Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g442800 Medicago truncatula HOM05D001770 ORTHO05D022116 2.6e-30 134.8 71 100.0
Medtr6g013425 Medicago truncatula HOM05D001770 ORTHO05D001822 9.2e-20 99.8 54 90.7
arahy.Tifrunner.gnm1.ann1.ICZJ7L Arachis hypogaea HOM05D001770 ORTHO05D001822 3.3e-17 91.3 54 79.6
TPR.G26176 Trifolium pratense HOM05D001770 ORTHO05D001822 5.6e-17 90.5 54 79.6
Ca_04864_v3 Cicer arietinum L. HOM05D001770 ORTHO05D001822 7.3e-17 90.1 54 79.6
Lj2g0014655 Lotus japonicus HOM05D001770 ORTHO05D001822 1.6e-16 89.0 54 75.9
Lalb_Chr06g0175131 Lupinus albus HOM05D001770 ORTHO05D001822 2.8e-16 88.2 54 75.9
Psat1g069200 Pisum sativum HOM05D001770 ORTHO05D001822 2.8e-16 88.2 54 77.8
Phvul.004G032900 Phaseolus vulgaris HOM05D001770 ORTHO05D001822 6.2e-16 87.0 54 77.8
Psat1g071160 Pisum sativum HOM05D001770 ORTHO05D001822 1.1e-15 86.3 54 75.9
VMungo0464G0711 Vigna mungo HOM05D001770 ORTHO05D001822 1.1e-15 86.3 53 77.4
Glyma.13G059400 Glycine max HOM05D001770 ORTHO05D001822 8.9e-15 83.2 53 73.6
Glyma.19G027100 Glycine max HOM05D001770 ORTHO05D001822 8.9e-15 83.2 53 73.6
Lalb_Chr02g0159081 Lupinus albus HOM05D001770 ORTHO05D001822 4.9e-13 77.4 54 68.5
Lalb_Chr21g0318481 Lupinus albus HOM05D001770 ORTHO05D001822 4.9e-13 77.4 53 67.9
Rhsim10G0034700 Rhododendron simsii HOM05D001770 ORTHO05D001822 4.9e-13 77.4 54 68.5
Cfa007613 Carpinus fangiana HOM05D001770 ORTHO05D001822 1.4e-12 75.9 55 63.6
Haze_14480 Corylus avellana HOM05D001770 ORTHO05D001822 1.4e-12 75.9 55 63.6
Actinidia01960 Actinidia chinensis HOM05D001770 ORTHO05D001822 1.9e-12 75.5 54 66.7
arahy.Tifrunner.gnm1.ann1.C0Q7J8 Arachis hypogaea HOM05D001770 ORTHO05D001822 2.4e-12 75.1 55 72.7
TWI34G1620 Tripterygium wilfordii HOM05D001770 ORTHO05D001822 2.4e-12 75.1 53 67.9
vmacro05674 Vaccinium macrocarpon HOM05D001770 ORTHO05D001822 3.2e-12 74.7 54 66.7
arahy.Tifrunner.gnm1.ann1.HR29B7 Arachis hypogaea HOM05D001770 ORTHO05D001822 5.4e-12 73.9 54 74.1
TWI32G1248 Tripterygium wilfordii HOM05D001770 ORTHO05D001822 5.4e-12 73.9 53 64.2
Sed0007723 Sechium edule HOM05D001770 ORTHO05D001822 2.7e-11 71.6 54 61.1
TWI34G0967 Tripterygium wilfordii HOM05D001770 ORTHO05D001822 2.7e-11 71.6 53 62.3
SalBow1G0861 Salvia bowleyana HOM05D001770 ORTHO05D001822 4.6e-11 70.9 54 63.0
SalBow1G4967 Salvia bowleyana HOM05D001770 ORTHO05D001822 4.6e-11 70.9 54 63.0
Oeu023716.2 Olea europaea HOM05D001770 ORTHO05D001822 7.8e-11 70.1 54 61.1
MELO3C022018.2 Cucumis melo HOM05D001770 ORTHO05D001822 1.0e-10 69.7 55 56.4
Eucgr.I01994 Eucalyptus grandis HOM05D001770 ORTHO05D001822 1.0e-10 69.7 54 57.4
Hma1.2p1_2018F.1_g311230 Hydrangea macrophylla HOM05D001770 ORTHO05D022116 1.0e-10 69.7 52 65.4
Sed0010913 Sechium edule HOM05D001770 ORTHO05D001822 1.0e-10 69.7 54 57.4
TWI34G0096 Tripterygium wilfordii HOM05D001770 ORTHO05D001822 1.0e-10 69.7 53 60.4
Actinidia26240 Actinidia chinensis HOM05D001770 ORTHO05D001822 1.3e-10 69.3 54 57.4
ClCG11G004600 Citrullus lanatus HOM05D001770 ORTHO05D001822 1.7e-10 68.9 54 57.4
Oeu000849.1 Olea europaea HOM05D001770 ORTHO05D001822 1.7e-10 68.9 54 61.1
CsaV3_5G038370 Cucumis sativus L. HOM05D001770 ORTHO05D001822 3.0e-10 68.2 54 57.4
Atru.chr8.362 Acer truncatum HOM05D001770 ORTHO05D001822 5.1e-10 67.4 54 61.1
QL02p039270 Quercus lobata HOM05D001770 ORTHO05D001822 5.1e-10 67.4 54 59.3
TAR374G0343 Trochodendron aralioides HOM05D001770 ORTHO05D001822 6.6e-10 67.0 54 63.0
CiPaw.03G020900 Carya illinoinensis HOM05D001770 ORTHO05D001822 8.6e-10 66.6 56 58.9
CANSAT64G2863 Cannabis sativa HOM05D001770 ORTHO05D001822 1.1e-09 66.2 54 61.1
CSS0015222 Camellia sinensis var. sinensis HOM05D001770 ORTHO05D001822 1.5e-09 65.9 54 59.3
CSS0022797 Camellia sinensis var. sinensis HOM05D001770 ORTHO05D001822 1.5e-09 65.9 54 59.3
CiPaw.04G013800 Carya illinoinensis HOM05D001770 ORTHO05D001822 1.5e-09 65.9 57 52.6
PSO063G3225 Papaver somniferum HOM05D001770 ORTHO05D001822 1.9e-09 65.5 54 61.1
PSO063G4447 Papaver somniferum HOM05D001770 ORTHO05D001822 1.9e-09 65.5 54 61.1
Gohir.D11G074800 Gossypium hirsutum HOM05D001770 ORTHO05D001822 2.5e-09 65.1 54 61.1
Gorai.007G080400 Gossypium raimondii HOM05D001770 ORTHO05D001822 2.5e-09 65.1 54 61.1
MSTRG.23909 Avicennia marina HOM05D001770 ORTHO05D001822 3.3e-09 64.7 54 55.6
Cc07_g03760 Coffea canephora HOM05D001770 ORTHO05D001822 3.3e-09 64.7 54 59.3
COL.COLO4_12246 Corchorus olitorius HOM05D001770 ORTHO05D001822 4.3e-09 64.3 56 58.9
Gohir.D11G075200 Gossypium hirsutum HOM05D001770 ORTHO05D001822 4.3e-09 64.3 54 61.1
Potri.017G088700 Populus trichocarpa HOM05D001770 ORTHO05D001822 4.3e-09 64.3 54 57.4
THA.LOC104823898 Tarenaya hassleriana HOM05D001770 ORTHO05D001822 4.3e-09 64.3 57 56.1
Gorai.007G080800 Gossypium raimondii HOM05D001770 ORTHO05D001822 5.6e-09 63.9 54 61.1
Lsat_1_v5_gn_4_170081 Lactuca sativa HOM05D001770 ORTHO05D001822 5.6e-09 63.9 54 57.4
THA.LOC104805492 Tarenaya hassleriana HOM05D001770 ORTHO05D001822 5.6e-09 63.9 56 58.9
CSS0024860 Camellia sinensis var. sinensis HOM05D001770 ORTHO05D001822 7.3e-09 63.5 54 59.3
Dinv34108 Davidia involucrata HOM05D001770 ORTHO05D001822 7.3e-09 63.5 54 57.4
Peaxi162Scf00166g00931 Petunia axillaris HOM05D001770 ORTHO05D001822 7.3e-09 63.5 54 57.4
unitig_62.g23438 Utricularia gibba HOM05D001770 ORTHO05D001822 7.3e-09 63.5 52 53.8
Carub.0005s0793 Capsella rubella HOM05D001770 ORTHO05D001822 9.5e-09 63.2 59 50.8
Sabra17G0078500 Salix brachista HOM05D001770 ORTHO05D001822 9.5e-09 63.2 54 57.4
SGA_v2.0_scaffold4G02423 Striga asiatica HOM05D001770 ORTHO05D001822 9.5e-09 63.2 53 58.5
Manes.01G099900 Manihot esculenta HOM05D001770 ORTHO05D001822 1.2e-08 62.8 54 53.7
SGA_v2.0_scaffold236G43753 Striga asiatica HOM05D001770 ORTHO05D001822 1.2e-08 62.8 53 58.5
CSS0049703 Camellia sinensis var. sinensis HOM05D001770 ORTHO05D001822 1.6e-08 62.4 56 58.9
CiPaw.05G128400 Carya illinoinensis HOM05D001770 ORTHO05D001822 1.6e-08 62.4 54 53.7
Duzib147G1043 Durio zibethinus HOM05D001770 ORTHO05D001822 1.6e-08 62.4 53 60.4
Sabra04G0066300 Salix brachista HOM05D001770 ORTHO05D001822 1.6e-08 62.4 54 53.7
Sc11g0004860 Simmondsia chinensis HOM05D001770 ORTHO05D001822 1.6e-08 62.4 54 57.4
Zm00001eb370320 Zea mays HOM05D001770 ORTHO05D001822 1.6e-08 62.4 53 56.6
HanXRQChr07g0199531 Helianthus annuus HOM05D001770 ORTHO05D001822 2.1e-08 62.0 56 57.1
Nitab4.5_0001591g0050 Nicotiana tabacum HOM05D001770 ORTHO05D001822 2.1e-08 62.0 54 57.4
Thecc.04G089100 Theobroma cacao HOM05D001770 ORTHO05D001822 2.1e-08 62.0 54 57.4
unitig_52.g17600 Utricularia gibba HOM05D001770 ORTHO05D001822 2.1e-08 62.0 52 53.8
Zm00001eb152250 Zea mays HOM05D001770 ORTHO05D001822 2.1e-08 62.0 54 55.6
MSTRG.15462 Avicennia marina HOM05D001770 ORTHO05D001822 2.8e-08 61.6 52 55.8
A09p04000 Brassica napus HOM05D001770 ORTHO05D001822 2.8e-08 61.6 58 51.7
Rhsim12G0077400 Rhododendron simsii HOM05D001770 ORTHO05D001822 2.8e-08 61.6 54 57.4
MBI19_g41017_MAGBIO Magnolia biondii HOM05D001770 ORTHO05D001822 3.6e-08 61.2 54 59.3
Nitab4.5_0000568g0270 Nicotiana tabacum HOM05D001770 ORTHO05D001822 3.6e-08 61.2 54 57.4
PGR004G2619 Punica granatum HOM05D001770 ORTHO05D001822 4.7e-08 60.8 55 56.4
BcaC06g30888 Brassica carinata HOM05D001770 ORTHO05D001822 6.2e-08 60.5 58 51.7
Prupe.3G261500 Prunus persica HOM05D001770 ORTHO05D001822 6.2e-08 60.5 55 56.4
Sed0013447 Sechium edule HOM05D001770 ORTHO05D001822 6.2e-08 60.5 54 51.9
AL5G19120 Arabidopsis lyrata HOM05D001770 ORTHO05D001822 8.1e-08 60.1 59 50.8
BcaC06g33678 Brassica carinata HOM05D001770 ORTHO05D001822 8.1e-08 60.1 59 50.8
C07p38100 Brassica napus HOM05D001770 ORTHO05D001822 8.1e-08 60.1 59 50.8
ECA232G2112 Erigeron canadensis HOM05D001770 ORTHO05D001822 8.1e-08 60.1 54 51.9
QL03p070061 Quercus lobata HOM05D001770 ORTHO05D001822 8.1e-08 60.1 53 54.7
Solyc02g088460.4 Solanum lycopersicum HOM05D001770 ORTHO05D001822 8.1e-08 60.1 54 59.3
Sopen02g033170 Solanum pennellii HOM05D001770 ORTHO05D001822 8.1e-08 60.1 54 59.3
Actinidia31954 Actinidia chinensis HOM05D001770 ORTHO05D001822 1.1e-07 59.7 54 55.6
A06p40060 Brassica napus HOM05D001770 ORTHO05D001822 1.1e-07 59.7 60 50.0
BolC7t44332H Brassica oleracea HOM05D001770 ORTHO05D001822 1.1e-07 59.7 60 50.0
BraA06t26921Z Brassica rapa HOM05D001770 ORTHO05D001822 1.1e-07 59.7 60 50.0
CAN.G206.189 Capsicum annuum HOM05D001770 ORTHO05D001822 1.1e-07 59.7 57 54.4
Dinv33798 Davidia involucrata HOM05D001770 ORTHO05D001822 1.1e-07 59.7 55 50.9
Migut.H00667 Erythranthe guttata HOM05D001770 ORTHO05D001822 1.1e-07 59.7 54 53.7
HanXRQChr09g0264081 Helianthus annuus HOM05D001770 ORTHO05D001822 1.1e-07 59.7 54 51.9
HanXRQChr15g0488421 Helianthus annuus HOM05D001770 ORTHO05D001822 1.1e-07 59.7 54 51.9
vmacro01337 Vaccinium macrocarpon HOM05D001770 ORTHO05D001822 1.1e-07 59.7 53 56.6
Aa31LG2G4040 Aethionema arabicum HOM05D006813 ORTHO05D008657 1.4e-07 59.3 58 55.2
BcaB04g19507 Brassica carinata HOM05D001770 ORTHO05D001822 1.4e-07 59.3 51 51.0
CARHR153860 Cardamine hirsuta HOM05D001770 ORTHO05D001822 1.4e-07 59.3 59 52.5
Lsat_1_v5_gn_2_88180 Lactuca sativa HOM05D001770 ORTHO05D001822 1.4e-07 59.3 54 59.3
DCAR_025402 Daucus carota HOM05D001770 ORTHO05D001822 1.8e-07 58.9 54 59.3
Medtr5g043210 Medicago truncatula HOM05D001770 ORTHO05D001822 1.8e-07 58.9 54 51.9
BraA09t36037Z Brassica rapa HOM05D001770 ORTHO05D001822 2.4e-07 58.5 58 50.0
Lj4A114T83 Lonicera japonica HOM05D001770 ORTHO05D001822 2.4e-07 58.5 54 51.9
Sp2g17810 Schrenkiella parvula HOM05D001770 ORTHO05D001822 2.4e-07 58.5 60 48.3
Hund13177 Selenicereus undatus HOM05D001770 ORTHO05D001822 2.4e-07 58.5 53 50.9
TWI79G1782 Tripterygium wilfordii HOM05D001770 ORTHO05D001822 2.4e-07 58.5 53 49.1
GSVIVG01011478001 Vitis vinifera HOM05D001770 ORTHO05D001822 2.4e-07 58.5 55 52.7
AT3G29200 Arabidopsis thaliana HOM05D001770 ORTHO05D001822 3.1e-07 58.2 47 53.2
BcaC04g23844 Brassica carinata HOM05D001770 ORTHO05D001822 3.1e-07 58.2 58 50.0
C09p04220 Brassica napus HOM05D001770 ORTHO05D001822 3.1e-07 58.2 58 50.0
BolC9t53353H Brassica oleracea HOM05D001770 ORTHO05D001822 3.1e-07 58.2 58 50.0
ClCG10G015470 Citrullus lanatus HOM05D001770 ORTHO05D001822 3.1e-07 58.2 54 53.7
DCAR_005556 Daucus carota HOM05D001770 ORTHO05D001822 3.1e-07 58.2 54 59.3
PGSC0003DMG400001438 Solanum tuberosum HOM05D001770 ORTHO05D001822 3.1e-07 58.2 54 57.4
MELO3C009834.2 Cucumis melo HOM05D001770 ORTHO05D001822 4.0e-07 57.8 54 51.9
MD09G1057700 Malus domestica HOM05D001770 ORTHO05D001822 4.0e-07 57.8 56 57.1
Potri.010G162300 Populus trichocarpa HOM05D001770 ORTHO05D001822 4.0e-07 57.8 54 48.1
Prupe.1G281400 Prunus persica HOM05D001770 ORTHO05D001822 4.0e-07 57.8 54 51.9
Aqoxy3G03536 Aquilegia oxysepala HOM05D001770 ORTHO05D001822 5.2e-07 57.4 53 54.7
CSS0004574 Camellia sinensis var. sinensis HOM05D001770 ORTHO05D001822 5.2e-07 57.4 42 69.0
Ciclev10012189m.g Citrus clementina HOM05D001770 ORTHO05D001822 6.8e-07 57.0 54 53.7
Thhalv10004549m.g Eutrema salsugineum HOM05D001770 ORTHO05D001822 6.8e-07 57.0 61 47.5
BcaB07g30092 Brassica carinata HOM05D001770 ORTHO05D001822 8.9e-07 56.6 56 50.0
CsaV3_3G041000 Cucumis sativus L. HOM05D001770 ORTHO05D001822 8.9e-07 56.6 54 51.9
HanXRQChr14g0448631 Helianthus annuus HOM05D001770 ORTHO05D001822 8.9e-07 56.6 54 51.9
Sabra10G0123400 Salix brachista HOM05D001770 ORTHO05D001822 8.9e-07 56.6 54 48.1
TPR.G22410 Trifolium pratense HOM05D001770 ORTHO05D001822 8.9e-07 56.6 54 51.9
Duzib251G0155 Durio zibethinus HOM05D001770 ORTHO05D001822 1.2e-06 56.2 55 54.5
Glyma.08G241000 Glycine max HOM05D001770 ORTHO05D001822 1.2e-06 56.2 53 52.8
MD17G1054600 Malus domestica HOM05D001770 ORTHO05D001822 1.2e-06 56.2 55 54.5
RcHm_v2.0_Chr4g0438951 Rosa chinensis HOM05D001770 ORTHO05D001822 1.2e-06 56.2 53 54.7
TAR371G0508 Trochodendron aralioides HOM05D001770 ORTHO05D001822 1.2e-06 56.2 54 51.9
CARHR062250 Cardamine hirsuta HOM05D001770 ORTHO05D001822 1.5e-06 55.8 54 50.0
Dinv11495 Davidia involucrata HOM05D001770 ORTHO05D001822 1.5e-06 55.8 57 50.9
FvH4_6g47770 Fragaria vesca HOM05D001770 ORTHO05D001822 1.5e-06 55.8 57 56.1
FAN02G3959 Fragaria x ananassa HOM05D001770 ORTHO05D001822 1.5e-06 55.8 57 56.1
FAN05G1409 Fragaria x ananassa HOM05D001770 ORTHO05D001822 1.5e-06 55.8 57 56.1
FAN09G2878 Fragaria x ananassa HOM05D001770 ORTHO05D001822 1.5e-06 55.8 57 56.1
FAN14G0456 Fragaria x ananassa HOM05D001770 ORTHO05D001822 1.5e-06 55.8 57 56.1
FAN17G0231 Fragaria x ananassa HOM05D001770 ORTHO05D001822 1.5e-06 55.8 53 49.1
Os01g0764400 Oryza sativa ssp. japonica HOM05D001770 ORTHO05D001822 1.5e-06 55.8 53 52.8
PSO478G0708 Papaver somniferum HOM05D001770 ORTHO05D001822 1.5e-06 55.8 53 54.7
Ca_04898_v3 Cicer arietinum L. HOM05D001770 ORTHO05D001822 2.0e-06 55.5 54 51.9
Ah.12g062510 Amaranthus hybridus HOM05D001770 ORTHO05D001822 2.6e-06 55.1 56 50.0
DCAR_022859 Daucus carota HOM05D001770 ORTHO05D001822 2.6e-06 55.1 53 54.7
PGR102G2726 Punica granatum HOM05D001770 ORTHO05D001822 2.6e-06 55.1 55 54.5
AT1G69370 Arabidopsis thaliana HOM05D001770 ORTHO05D001822 3.4e-06 54.7 54 46.3
CSS0018372 Camellia sinensis var. sinensis HOM05D001770 ORTHO05D001822 3.4e-06 54.7 49 57.1
FvH4_4g30560 Fragaria vesca HOM05D001770 ORTHO05D001822 3.4e-06 54.7 53 47.2
FAN12G1455 Fragaria x ananassa HOM05D001770 ORTHO05D001822 3.4e-06 54.7 53 47.2
FAN22G2320 Fragaria x ananassa HOM05D001770 ORTHO05D005831 3.4e-06 54.7 53 49.1
RcHm_v2.0_Chr2g0166931 Rosa chinensis HOM05D001770 ORTHO05D001822 3.4e-06 54.7 57 54.4
THA.LOC104824958 Tarenaya hassleriana HOM05D001770 ORTHO05D001822 3.4e-06 54.7 53 49.1
Ah.10g031870 Amaranthus hybridus HOM05D001770 ORTHO05D001822 4.4e-06 54.3 56 42.9
CSS0042474 Camellia sinensis var. sinensis HOM05D001770 ORTHO05D022116 4.4e-06 54.3 39 66.7
CSS0049681 Camellia sinensis var. sinensis HOM05D001770 ORTHO05D022116 4.4e-06 54.3 39 66.7
Cfa008914 Carpinus fangiana HOM05D001770 ORTHO05D001822 4.4e-06 54.3 54 48.1
Haze_11940 Corylus avellana HOM05D001770 ORTHO05D001822 4.4e-06 54.3 54 46.3
Duzib268G0794 Durio zibethinus HOM05D001770 ORTHO05D001822 4.4e-06 54.3 55 54.5
Migut.K01296 Erythranthe guttata HOM05D001770 ORTHO05D001822 4.4e-06 54.3 56 46.4
Gohir.A13G079600 Gossypium hirsutum HOM05D001770 ORTHO05D001822 4.4e-06 54.3 55 52.7
Gohir.D13G079300 Gossypium hirsutum HOM05D001770 ORTHO05D001822 4.4e-06 54.3 55 52.7
Gorai.013G090700 Gossypium raimondii HOM05D001770 ORTHO05D001822 4.4e-06 54.3 55 52.7
MD16G1065700 Malus domestica HOM05D001770 ORTHO05D001822 4.4e-06 54.3 55 54.5
THA.LOC104822026 Tarenaya hassleriana HOM05D001770 ORTHO05D001822 4.4e-06 54.3 53 50.9
AUR62034460 Chenopodium quinoa HOM05D001770 ORTHO05D001822 5.8e-06 53.9 57 52.6
Aa31LG4G11490 Aethionema arabicum HOM05D001770 ORTHO05D001822 7.6e-06 53.5 54 50.0
CSS0011502 Camellia sinensis var. sinensis HOM05D001770 ORTHO05D001822 7.6e-06 53.5 46 58.7
Nitab4.5_0006099g0020 Nicotiana tabacum HOM05D001770 ORTHO05D001822 7.6e-06 53.5 52 46.2
Psat2g127280 Pisum sativum HOM05D001770 ORTHO05D001822 7.6e-06 53.5 62 45.2
EL10Ac2g03039 Beta vulgaris HOM05D001770 ORTHO05D001822 9.9e-06 53.1 55 50.9
Carub.0002s1597 Capsella rubella HOM05D001770 ORTHO05D001822 9.9e-06 53.1 54 46.3
ECA238G2223 Erigeron canadensis HOM05D001770 ORTHO05D001822 9.9e-06 53.1 54 55.6
MD13G1066600 Malus domestica HOM05D001770 ORTHO05D001822 9.9e-06 53.1 55 52.7


User provided reference genes

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