e-08 62.4 57 56.1
Cc06_g10950 Coffea canephora HOM05D002851 ORTHO05D003084 1.7e-08 62.0 51 58.8
COL.COLO4_18243 Corchorus olitorius HOM05D002851 ORTHO05D003084 1.7e-08 62.0 51 58.8
Rhsim03G0234800 Rhododendron simsii HOM05D002851 ORTHO05D003084 1.7e-08 62.0 33 81.8
vmacro06272 Vaccinium macrocarpon HOM05D002851 ORTHO05D003084 1.7e-08 62.0 33 81.8
Aa31LG2G21030 Aethionema arabicum HOM05D002851 ORTHO05D003084 2.2e-08 61.6 51 60.8
CSS0042934 Camellia sinensis var. sinensis HOM05D002851 ORTHO05D003084 2.2e-08 61.6 51 56.9
Eucgr.L03122 Eucalyptus grandis HOM05D002851 ORTHO05D003084 2.2e-08 61.6 34 79.4
BcaC09g51725 Brassica carinata HOM05D002851 ORTHO05D003084 2.9e-08 61.2 51 60.8
A01p08630 Brassica napus HOM05D002851 ORTHO05D003084 2.9e-08 61.2 51 60.8
C01p10100 Brassica napus HOM05D002851 ORTHO05D003084 2.9e-08 61.2 51 60.8
BolC1t00968H Brassica oleracea HOM05D002851 ORTHO05D003084 2.9e-08 61.2 51 60.8
BraA01t00813Z Brassica rapa HOM05D002851 ORTHO05D003084 2.9e-08 61.2 51 60.8
Glyma.09G078300 Glycine max HOM05D002851 ORTHO05D003084 2.9e-08 61.2 51 58.8
Sp7g27280 Schrenkiella parvula HOM05D002851 ORTHO05D003084 2.9e-08 61.2 51 60.8
FAN23G0939 Fragaria x ananassa HOM05D002851 ORTHO05D003084 3.8e-08 60.8 51 60.8
CSS0042051 Camellia sinensis var. sinensis HOM05D002851 ORTHO05D003084 5.0e-08 60.5 51 54.9
FvH4_1g06800 Fragaria vesca HOM05D002851 ORTHO05D003084 5.0e-08 60.5 51 60.8
FAN19G2701 Fragaria x ananassa HOM05D002851 ORTHO05D003084 5.0e-08 60.5 51 60.8
FAN26G0008 Fragaria x ananassa HOM05D002851 ORTHO05D003084 5.0e-08 60.5 52 57.7
FAN26G1704 Fragaria x ananassa HOM05D002851 ORTHO05D003084 5.0e-08 60.5 51 60.8
PGR142G3716 Punica granatum HOM05D002851 ORTHO05D003084 5.0e-08 60.5 51 56.9
Actinidia39749 Actinidia chinensis HOM05D002851 ORTHO05D003084 6.5e-08 60.1 51 56.9
Nitab4.5_0029443g0010 Nicotiana tabacum HOM05D002851 ORTHO05D003084 6.5e-08 60.1 33 75.8
RcHm_v2.0_Chr2g0091901 Rosa chinensis HOM05D002851 ORTHO05D003084 6.5e-08 60.1 51 60.8
RcHm_v2.0_Chr2g0092571 Rosa chinensis HOM05D002851 ORTHO05D003084 6.5e-08 60.1 51 60.8
Sabra14G0112000 Salix brachista HOM05D002851 ORTHO05D003084 6.5e-08 60.1 51 58.8
Thecc.09G094400 Theobroma cacao HOM05D002851 ORTHO05D003084 6.5e-08 60.1 51 56.9
EL10Ac7g15856 Beta vulgaris HOM05D002851 ORTHO05D003084 8.5e-08 59.7 34 82.4
EL10Ac7g15865 Beta vulgaris HOM05D002851 ORTHO05D003084 8.5e-08 59.7 34 82.4
AL7G23000 Arabidopsis lyrata HOM05D002851 ORTHO05D003084 1.1e-07 59.3 51 56.9
CiPaw.03G219900 Carya illinoinensis HOM05D002851 ORTHO05D003084 1.1e-07 59.3 51 54.9
TAR383G0978 Trochodendron aralioides HOM05D002851 ORTHO05D003084 1.1e-07 59.3 34 67.6
Ciclev10009026m.g Citrus clementina HOM05D002851 ORTHO05D003084 1.4e-07 58.9 51 58.8
Gohir.D08G265500 Gossypium hirsutum HOM05D002851 ORTHO05D003084 1.4e-07 58.9 51 54.9
Phvul.006G061200 Phaseolus vulgaris HOM05D002851 ORTHO05D003084 1.4e-07 58.9 51 56.9
Potri.014G148300 Populus trichocarpa HOM05D002851 ORTHO05D003084 1.4e-07 58.9 51 56.9
Sc18g0001770 Simmondsia chinensis HOM05D002851 ORTHO05D003084 1.4e-07 58.9 51 58.8
AT4G29400 Arabidopsis thaliana HOM05D002851 ORTHO05D003084 1.9e-07 58.5 51 56.9
CARHR237220 Cardamine hirsuta HOM05D002851 ORTHO05D003084 1.9e-07 58.5 51 56.9
Thhalv10025901m.g Eutrema salsugineum HOM05D002851 ORTHO05D003084 1.9e-07 58.5 51 56.9
Oeu039826.4 Olea europaea HOM05D002851 ORTHO05D003084 1.9e-07 58.5 33 72.7
HanXRQChr12g0355311 Helianthus annuus HOM05D002851 ORTHO05D003084 2.5e-07 58.2 33 75.8
MBI01_g16576_MAGBIO Magnolia biondii HOM05D002851 ORTHO05D003084 2.5e-07 58.2 32 71.9
QL02p063487 Quercus lobata HOM05D002851 ORTHO05D003084 2.5e-07 58.2 50 56.0
GSVIVG01015249001 Vitis vinifera HOM05D002851 ORTHO05D003084 2.5e-07 58.2 51 56.9
ECA234G3685 Erigeron canadensis HOM05D002851 ORTHO05D003084 3.2e-07 57.8 51 54.9
Lsat_1_v5_gn_5_146061 Lactuca sativa HOM05D002851 ORTHO05D003084 3.2e-07 57.8 33 75.8
Lalb_Chr19g0132441 Lupinus albus HOM05D002851 ORTHO05D003084 3.2e-07 57.8 51 56.9
Atru.chr7.1523 Acer truncatum HOM05D002851 ORTHO05D003084 4.2e-07 57.4 51 58.8
Carub.0007s1114 Capsella rubella HOM05D002851 ORTHO05D003084 4.2e-07 57.4 51 54.9
Nn8g38946 Nelumbo nucifera HOM05D002851 ORTHO05D003084 4.2e-07 57.4 51 54.9
Cfa003135 Carpinus fangiana HOM05D002851 ORTHO05D003084 5.5e-07 57.0 33 72.7
FAN28G1439 Fragaria x ananassa HOM05D002851 ORTHO05D003084 5.5e-07 57.0 51 58.8
Duzib187G0612 Durio zibethinus HOM05D002851 ORTHO05D003084 7.2e-07 56.6 51 54.9
Gorai.004G283500 Gossypium raimondii HOM05D002851 ORTHO05D003084 7.2e-07 56.6 51 52.9
Os01g0558800 Oryza sativa ssp. japonica HOM05D002851 ORTHO05D003084 7.2e-07 56.6 33 72.7
SalBow1G1827 Salvia bowleyana HOM05D002851 ORTHO05D003084 9.4e-07 56.2 51 54.9
SalBow1G2138 Salvia bowleyana HOM05D002851 ORTHO05D003084 9.4e-07 56.2 51 54.9
Ah.06g191610 Amaranthus hybridus HOM05D002851 ORTHO05D003084 1.2e-06 55.8 34 76.5
THA.LOC104803991 Tarenaya hassleriana HOM05D002851 ORTHO05D003084 1.2e-06 55.8 51 52.9
Aqoxy7G03927 Aquilegia oxysepala HOM05D002851 ORTHO05D003084 1.6e-06 55.5 51 54.9
MSTRG.10584 Avicennia marina HOM05D002851 ORTHO05D003084 2.1e-06 55.1 51 49.0
PSO210G0738 Papaver somniferum HOM05D002851 ORTHO05D003084 2.1e-06 55.1 33 72.7
PSO210G6301 Papaver somniferum HOM05D002851 ORTHO05D003084 2.1e-06 55.1 33 72.7
SGA_v2.0_scaffold2G00995 Striga asiatica HOM05D002851 ORTHO05D003084 2.7e-06 54.7 38 68.4
unitig_8.g4696 Utricularia gibba HOM05D002851 ORTHO05D003084 2.7e-06 54.7 34 64.7
ATR0789G028 Amborella trichopoda HOM05D002851 ORTHO05D003084 4.7e-06 53.9 49 51.0
DCAR_028629 Daucus carota HOM05D002851 ORTHO05D003084 4.7e-06 53.9 28 78.6
arahy.Tifrunner.gnm1.ann1.8C5UM8 Arachis hypogaea HOM05D002851 ORTHO05D003084 7.9e-06 53.1 44 59.1
Cpa.g.sc3389.1 Carica papaya HOM05D002851 ORTHO05D003084 7.9e-06 53.1 51 47.1
Manes.16G105200 Manihot esculenta HOM05D002851 ORTHO05D003084 7.9e-06 53.1 51 49.0


User provided reference genes

Program Settings