Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g442670 Medicago truncatula HOM05D008051 ORTHO05D009905 9.3e-70 266.9 151 100.0
Medtr8g442580 Medicago truncatula HOM05D008051 ORTHO05D009905 7.9e-29 131.0 69 82.6
Medtr7g025060 Medicago truncatula HOM05D008051 ORTHO05D009905 8.8e-28 127.5 106 57.5
Medtr5g063040 Medicago truncatula HOM05D008051 ORTHO05D009905 1.5e-27 126.7 152 59.2
TPR.G24073 Trifolium pratense HOM05D008051 ORTHO05D009905 3.7e-26 122.1 152 63.2
Medtr7g074360 Medicago truncatula HOM05D008051 ORTHO05D009905 1.4e-25 120.2 152 60.5
Medtr7g074340 Medicago truncatula HOM05D008051 ORTHO05D009905 6.9e-25 117.9 152 59.9
Medtr7g074350 Medicago truncatula HOM05D008051 ORTHO05D009905 6.9e-25 117.9 152 59.9
Psat2g012240 Pisum sativum HOM05D008051 ORTHO05D009905 4.2e-22 108.6 98 54.1
TPR.G1196 Trifolium pratense HOM05D008051 ORTHO05D009905 5.2e-20 101.7 92 63.0
Medtr5g093370 Medicago truncatula HOM05D008051 ORTHO05D009905 2.8e-18 95.9 105 47.6
CANSAT11G0109 Cannabis sativa HOM05D008051 ORTHO05D009905 3.7e-18 95.5 93 46.2
Medtr5g093340 Medicago truncatula HOM05D008051 ORTHO05D009905 2.4e-17 92.8 94 47.9
TPR.G33768 Trifolium pratense HOM05D008051 ORTHO05D009905 1.0e-15 87.4 104 44.2
TPR.G1175 Trifolium pratense HOM05D008051 ORTHO05D009905 1.3e-15 87.0 106 49.1
Haze_21342 Corylus avellana HOM05D008051 ORTHO05D009905 8.5e-15 84.3 80 47.5
Cfa020295 Carpinus fangiana HOM05D008051 ORTHO05D009905 1.1e-14 84.0 80 50.0
Dinv40787 Davidia involucrata HOM05D002089 ORTHO05D002848 2.5e-14 82.8 50 68.0
Haze_21340 Corylus avellana HOM05D008051 ORTHO05D009905 3.2e-14 82.4 80 47.5
LjContig00272g0004425 Lotus japonicus HOM05D008051 ORTHO05D009905 3.2e-14 82.4 105 44.8
Haze_09724 Corylus avellana HOM05D008051 ORTHO05D009905 4.2e-14 82.0 106 43.4
CAN.G407.107 Capsicum annuum HOM05D008051 ORTHO05D009905 7.2e-14 81.3 92 45.7
Cfa012978 Carpinus fangiana HOM05D008051 ORTHO05D009905 9.4e-14 80.9 55 54.5
Oeu021430.1 Olea europaea HOM05D008051 ORTHO05D009905 1.6e-13 80.1 71 52.1
DCAR_009646 Daucus carota HOM05D008051 ORTHO05D009905 2.7e-13 79.3 64 50.0
Rhsim06G0068300 Rhododendron simsii HOM05D008051 ORTHO05D009905 2.7e-13 79.3 100 43.0
Phvul.008G269500 Phaseolus vulgaris HOM05D008051 ORTHO05D009905 3.6e-13 79.0 97 41.2
CSS0002609 Camellia sinensis var. sinensis HOM05D008051 ORTHO05D009905 6.1e-13 78.2 99 41.4
Glyma.14G021900 Glycine max HOM05D008051 ORTHO05D009905 8.0e-13 77.8 101 40.6
QL08p007021 Quercus lobata HOM05D008051 ORTHO05D009905 8.0e-13 77.8 49 63.3
vmacro21377 Vaccinium macrocarpon HOM05D008051 ORTHO05D009905 8.0e-13 77.8 95 41.1
Glyma.18G093000 Glycine max HOM05D008051 ORTHO05D009905 3.0e-12 75.9 49 57.1
Glyma.02G292700 Glycine max HOM05D008051 ORTHO05D009905 4.0e-12 75.5 93 44.1
Solyc03g116450.1 Solanum lycopersicum HOM05D008051 ORTHO05D009905 5.2e-12 75.1 92 41.3
RcHm_v2.0_Chr5g0041151 Rosa chinensis HOM05D008051 ORTHO05D009905 6.7e-12 74.7 93 41.9
Lalb_Chr17g0348611 Lupinus albus HOM05D008051 ORTHO05D009905 8.8e-12 74.3 99 38.4
CiPaw.11G193500 Carya illinoinensis HOM05D008051 ORTHO05D009905 1.2e-11 73.9 44 65.9
arahy.Tifrunner.gnm1.ann1.QA2XZ5 Arachis hypogaea HOM05D008051 ORTHO05D009905 1.5e-11 73.6 89 37.1
PGSC0003DMG401000629 Solanum tuberosum HOM05D008051 ORTHO05D009905 2.6e-11 72.8 70 47.1
Lalb_Chr04g0248291 Lupinus albus HOM05D008051 ORTHO05D009905 3.3e-11 72.4 96 42.7
Phvul.006G046600 Phaseolus vulgaris HOM05D008051 ORTHO05D009905 3.3e-11 72.4 49 57.1
MBI18_g27147_MAGBIO Magnolia biondii HOM05D008051 ORTHO05D009905 5.7e-11 71.6 101 34.7
THA.LOC104798770 Tarenaya hassleriana HOM05D012777 ORTHO05D009905 7.5e-11 71.2 46 65.2
Ah.04g166050 Amaranthus hybridus HOM05D000120 ORTHO05D002159 9.7e-11 70.9 93 40.9
EL10Ac4g07747 Beta vulgaris HOM05D008051 ORTHO05D009905 1.7e-10 70.1 79 45.6
Eucgr.F00712 Eucalyptus grandis HOM05D008051 ORTHO05D009905 2.8e-10 69.3 97 42.3
VMungo0540G2374 Vigna mungo HOM05D008051 ORTHO05D009905 2.8e-10 69.3 49 49.0
Sabra11G0071300 Salix brachista HOM05D008051 ORTHO05D009905 3.7e-10 68.9 46 58.7
Prupe.4G221300 Prunus persica HOM05D008051 ORTHO05D009905 6.3e-10 68.2 103 36.9
Cpa.g.sc12.286 Carica papaya HOM05D008051 ORTHO05D009905 8.2e-10 67.8 94 38.3
Migut.N00262 Erythranthe guttata HOM05D008051 ORTHO05D009905 1.4e-09 67.0 48 60.4
Lalb_Chr15g0081481 Lupinus albus HOM05D008051 ORTHO05D009905 4.1e-09 65.5 54 46.3
Ciclev10010548m.g Citrus clementina HOM05D008051 ORTHO05D009905 5.3e-09 65.1 65 50.8
HanXRQChr08g0233561 Helianthus annuus HOM05D008051 ORTHO05D009905 7.0e-09 64.7 44 56.8
PGR083G0962 Punica granatum HOM05D008051 ORTHO05D009905 9.1e-09 64.3 50 56.0
MSTRG.4127 Avicennia marina HOM05D008051 ORTHO05D009905 1.2e-08 63.9 89 37.1
Potri.001G355700 Populus trichocarpa HOM05D008051 ORTHO05D009905 1.2e-08 63.9 89 40.4
TWI39G0594 Tripterygium wilfordii HOM05D008051 ORTHO05D009905 1.2e-08 63.9 103 36.9
MD11G1211300 Malus domestica HOM05D008051 ORTHO05D009905 1.6e-08 63.5 102 40.2
SGA_v2.0_scaffold196G40891 Striga asiatica HOM05D008051 ORTHO05D009905 3.5e-08 62.4 44 54.5
SGA_v2.0_scaffold196G40892 Striga asiatica HOM05D008051 ORTHO05D009905 7.7e-08 61.2 44 54.5
COL.COLO4_09713 Corchorus olitorius HOM05D008051 ORTHO05D009905 1.3e-07 60.5 103 34.0
Lsat_1_v5_gn_5_3180 Lactuca sativa HOM05D008051 ORTHO05D009905 1.3e-07 60.5 53 50.9
Thecc.07G029800 Theobroma cacao HOM05D008051 ORTHO05D009905 1.3e-07 60.5 71 40.8
ATR0752G075 Amborella trichopoda HOM05D008051 ORTHO05D009905 1.7e-07 60.1 60 45.0
Duzib213G0687 Durio zibethinus HOM05D008051 ORTHO05D009905 3.8e-07 58.9 63 44.4
Atru.chr2.3503 Acer truncatum HOM05D007124 ORTHO05D008980 3.2e-06 55.8 43 53.5
Cpa.g.sc12.259 Carica papaya HOM05D008051 ORTHO05D009905 4.2e-06 55.5 37 59.5


User provided reference genes

Program Settings