Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g446540 Medicago truncatula HOM05D001617 ORTHO05D008611 1.6e-115 419.5 213 100.0
TPR.G24692 Trifolium pratense HOM05D001617 ORTHO05D008611 2.2e-69 266.2 152 89.5
TPR.G27884 Trifolium pratense HOM05D001617 ORTHO05D008611 6.5e-69 264.6 153 89.5
Ca_24984_v3 Cicer arietinum L. HOM05D001617 ORTHO05D008611 4.3e-65 251.9 152 84.2
Psat4g142640 Pisum sativum HOM05D001617 ORTHO05D008611 9.1e-63 244.2 152 80.9
Glyma.01G158500 Glycine max HOM05D001617 ORTHO05D008611 5.5e-60 235.0 168 72.6
Medtr7g006210 Medicago truncatula HOM05D001617 ORTHO05D008611 1.5e-57 226.9 145 80.0
Glyma.11G086100 Glycine max HOM05D001617 ORTHO05D008611 7.4e-57 224.6 152 77.6
arahy.Tifrunner.gnm1.ann1.00REGV Arachis hypogaea HOM05D001617 ORTHO05D008611 1.7e-56 223.4 153 72.5
arahy.Tifrunner.gnm1.ann1.P3NXZX Arachis hypogaea HOM05D001617 ORTHO05D008611 1.7e-56 223.4 153 72.5
Lalb_Chr05g0214811 Lupinus albus HOM05D001617 ORTHO05D008611 1.7e-56 223.4 152 77.0
Lalb_Chr16g0380051 Lupinus albus HOM05D001617 ORTHO05D008611 1.7e-56 223.4 159 73.6
Lj2g0016890 Lotus japonicus HOM05D001617 ORTHO05D008611 6.3e-56 221.5 152 77.0
Phvul.002G116800 Phaseolus vulgaris HOM05D001617 ORTHO05D008611 1.1e-55 220.7 152 72.4
MD02G1114800 Malus domestica HOM05D001617 ORTHO05D008611 2.7e-46 189.5 152 61.2
Prupe.7G183400 Prunus persica HOM05D001617 ORTHO05D008611 5.9e-46 188.3 148 64.9
Potri.018G026700 Populus trichocarpa HOM05D001617 ORTHO05D008611 1.0e-45 187.6 152 59.2
Haze_03607 Corylus avellana HOM05D001617 ORTHO05D008611 2.9e-45 186.0 152 59.9
MD15G1230700 Malus domestica HOM05D001617 ORTHO05D008611 4.2e-44 182.2 148 62.8
QL06p053003 Quercus lobata HOM05D001617 ORTHO05D008611 7.2e-44 181.4 153 62.1
Dinv40191 Davidia involucrata HOM05D001617 ORTHO05D008611 4.4e-41 172.2 153 59.5
RcHm_v2.0_Chr2g0097101 Rosa chinensis HOM05D001617 ORTHO05D008611 1.3e-40 170.6 152 57.9
FAN19G1097 Fragaria x ananassa HOM05D001617 ORTHO05D002495 3.7e-40 169.1 152 56.6
FvH4_1g10271 Fragaria vesca HOM05D001617 ORTHO05D008611 6.3e-40 168.3 152 56.6
CSS0049801 Camellia sinensis var. sinensis HOM05D001617 ORTHO05D008611 2.4e-39 166.4 151 57.0
Sabra06G0199600 Salix brachista HOM05D001617 ORTHO05D008611 2.7e-38 162.9 153 53.6
CSS0040657 Camellia sinensis var. sinensis HOM05D001617 ORTHO05D008611 3.5e-38 162.5 151 57.0
Atru.chr3.130 Acer truncatum HOM05D001617 ORTHO05D008611 5.9e-38 161.8 152 51.3
Manes.03G014200 Manihot esculenta HOM05D001617 ORTHO05D008611 7.7e-38 161.4 152 53.3
Actinidia17356 Actinidia chinensis HOM05D001617 ORTHO05D008611 1.0e-37 161.0 171 52.0
Actinidia22895 Actinidia chinensis HOM05D001617 ORTHO05D008611 1.1e-36 157.5 148 54.7
CiPaw.08G181900 Carya illinoinensis HOM05D001617 ORTHO05D008611 1.1e-36 157.5 152 53.3
Hma1.2p1_0300F.1_g117970 Hydrangea macrophylla HOM05D001617 ORTHO05D008611 3.2e-36 156.0 151 57.0
Sc07g0001380 Simmondsia chinensis HOM05D001617 ORTHO05D008611 3.2e-36 156.0 153 52.9
Nn5g30995 Nelumbo nucifera HOM05D001617 ORTHO05D008611 1.2e-35 154.1 153 56.2
TAR625G0652 Trochodendron aralioides HOM05D001617 ORTHO05D008611 1.2e-35 154.1 153 55.6
Thecc.01G005100 Theobroma cacao HOM05D001617 ORTHO05D008611 2.3e-34 149.8 152 53.3
Ciclev10026581m.g Citrus clementina HOM05D001617 ORTHO05D008611 3.0e-34 149.4 147 49.0
Eucgr.I02221 Eucalyptus grandis HOM05D001617 ORTHO05D008611 3.0e-34 149.4 152 52.0
HanXRQChr03g0061381 Helianthus annuus HOM05D001617 ORTHO05D008611 3.0e-34 149.4 147 53.7
Lsat_1_v5_gn_7_41980 Lactuca sativa HOM05D001617 ORTHO05D008611 5.2e-34 148.7 156 53.2
VMungo1215G1547 Vigna mungo HOM05D004017 ORTHO05D004612 5.2e-34 148.7 93 81.7
Lj2g0001157 Lotus japonicus HOM05D001617 ORTHO05D008611 1.2e-33 147.5 152 55.9
Duzib147G0359 Durio zibethinus HOM05D001617 ORTHO05D008611 2.0e-33 146.7 154 51.9
Sed0024019 Sechium edule HOM05D001617 ORTHO05D008611 2.0e-33 146.7 156 51.9
FAN23G1150 Fragaria x ananassa HOM05D001617 ORTHO05D002495 2.6e-33 146.4 188 45.2
Rhsim10G0195300 Rhododendron simsii HOM05D001617 ORTHO05D008611 5.7e-33 145.2 153 51.6
AUR62003746 Chenopodium quinoa HOM05D001617 ORTHO05D008611 2.2e-32 143.3 153 46.4
Nitab4.5_0000467g0050 Nicotiana tabacum HOM05D001617 ORTHO05D008611 3.7e-32 142.5 158 49.4
ECA240G2496 Erigeron canadensis HOM05D001617 ORTHO05D008611 6.3e-32 141.7 167 49.7
PSO761G0409 Papaver somniferum HOM05D001617 ORTHO05D008611 1.4e-31 140.6 153 49.0
CsaV3_3G000210 Cucumis sativus L. HOM05D001617 ORTHO05D008611 1.8e-31 140.2 153 51.6
PSO210G2591 Papaver somniferum HOM05D001617 ORTHO05D008611 1.8e-31 140.2 153 50.3
Solyc02g038814.1 Solanum lycopersicum HOM05D001617 ORTHO05D008611 1.8e-31 140.2 149 50.3
Sopen02g012580 Solanum pennellii HOM05D001617 ORTHO05D008611 1.8e-31 140.2 149 50.3
PGR119G0287 Punica granatum HOM05D001617 ORTHO05D008611 3.1e-31 139.4 145 51.7
Thhalv10026286m.g Eutrema salsugineum HOM05D001617 ORTHO05D008611 2.0e-30 136.7 163 46.6
Aqoxy6G01611 Aquilegia oxysepala HOM05D001617 ORTHO05D008611 2.7e-30 136.3 144 48.6
AL7G15630 Arabidopsis lyrata HOM05D001617 ORTHO05D008611 4.5e-30 135.6 163 46.6
Carub.0007s0479 Capsella rubella HOM05D001617 ORTHO05D008611 4.5e-30 135.6 163 46.6
AUR62002049 Chenopodium quinoa HOM05D001617 ORTHO05D008611 7.7e-30 134.8 153 45.1
Nitab4.5_0001365g0060 Nicotiana tabacum HOM05D001617 ORTHO05D008611 1.7e-29 133.7 154 48.7
THA.LOC104819716 Tarenaya hassleriana HOM05D001617 ORTHO05D008611 1.7e-29 133.7 156 45.5
Potri.006G255301 Populus trichocarpa HOM05D001617 ORTHO05D008611 2.3e-29 133.3 153 46.4
ATR0807G073 Amborella trichopoda HOM05D001617 ORTHO05D008611 3.8e-29 132.5 155 49.0
TWI09G0535 Tripterygium wilfordii HOM05D001617 ORTHO05D008611 3.8e-29 132.5 146 50.0
GSVIVG01013391001 Vitis vinifera HOM05D001617 ORTHO05D008611 3.8e-29 132.5 153 47.7
Aa31LG6G12490 Aethionema arabicum HOM05D001617 ORTHO05D008611 8.6e-29 131.3 155 45.2
AT4G35530 Arabidopsis thaliana HOM05D001617 ORTHO05D008611 8.6e-29 131.3 163 44.2
SalBow8G0576 Salvia bowleyana HOM05D001617 ORTHO05D008611 8.6e-29 131.3 166 47.6
A01p03080 Brassica napus HOM05D001617 ORTHO05D008611 1.5e-28 130.6 157 43.3
Migut.H02499 Erythranthe guttata HOM05D001617 ORTHO05D008611 1.5e-28 130.6 157 46.5
QL02p015100 Quercus lobata HOM05D001617 ORTHO05D008611 1.9e-28 130.2 152 45.4
C07p61220 Brassica napus HOM05D001617 ORTHO05D008611 2.5e-28 129.8 157 44.6
BolC7t46548H Brassica oleracea HOM05D001617 ORTHO05D008611 2.5e-28 129.8 157 44.6
BraA01t00292Z Brassica rapa HOM05D001617 ORTHO05D008611 4.3e-28 129.0 157 42.7
Peaxi162Scf00580g00110 Petunia axillaris HOM05D001617 ORTHO05D008611 5.6e-28 128.6 149 48.3
Sp7g33310 Schrenkiella parvula HOM05D001617 ORTHO05D008611 9.5e-28 127.9 161 43.5
A03p63650 Brassica napus HOM05D001617 ORTHO05D008611 4.7e-27 125.6 155 45.2
BraA03t15436Z Brassica rapa HOM05D001617 ORTHO05D008611 4.7e-27 125.6 155 45.2
Gorai.003G002100 Gossypium raimondii HOM05D001617 ORTHO05D008611 1.5e-25 120.6 142 50.7
BcaNung03634 Brassica carinata HOM05D001617 ORTHO05D008611 2.6e-25 119.8 153 43.1
Gohir.A02G178000 Gossypium hirsutum HOM05D001617 ORTHO05D008611 3.4e-25 119.4 142 49.3
Gohir.D03G001800 Gossypium hirsutum HOM05D001617 ORTHO05D008611 3.4e-25 119.4 142 50.7
Cc07_g11900 Coffea canephora HOM05D001617 ORTHO05D008611 4.4e-25 119.0 148 46.6
CDE05G1602 Ceratophyllum demersum HOM05D001617 ORTHO05D008611 7.5e-25 118.2 147 44.2
PGSC0003DMG400017488 Solanum tuberosum HOM05D001617 ORTHO05D008611 9.8e-25 117.9 171 43.3
Os05g0165400 Oryza sativa ssp. japonica HOM05D001617 ORTHO05D008611 2.2e-24 116.7 147 47.6
QL02p015033 Quercus lobata HOM05D001617 ORTHO05D008611 2.9e-24 116.3 162 43.2
SGA_v2.0_scaffold280G46856 Striga asiatica HOM05D001617 ORTHO05D008611 2.4e-23 113.2 165 43.6
TWI73G0916 Tripterygium wilfordii HOM05D001617 ORTHO05D008611 5.4e-23 112.1 153 45.1
BcaNung00584 Brassica carinata HOM05D001617 ORTHO05D008611 2.0e-22 110.2 136 45.6
CANSAT25G0226 Cannabis sativa HOM05D001617 ORTHO05D008611 3.5e-22 109.4 158 43.7
HPP92_001135 Vanilla planifolia HOM05D001617 ORTHO05D008611 5.9e-22 108.6 147 42.2
CARHR243860 Cardamine hirsuta HOM05D001617 ORTHO05D008611 1.3e-21 107.5 78 62.8
MELO3C013716.2 Cucumis melo HOM05D001617 ORTHO05D008611 1.3e-21 107.5 65 76.9
ClCG10G000190 Citrullus lanatus HOM05D001617 ORTHO05D008611 2.3e-21 106.7 170 40.0
Zm00001eb123330 Zea mays HOM05D001617 ORTHO05D008611 3.9e-21 105.9 153 43.8
Manes.03G014750 Manihot esculenta HOM05D001617 ORTHO05D008611 9.5e-20 101.3 152 42.1
COL.COLO4_22553 Corchorus olitorius HOM05D001617 ORTHO05D008611 2.8e-19 99.8 152 40.8
Haze_22828 Corylus avellana HOM05D006218 ORTHO05D007338 1.8e-18 97.1 67 67.2
SEGI_30027 Sequoiadendron giganteum HOM05D001617 ORTHO05D008611 2.3e-18 96.7 158 34.8
Hund03599 Selenicereus undatus HOM05D001617 ORTHO05D008611 8.9e-18 94.7 154 38.3
C01p03430 Brassica napus HOM05D001617 ORTHO05D008611 1.2e-17 94.4 156 39.1
BolC1t00330H Brassica oleracea HOM05D001617 ORTHO05D008611 1.2e-17 94.4 156 39.1
EL10Ac6g15051 Beta vulgaris HOM05D001617 ORTHO05D008611 8.3e-16 88.2 197 32.0
SEGI_12529 Sequoiadendron giganteum HOM05D001617 ORTHO05D008611 4.1e-15 85.9 101 45.5
arahy.Tifrunner.gnm1.ann1.JF0LYH Arachis hypogaea HOM05D001617 ORTHO05D008611 2.0e-14 83.6 60 70.0
FAN26G0309 Fragaria x ananassa HOM05D001617 ORTHO05D002495 4.6e-14 82.4 55 72.7
Mapoly0064s0006 Marchantia polymorpha HOM05D001617 ORTHO05D008611 1.0e-13 81.3 106 45.3
Medtr7g005770 Medicago truncatula HOM05D001617 ORTHO05D008611 1.3e-13 80.9 46 82.6
unitig_46.g18791 Utricularia gibba HOM05D001617 ORTHO05D008611 2.5e-12 76.6 149 37.6
SHI18558 Sapria himalayana HOM05D000291 ORTHO05D001358 4.0e-10 69.3 145 37.2
TAR381G0965 Trochodendron aralioides HOM05D001617 ORTHO05D008611 5.2e-10 68.9 74 54.1
Pp3c25_310 Physcomitrium patens HOM05D001617 ORTHO05D008611 6.8e-10 68.6 142 34.5
AagrBONN_evm.TU.Sc2ySwM_368.1506 Anthoceros agrestis HOM05D001617 ORTHO05D008611 1.5e-09 67.4 85 42.4
Os01g0166400 Oryza sativa ssp. japonica HOM05D001617 ORTHO05D008611 1.1e-07 61.2 53 54.7
CBR_g38242 Chara braunii HOM05D001617 ORTHO05D008611 3.5e-06 56.2 74 39.2


User provided reference genes

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