Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g445330 Medicago truncatula HOM05D000596 ORTHO05D015699 3.0e-69 265.0 128 100.0
Medtr1g050430 Medicago truncatula HOM05D000596 ORTHO05D015699 1.6e-46 189.5 103 90.3
Medtr0534s0030 Medicago truncatula HOM05D000596 ORTHO05D015699 1.3e-45 186.4 100 91.0
Medtr5g030050 Medicago truncatula HOM05D000596 ORTHO05D002115 3.7e-35 151.8 90 81.1
Medtr7g094970 Medicago truncatula HOM05D000596 ORTHO05D002115 5.9e-33 144.4 90 78.9
TPR.G9922 Trifolium pratense HOM05D000596 ORTHO05D002115 4.4e-28 128.3 90 68.9
Psat0s4437g0080 Pisum sativum HOM05D000596 ORTHO05D002115 1.8e-26 122.9 90 70.0
Medtr2g067110 Medicago truncatula HOM05D000596 ORTHO05D015699 2.9e-24 115.5 63 90.5
Phvul.001G151900 Phaseolus vulgaris HOM05D000596 ORTHO05D002115 7.2e-23 110.9 92 58.7
Lalb_Chr20g0107791 Lupinus albus HOM05D000596 ORTHO05D002115 1.8e-21 106.3 90 57.8
Glyma.03G154400 Glycine max HOM05D000596 ORTHO05D002115 1.3e-19 100.1 92 56.5
VMungo1383G1529 Vigna mungo HOM05D000596 ORTHO05D002115 4.8e-19 98.2 82 59.8
arahy.Tifrunner.gnm1.ann1.KA44CE Arachis hypogaea HOM05D000596 ORTHO05D002115 1.4e-18 96.7 90 52.2
arahy.Tifrunner.gnm1.ann1.C5WNZ8 Arachis hypogaea HOM05D000596 ORTHO05D002115 3.5e-17 92.0 88 52.3
Medtr0599s0010 Medicago truncatula HOM05D000596 ORTHO05D015699 2.2e-16 89.4 52 84.6
Medtr3g034810 Medicago truncatula HOM05D000596 ORTHO05D015699 6.1e-14 81.3 48 83.3
arahy.Tifrunner.gnm1.ann1.HNK79X Arachis hypogaea HOM05D000596 ORTHO05D002115 8.0e-14 80.9 91 42.9
FvH4_2g23440 Fragaria vesca HOM05D000596 ORTHO05D002115 8.0e-14 80.9 103 46.6
FAN24G1867 Fragaria x ananassa HOM05D000596 ORTHO05D002115 8.0e-14 80.9 103 46.6
MD11G1208700 Malus domestica HOM05D000596 ORTHO05D002115 5.2e-13 78.2 82 48.8
Medtr7g011770 Medicago truncatula HOM05D000596 ORTHO05D002115 5.2e-13 78.2 91 46.2
FAN15G2104 Fragaria x ananassa HOM05D000596 ORTHO05D002115 8.8e-13 77.4 103 44.7
Prupe.8G239900 Prunus persica HOM05D000596 ORTHO05D002115 1.2e-12 77.0 82 48.8
FAN27G1990 Fragaria x ananassa HOM05D000596 ORTHO05D002115 1.5e-12 76.6 103 44.7
FAN20G2085 Fragaria x ananassa HOM05D000596 ORTHO05D002115 2.0e-12 76.3 103 43.7
Lj1g0023177 Lotus japonicus HOM05D000596 ORTHO05D002115 2.0e-12 76.3 76 50.0
CiPaw.07G091000 Carya illinoinensis HOM05D000596 ORTHO05D002115 3.4e-12 75.5 95 38.9
Glyma.03G154700 Glycine max HOM05D000596 ORTHO05D002115 3.4e-12 75.5 76 46.1
Psat3g199080 Pisum sativum HOM05D000596 ORTHO05D002115 3.4e-12 75.5 93 45.2
MD03G1263500 Malus domestica HOM05D000596 ORTHO05D002115 4.4e-12 75.1 81 46.9
RcHm_v2.0_Chr6g0290941 Rosa chinensis HOM05D000596 ORTHO05D002115 5.7e-12 74.7 109 40.4
Haze_04697 Corylus avellana HOM05D000596 ORTHO05D002115 7.5e-12 74.3 66 51.5
Thecc.01G277500 Theobroma cacao HOM05D000596 ORTHO05D002115 7.5e-12 74.3 97 41.2
Haze_04698 Corylus avellana HOM05D000596 ORTHO05D002115 9.8e-12 73.9 66 51.5
GSVIVG01001153001 Vitis vinifera HOM05D000596 ORTHO05D002115 9.8e-12 73.9 97 42.3
MD11G1284300 Malus domestica HOM05D000596 ORTHO05D002115 1.3e-11 73.6 82 46.3
TAR636G1765 Trochodendron aralioides HOM05D000596 ORTHO05D002115 1.3e-11 73.6 73 47.9
TPR.G660 Trifolium pratense HOM05D000596 ORTHO05D015699 1.7e-11 73.2 70 51.4
Medtr7g011663 Medicago truncatula HOM05D000596 ORTHO05D002115 2.2e-11 72.8 70 48.6
Lj1g0018989 Lotus japonicus HOM05D000596 ORTHO05D002115 2.8e-11 72.4 76 47.4
Lalb_Chr20g0107801 Lupinus albus HOM05D000596 ORTHO05D002115 2.8e-11 72.4 68 54.4
Glyma.19G157000 Glycine max HOM05D000596 ORTHO05D002115 3.7e-11 72.0 76 46.1
SHI25379 Sapria himalayana HOM05D000596 ORTHO05D015699 3.7e-11 72.0 76 46.1
VMungo1383G0895 Vigna mungo HOM05D000596 ORTHO05D002115 3.7e-11 72.0 76 46.1
Glyma.19G156800 Glycine max HOM05D000596 ORTHO05D002115 4.8e-11 71.6 76 50.0
Duzib138G1316 Durio zibethinus HOM05D000596 ORTHO05D002115 6.3e-11 71.2 98 39.8
RcHm_v2.0_Chr6g0290871 Rosa chinensis HOM05D000596 ORTHO05D002115 6.3e-11 71.2 69 52.2
TPR.G126 Trifolium pratense HOM05D000596 ORTHO05D002115 6.3e-11 71.2 70 50.0
vmacro16912 Vaccinium macrocarpon HOM05D000596 ORTHO05D002115 8.3e-11 70.9 72 45.8
Potri.002G052100 Populus trichocarpa HOM05D000596 ORTHO05D002115 1.1e-10 70.5 102 36.3
arahy.Tifrunner.gnm1.ann1.YAY0HW Arachis hypogaea HOM05D000596 ORTHO05D002115 1.4e-10 70.1 71 49.3
Sabra02G0042200 Salix brachista HOM05D000596 ORTHO05D002115 1.4e-10 70.1 102 36.3
Sabra05G0160400 Salix brachista HOM05D000596 ORTHO05D002115 1.4e-10 70.1 102 38.2
arahy.Tifrunner.gnm1.ann1.PN0N9Z Arachis hypogaea HOM05D000596 ORTHO05D002115 1.8e-10 69.7 71 49.3
CiPaw.08G105500 Carya illinoinensis HOM05D000596 ORTHO05D002115 1.8e-10 69.7 75 45.3
COL.COLO4_09082 Corchorus olitorius HOM05D000596 ORTHO05D002115 1.8e-10 69.7 109 36.7
Manes.01G207300 Manihot esculenta HOM05D000596 ORTHO05D002115 1.8e-10 69.7 65 53.8
Potri.005G210300 Populus trichocarpa HOM05D000596 ORTHO05D002115 2.4e-10 69.3 102 38.2
Rhsim13G0025800 Rhododendron simsii HOM05D000596 ORTHO05D002115 2.4e-10 69.3 70 47.1
Ciclev10023706m.g Citrus clementina HOM05D000596 ORTHO05D002115 3.1e-10 68.9 74 43.2
Dinv32926 Davidia involucrata HOM05D000596 ORTHO05D002115 3.1e-10 68.9 106 37.7
QL12p021436 Quercus lobata HOM05D000596 ORTHO05D002115 3.1e-10 68.9 66 43.9
FAN15G1090 Fragaria x ananassa HOM05D000596 ORTHO05D002115 4.1e-10 68.6 69 50.7
Phvul.001G152100 Phaseolus vulgaris HOM05D000596 ORTHO05D002115 4.1e-10 68.6 76 42.1
TAR365G1007 Trochodendron aralioides HOM05D000596 ORTHO05D002115 4.1e-10 68.6 102 37.3
DCAR_012483 Daucus carota HOM05D000596 ORTHO05D002115 5.4e-10 68.2 108 39.8
Gohir.D11G128500 Gossypium hirsutum HOM05D000596 ORTHO05D002115 5.4e-10 68.2 107 34.6
Gorai.007G137400 Gossypium raimondii HOM05D000596 ORTHO05D002115 5.4e-10 68.2 107 34.6
Ciclev10018875m.g Citrus clementina HOM05D000596 ORTHO05D002115 7.0e-10 67.8 104 37.5
Cc08_g07530 Coffea canephora HOM05D000596 ORTHO05D002115 7.0e-10 67.8 93 41.9
FAN24G1705 Fragaria x ananassa HOM05D000596 ORTHO05D002115 7.0e-10 67.8 69 50.7
FvH4_2g23400 Fragaria vesca HOM05D000596 ORTHO05D002115 9.1e-10 67.4 69 50.7
Gohir.A08G066500 Gossypium hirsutum HOM05D000596 ORTHO05D002115 9.1e-10 67.4 110 36.4
Manes.05G077200 Manihot esculenta HOM05D000596 ORTHO05D002115 9.1e-10 67.4 70 48.6
vmacro14647 Vaccinium macrocarpon HOM05D000596 ORTHO05D002115 9.1e-10 67.4 98 40.8
CANSAT25G3448 Cannabis sativa HOM05D000596 ORTHO05D002115 1.2e-09 67.0 72 44.4
Duzib211G0501 Durio zibethinus HOM05D000596 ORTHO05D002115 1.2e-09 67.0 99 40.4
FAN24G2252 Fragaria x ananassa HOM05D000596 ORTHO05D002115 1.2e-09 67.0 70 48.6
vmacro02578 Vaccinium macrocarpon HOM05D000596 ORTHO05D002115 1.2e-09 67.0 89 42.7
MSTRG.12561 Avicennia marina HOM05D000596 ORTHO05D002115 1.6e-09 66.6 61 54.1
Migut.D00306 Erythranthe guttata HOM05D000596 ORTHO05D002115 1.6e-09 66.6 96 39.6
Nn4g26282 Nelumbo nucifera HOM05D000596 ORTHO05D002115 1.6e-09 66.6 94 40.4
TWI38G0375 Tripterygium wilfordii HOM05D000596 ORTHO05D002115 1.6e-09 66.6 100 40.0
TWI38G1945 Tripterygium wilfordii HOM05D000596 ORTHO05D002115 1.6e-09 66.6 100 40.0
GSVIVG01001155001 Vitis vinifera HOM05D000596 ORTHO05D002115 1.6e-09 66.6 103 40.8
AUR62040183 Chenopodium quinoa HOM05D000596 ORTHO05D002115 2.0e-09 66.2 96 38.5
ClCG07G000310 Citrullus lanatus HOM05D000596 ORTHO05D002115 2.0e-09 66.2 90 35.6
FAN15G2683 Fragaria x ananassa HOM05D000596 ORTHO05D002115 2.0e-09 66.2 70 48.6
AUR62044071 Chenopodium quinoa HOM05D000596 ORTHO05D002115 2.7e-09 65.9 78 42.3
FvH4_2g22720 Fragaria vesca HOM05D000596 ORTHO05D002115 2.7e-09 65.9 70 47.1
Gorai.004G079500 Gossypium raimondii HOM05D000596 ORTHO05D002115 2.7e-09 65.9 105 38.1
TWI59G1004 Tripterygium wilfordii HOM05D000596 ORTHO05D002115 2.7e-09 65.9 69 47.8
Dinv34762 Davidia involucrata HOM05D000596 ORTHO05D002115 3.5e-09 65.5 98 36.7
Duzib133G0476 Durio zibethinus HOM05D000596 ORTHO05D002115 3.5e-09 65.5 81 40.7
vmacro02579 Vaccinium macrocarpon HOM05D000596 ORTHO05D002115 3.5e-09 65.5 72 43.1
FvH4_2g23420 Fragaria vesca HOM05D000596 ORTHO05D002115 4.5e-09 65.1 65 52.3
Gohir.D08G075200 Gossypium hirsutum HOM05D000596 ORTHO05D002115 4.5e-09 65.1 107 37.4
Hund20413 Selenicereus undatus HOM05D000596 ORTHO05D002115 4.5e-09 65.1 93 43.0
arahy.Tifrunner.gnm1.ann1.L13Y3X Arachis hypogaea HOM05D000596 ORTHO05D002115 5.9e-09 64.7 58 53.4
Cpa.g.sc52.43 Carica papaya HOM05D000596 ORTHO05D002115 5.9e-09 64.7 109 33.9
Cc01_g19400 Coffea canephora HOM05D000596 ORTHO05D002115 5.9e-09 64.7 58 51.7
Gohir.A11G123300 Gossypium hirsutum HOM05D000596 ORTHO05D002115 7.7e-09 64.3 107 33.6
vmacro02580 Vaccinium macrocarpon HOM05D000596 ORTHO05D002115 7.7e-09 64.3 72 43.1
vmacro14917 Vaccinium macrocarpon HOM05D000596 ORTHO05D002115 7.7e-09 64.3 62 53.2
Actinidia21117 Actinidia chinensis HOM05D000596 ORTHO05D002115 1.0e-08 63.9 97 39.2
CSS0018744 Camellia sinensis var. sinensis HOM05D000596 ORTHO05D002115 1.0e-08 63.9 82 39.0
MELO3C014392.2 Cucumis melo HOM05D000596 ORTHO05D002115 1.0e-08 63.9 88 35.2
CsaV3_6G037230 Cucumis sativus L. HOM05D000596 ORTHO05D002115 1.3e-08 63.5 66 43.9
Oeu018181.1 Olea europaea HOM05D000596 ORTHO05D002115 1.3e-08 63.5 70 44.3
TAR362G0849 Trochodendron aralioides HOM05D000596 ORTHO05D002115 1.3e-08 63.5 71 45.1
Migut.N02050 Erythranthe guttata HOM05D000596 ORTHO05D002115 1.7e-08 63.2 80 38.8
Migut.N02048 Erythranthe guttata HOM05D000596 ORTHO05D002115 2.2e-08 62.8 80 37.5
Peaxi162Scf00783g00226 Petunia axillaris HOM05D000596 ORTHO05D002115 2.2e-08 62.8 111 34.2
TWI59G1243 Tripterygium wilfordii HOM05D000596 ORTHO05D002115 2.2e-08 62.8 64 48.4
FAN27G0621 Fragaria x ananassa HOM05D000596 ORTHO05D025538 2.9e-08 62.4 69 47.8
Medtr0042s0040 Medicago truncatula HOM05D000596 ORTHO05D015699 2.9e-08 62.4 34 88.2
FvH4_3g14111 Fragaria vesca HOM05D000596 ORTHO05D002115 3.8e-08 62.0 62 48.4
PGR119G1085 Punica granatum HOM05D000596 ORTHO05D002115 5.0e-08 61.6 69 46.4
Actinidia24898 Actinidia chinensis HOM05D000596 ORTHO05D002115 6.5e-08 61.2 83 39.8
EL10Ac7g16724 Beta vulgaris HOM05D000596 ORTHO05D002115 6.5e-08 61.2 65 47.7
DCAR_019490 Daucus carota HOM05D000596 ORTHO05D002115 8.5e-08 60.8 67 44.8
Migut.N02049 Erythranthe guttata HOM05D000596 ORTHO05D002115 8.5e-08 60.8 80 37.5
Hma1.2p1_1739F.1_g300010 Hydrangea macrophylla HOM05D000596 ORTHO05D002115 1.1e-07 60.5 71 43.7
Sc24g0002780 Simmondsia chinensis HOM05D000596 ORTHO05D002115 1.1e-07 60.5 68 45.6
TWI59G0068 Tripterygium wilfordii HOM05D000596 ORTHO05D002115 1.9e-07 59.7 64 45.3
Atru.chr5.1453 Acer truncatum HOM05D000596 ORTHO05D002115 2.5e-07 59.3 79 38.0
Aqoxy1G03940 Aquilegia oxysepala HOM05D000596 ORTHO05D002115 2.5e-07 59.3 76 42.1
CAN.G1549.6 Capsicum annuum HOM05D000596 ORTHO05D002115 2.5e-07 59.3 107 29.9
CARHR251150 Cardamine hirsuta HOM05D000596 ORTHO05D002115 2.5e-07 59.3 107 30.8
Cfa006150 Carpinus fangiana HOM05D000596 ORTHO05D002115 2.5e-07 59.3 55 49.1
DCAR_018422 Daucus carota HOM05D000596 ORTHO05D002115 2.5e-07 59.3 93 36.6
Peaxi162Scf00641g00419 Petunia axillaris HOM05D000596 ORTHO05D002115 2.5e-07 59.3 104 30.8
Eucgr.H01472 Eucalyptus grandis HOM05D000596 ORTHO05D002115 3.2e-07 58.9 74 43.2
Peaxi162Scf00009g02720 Petunia axillaris HOM05D000596 ORTHO05D002115 3.2e-07 58.9 72 44.4
FAN25G2829 Fragaria x ananassa HOM05D000596 ORTHO05D002115 4.2e-07 58.5 66 42.4
SalBow4G2952 Salvia bowleyana HOM05D000596 ORTHO05D002115 4.2e-07 58.5 82 37.8
HanXRQChr15g0466721 Helianthus annuus HOM05D000596 ORTHO05D002115 5.5e-07 58.2 96 38.5
MBI04_g40952_MAGBIO Magnolia biondii HOM05D000596 ORTHO05D002115 5.5e-07 58.2 82 40.2
Aa31LG5G2460 Aethionema arabicum HOM05D000596 ORTHO05D002115 7.2e-07 57.8 113 27.4
Sed0019179 Sechium edule HOM05D000596 ORTHO05D002115 7.2e-07 57.8 67 40.3
Lj1A615T8 Lonicera japonica HOM05D000596 ORTHO05D002115 9.4e-07 57.4 94 37.2
PGSC0003DMG400020053 Solanum tuberosum HOM05D000596 ORTHO05D002115 9.4e-07 57.4 96 34.4
TWI13G0001 Tripterygium wilfordii HOM05D000596 ORTHO05D002115 9.4e-07 57.4 80 42.5
TWI74G0138 Tripterygium wilfordii HOM05D000596 ORTHO05D002115 9.4e-07 57.4 80 42.5
Aqoxy7G01387 Aquilegia oxysepala HOM05D000596 ORTHO05D002115 1.2e-06 57.0 95 32.6
AT4G02780 Arabidopsis thaliana HOM05D000596 ORTHO05D002115 1.2e-06 57.0 90 33.3
Lsat_1_v5_gn_9_3541 Lactuca sativa HOM05D000596 ORTHO05D002115 1.2e-06 57.0 66 47.0
HanXRQChr10g0282621 Helianthus annuus HOM05D000596 ORTHO05D002115 1.6e-06 56.6 68 47.1
Oeu008755.1 Olea europaea HOM05D000596 ORTHO05D002115 1.6e-06 56.6 60 43.3
SalBow6G6105 Salvia bowleyana HOM05D000596 ORTHO05D002115 1.6e-06 56.6 66 42.4
AL6G50150 Arabidopsis lyrata HOM05D000596 ORTHO05D002115 2.1e-06 56.2 76 34.2
Lj1A609G11 Lonicera japonica HOM05D000596 ORTHO05D002115 2.1e-06 56.2 83 38.6
Lj1A612G7 Lonicera japonica HOM05D000596 ORTHO05D002115 2.1e-06 56.2 83 38.6
Oeu001634.1 Olea europaea HOM05D000596 ORTHO05D002115 2.1e-06 56.2 108 33.3
Oeu008757.1 Olea europaea HOM05D000596 ORTHO05D002115 2.1e-06 56.2 80 41.2
PSO210G2111 Papaver somniferum HOM05D000596 ORTHO05D002115 2.1e-06 56.2 78 38.5
SGA_v2.0_scaffold1G00487 Striga asiatica HOM05D000596 ORTHO05D002115 2.1e-06 56.2 76 39.5
BcaC04g24014 Brassica carinata HOM05D000596 ORTHO05D002115 2.7e-06 55.8 77 36.4
A09p02200 Brassica napus HOM05D000596 ORTHO05D002115 2.7e-06 55.8 77 36.4
BolC9t53157H Brassica oleracea HOM05D000596 ORTHO05D002115 2.7e-06 55.8 77 36.4
BraA09t35869Z Brassica rapa HOM05D000596 ORTHO05D002115 2.7e-06 55.8 77 36.4
Thhalv10029352m.g Eutrema salsugineum HOM05D000596 ORTHO05D002115 2.7e-06 55.8 77 36.4
HanXRQChr03g0061811 Helianthus annuus HOM05D000596 ORTHO05D002115 2.7e-06 55.8 71 43.7
Nitab4.5_0000759g0220 Nicotiana tabacum HOM05D000596 ORTHO05D002115 2.7e-06 55.8 111 30.6
Peaxi162Scf00045g00916 Petunia axillaris HOM05D000596 ORTHO05D002115 2.7e-06 55.8 86 38.4
C09p02280 Brassica napus HOM05D000596 ORTHO05D002115 4.7e-06 55.1 77 36.4
Sp6g02810 Schrenkiella parvula HOM05D000596 ORTHO05D002115 4.7e-06 55.1 90 33.3
Oeu021903.1 Olea europaea HOM05D000596 ORTHO05D002115 6.1e-06 54.7 80 41.2
Oeu038260.1 Olea europaea HOM05D000596 ORTHO05D002115 6.1e-06 54.7 108 32.4
Os02g0571100 Oryza sativa ssp. japonica HOM05D000596 ORTHO05D002115 6.1e-06 54.7 76 34.2
Peaxi162Scf00014g00271 Petunia axillaris HOM05D000596 ORTHO05D002115 6.1e-06 54.7 58 44.8
Peaxi162Scf00045g00824 Petunia axillaris HOM05D000596 ORTHO05D002115 6.1e-06 54.7 63 44.4
Carub.0006s3428 Capsella rubella HOM05D000596 ORTHO05D002115 8.0e-06 54.3 71 38.0


User provided reference genes

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