Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g107730 Medicago truncatula HOM05D006788 ORTHO05D008265 0.0e+00 1666.7 878 100.0
TPR.G1461 Trifolium pratense HOM05D006788 ORTHO05D008265 0.0e+00 1262.3 877 77.4
Ca_17169_v3 Cicer arietinum L. HOM05D005071 ORTHO05D006069 2.3e-277 959.1 822 71.2
Psat7g000480 Pisum sativum HOM05D006788 ORTHO05D008265 1.2e-249 867.1 638 76.8
LjContig00484g0028229 Lotus japonicus HOM05D006788 ORTHO05D008265 4.9e-187 659.1 1109 47.4
Glyma.05G248700 Glycine max HOM05D006788 ORTHO05D008265 9.2e-186 654.8 1077 47.6
Glyma.08G057300 Glycine max HOM05D006788 ORTHO05D008265 9.5e-183 644.8 1072 47.2
VMungo0251G0495 Vigna mungo HOM05D006788 ORTHO05D008265 3.2e-178 629.8 1064 45.9
Phvul.002G333000 Phaseolus vulgaris HOM05D006788 ORTHO05D008265 9.9e-172 608.2 1083 43.7
arahy.Tifrunner.gnm1.ann1.50JV45 Arachis hypogaea HOM05D006788 ORTHO05D008265 3.7e-126 456.8 1043 38.4
arahy.Tifrunner.gnm1.ann1.HV2TRI Arachis hypogaea HOM05D006788 ORTHO05D008265 6.9e-125 452.6 1043 37.9
QL02p008476 Quercus lobata HOM05D006788 ORTHO05D008265 7.0e-109 399.4 1099 33.8
CiPaw.15G077700 Carya illinoinensis HOM05D006788 ORTHO05D008265 4.2e-98 363.6 1100 31.6
Cfa018147 Carpinus fangiana HOM05D006788 ORTHO05D008265 4.7e-97 360.1 1031 33.4
Thecc.08G025800 Theobroma cacao HOM05D006788 ORTHO05D008265 6.7e-96 356.3 1106 33.5
Haze_17976 Corylus avellana HOM05D006788 ORTHO05D008265 4.4e-95 353.6 1064 32.2
Prupe.1G380200 Prunus persica HOM05D006788 ORTHO05D008265 9.7e-95 352.4 1051 33.6
Potri.014G185300 Populus trichocarpa HOM05D006788 ORTHO05D008265 1.7e-94 351.7 1093 32.6
COL.COLO4_26325 Corchorus olitorius HOM05D006788 ORTHO05D008265 2.2e-94 351.3 1101 32.2
Potri.002G261700 Populus trichocarpa HOM05D006788 ORTHO05D008265 2.8e-94 350.9 1096 31.7
Duzib093G0366 Durio zibethinus HOM05D006788 ORTHO05D008265 2.9e-91 340.9 1102 32.2
Ciclev10018661m.g Citrus clementina HOM05D006788 ORTHO05D008265 6.5e-91 339.7 1028 32.8
Dinv36075 Davidia involucrata HOM05D006788 ORTHO05D008265 8.5e-91 339.3 1106 30.8
GSVIVG01009701001 Vitis vinifera HOM05D006788 ORTHO05D008265 1.1e-90 339.0 986 33.2
MD08G1035200 Malus domestica HOM05D006788 ORTHO05D008265 1.5e-90 338.6 994 32.8
Duzib116G0613 Durio zibethinus HOM05D006788 ORTHO05D008265 1.2e-89 335.5 1092 32.1
FAN27G2706 Fragaria x ananassa HOM05D006788 ORTHO05D008265 1.2e-89 335.5 984 32.6
RcHm_v2.0_Chr5g0052261 Rosa chinensis HOM05D006788 ORTHO05D008265 2.7e-89 334.3 994 31.0
Sabra14G0142000 Salix brachista HOM05D006788 ORTHO05D008265 3.6e-89 334.0 1096 31.1
FAN20G0511 Fragaria x ananassa HOM05D006788 ORTHO05D008265 1.8e-88 331.6 1011 30.4
TWI36G0908 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 2.3e-88 331.3 1091 32.2
CSS0004157 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 3.0e-88 330.9 1083 30.7
TWI56G0676 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 1.5e-87 328.6 1098 32.0
Gohir.A06G010500 Gossypium hirsutum HOM05D006788 ORTHO05D008265 1.7e-86 325.1 1096 30.7
FvH4_2g39870 Fragaria vesca HOM05D006788 ORTHO05D008265 2.2e-86 324.7 989 31.2
Gohir.D06G007900 Gossypium hirsutum HOM05D006788 ORTHO05D008265 2.2e-86 324.7 1094 30.5
Gorai.010G010600 Gossypium raimondii HOM05D006788 ORTHO05D008265 6.3e-86 323.2 1096 30.6
CANSAT25G0680 Cannabis sativa HOM05D006788 ORTHO05D008265 1.1e-85 322.4 1034 30.8
Cc10_g02940 Coffea canephora HOM05D006788 ORTHO05D008265 7.0e-85 319.7 1063 31.3
Manes.05G160500 Manihot esculenta HOM05D006788 ORTHO05D008265 7.0e-85 319.7 1091 30.2
MD15G1031800 Malus domestica HOM05D006788 ORTHO05D008265 9.1e-85 319.3 991 31.6
Lalb_Chr05g0221391 Lupinus albus HOM05D006788 ORTHO05D008265 3.6e-81 307.4 718 41.9
Eucgr.F01564 Eucalyptus grandis HOM05D006788 ORTHO05D008265 1.5e-79 302.0 1074 30.9
Lj4A785T32 Lonicera japonica HOM05D006788 ORTHO05D008265 5.7e-79 300.1 1028 30.9
Gorai.005G107800 Gossypium raimondii HOM05D006788 ORTHO05D008265 1.8e-77 295.0 940 31.9
Nn5g29585 Nelumbo nucifera HOM05D006788 ORTHO05D008265 7.0e-77 293.1 1071 29.5
Manes.18G027700 Manihot esculenta HOM05D006788 ORTHO05D008265 2.7e-76 291.2 999 30.8
Hma1.2p1_0203F.1_g086400 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 3.5e-76 290.8 1020 30.0
PGR083G0386 Punica granatum HOM05D006788 ORTHO05D008265 3.5e-76 290.8 960 31.8
ClCG05G019050 Citrullus lanatus HOM05D006788 ORTHO05D008265 5.9e-76 290.0 1097 29.4
Sp2g07230 Schrenkiella parvula HOM05D006788 ORTHO05D008265 5.9e-76 290.0 915 32.5
CsaV3_3G045060 Cucumis sativus L. HOM05D006788 ORTHO05D008265 2.9e-75 287.7 1102 29.9
MELO3C003844.2 Cucumis melo HOM05D006788 ORTHO05D008265 1.9e-74 285.0 1101 29.7
Lsat_1_v5_gn_5_29160 Lactuca sativa HOM05D006788 ORTHO05D008265 4.3e-74 283.9 925 30.4
BcaC04g21980 Brassica carinata HOM05D006788 ORTHO05D008265 5.6e-74 283.5 901 31.2
BraA09t37598Z Brassica rapa HOM05D006788 ORTHO05D008265 1.6e-73 282.0 909 30.9
BolC9t55417H Brassica oleracea HOM05D006788 ORTHO05D008265 2.1e-73 281.6 903 31.5
vmacro21636 Vaccinium macrocarpon HOM05D006788 ORTHO05D008265 3.6e-73 280.8 1083 30.4
A09p19890 Brassica napus HOM05D006788 ORTHO05D008265 1.0e-72 279.3 911 30.8
C09p25220 Brassica napus HOM05D006788 ORTHO05D008265 1.0e-72 279.3 909 30.6
Nitab4.5_0009150g0020 Nicotiana tabacum HOM05D006788 ORTHO05D008265 4.0e-72 277.3 1097 29.6
DCAR_008759 Daucus carota HOM05D006788 ORTHO05D008265 5.2e-72 276.9 1035 29.6
Nitab4.5_0000110g0630 Nicotiana tabacum HOM05D006788 ORTHO05D008265 5.2e-72 276.9 1044 28.4
PGSC0003DMG400005137 Solanum tuberosum HOM05D006788 ORTHO05D008265 1.2e-71 275.8 1105 29.4
Gohir.A05G194600 Gossypium hirsutum HOM05D006788 ORTHO05D008265 2.0e-71 275.0 1022 29.8
TAR381G0400 Trochodendron aralioides HOM05D006788 ORTHO05D008265 3.4e-71 274.2 1062 29.8
Solyc04g080270.4 Solanum lycopersicum HOM05D006788 ORTHO05D008265 9.8e-71 272.7 1096 30.1
Sopen04g033860 Solanum pennellii HOM05D006788 ORTHO05D008265 2.2e-70 271.6 1077 30.0
BcaB07g31060 Brassica carinata HOM05D006788 ORTHO05D008265 3.7e-70 270.8 909 30.8
Rhsim06G0034200 Rhododendron simsii HOM05D006788 ORTHO05D008265 3.7e-70 270.8 1059 29.0
Peaxi162Scf00417g01019 Petunia axillaris HOM05D006788 ORTHO05D008265 1.9e-69 268.5 1098 28.1
AL8G18450 Arabidopsis lyrata HOM05D006788 ORTHO05D008265 5.4e-69 266.9 938 31.4
Gohir.A03G078650 Gossypium hirsutum HOM05D006788 ORTHO05D008265 1.2e-68 265.8 908 30.7
Gorai.009G202800 Gossypium raimondii HOM05D006788 ORTHO05D008265 3.9e-67 260.8 1043 29.6
Dinv39415 Davidia involucrata HOM05D006788 ORTHO05D008265 1.5e-66 258.8 1037 30.1
Thhalv10003405m.g Eutrema salsugineum HOM05D006788 ORTHO05D008265 1.9e-66 258.5 907 29.9
Aa31LG9G12770 Aethionema arabicum HOM05D006788 ORTHO05D008265 3.3e-66 257.7 924 28.6
Carub.0008s0625 Capsella rubella HOM05D006788 ORTHO05D008265 9.5e-66 256.1 923 30.3
THA.LOC104798640 Tarenaya hassleriana HOM05D006788 ORTHO05D008265 6.8e-64 250.0 1048 28.0
AUR62007432 Chenopodium quinoa HOM05D006788 ORTHO05D008265 3.7e-62 244.2 1057 26.6
SGA_v2.0_scaffold326G48711 Striga asiatica HOM05D006788 ORTHO05D008265 8.3e-62 243.0 974 27.4
Aqoxy5G01647 Aquilegia oxysepala HOM05D006788 ORTHO05D008265 1.1e-61 242.7 1065 26.8
AT5G42710 Arabidopsis thaliana HOM05D006788 ORTHO05D008265 3.2e-61 241.1 917 29.9
CARHR181620 Cardamine hirsuta HOM05D006788 ORTHO05D008265 7.0e-61 240.0 918 29.1
AUR62027306 Chenopodium quinoa HOM05D006788 ORTHO05D008265 2.7e-60 238.0 1060 26.5
ECA246G4903 Erigeron canadensis HOM05D006788 ORTHO05D008265 1.7e-59 235.3 915 28.6
HanXRQChr05g0151911 Helianthus annuus HOM05D006788 ORTHO05D008265 3.9e-59 234.2 958 27.5
Gohir.D05G197766 Gossypium hirsutum HOM05D006788 ORTHO05D008265 2.8e-57 228.0 959 28.9
Ah.08g219690 Amaranthus hybridus HOM05D006788 ORTHO05D008265 4.7e-57 227.3 1028 27.8
MBI16_g34334_MAGBIO Magnolia biondii HOM05D006788 ORTHO05D008265 4.0e-56 224.2 1087 25.5
Cpa.g.sc36.70 Carica papaya HOM05D006788 ORTHO05D008265 1.1e-50 206.1 176 58.5
Sc15g0006920 Simmondsia chinensis HOM05D000020 ORTHO05D008265 1.1e-50 206.1 837 27.4
Migut.N00496 Erythranthe guttata HOM05D006788 ORTHO05D008265 8.1e-49 199.9 922 26.0
PSO700G0053 Papaver somniferum HOM05D006788 ORTHO05D008265 7.6e-47 193.4 1043 25.3
Atru.chr13.488 Acer truncatum HOM05D006788 ORTHO05D008265 4.9e-46 190.7 440 38.2
PSO081G0175 Papaver somniferum HOM05D006788 ORTHO05D008265 1.9e-45 188.7 1058 26.1
MSTRG.24293 Avicennia marina HOM05D006788 ORTHO05D008265 9.2e-45 186.4 1040 26.6
Actinidia22550 Actinidia chinensis HOM05D006788 ORTHO05D008265 9.6e-42 176.4 932 27.7
THA.LOC104813209 Tarenaya hassleriana HOM05D006788 ORTHO05D008265 9.6e-42 176.4 893 26.9
Cpa.g.sc36.71 Carica papaya HOM05D006788 ORTHO05D008265 1.6e-41 175.6 808 28.5
CSS0005112 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 1.8e-40 172.2 597 31.8
RcHm_v2.0_Chr6g0300941 Rosa chinensis HOM05D006788 ORTHO05D008265 4.0e-40 171.0 185 45.9
Sed0005360 Sechium edule HOM05D006788 ORTHO05D008265 2.0e-39 168.7 643 31.3
ATR0733G187 Amborella trichopoda HOM05D006788 ORTHO05D008265 4.6e-36 157.5 1223 22.9
Hma1.2p1_2195F.1_g316830 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 4.5e-31 141.0 138 57.2
Os03g0775700 Oryza sativa ssp. japonica HOM05D006788 ORTHO05D008265 3.9e-27 127.9 951 23.8
HPP92_019509 Vanilla planifolia HOM05D006788 ORTHO05D008265 1.9e-26 125.6 960 23.3
Atru.chr13.490 Acer truncatum HOM05D006788 ORTHO05D008265 4.3e-26 124.4 125 51.2
Zm00001eb213730 Zea mays HOM05D006788 ORTHO05D008265 2.6e-23 115.2 830 22.2
Actinidia15324 Actinidia chinensis HOM05D006788 ORTHO05D008265 1.8e-19 102.4 569 26.4
CDE07G1328 Ceratophyllum demersum HOM05D006788 ORTHO05D008265 4.3e-18 97.8 174 36.8
Duzib041G0403 Durio zibethinus HOM05D006788 ORTHO05D008265 9.6e-18 96.7 238 35.7
Thecc.09G108000 Theobroma cacao HOM05D005593 ORTHO05D006515 1.4e-16 92.8 825 22.8
Peaxi162Scf00207g01317 Petunia axillaris HOM05D005593 ORTHO05D006515 1.1e-13 83.2 780 21.3
QL02p043456 Quercus lobata HOM05D005593 ORTHO05D006515 9.3e-13 80.1 858 23.0
CiPaw.03G229900 Carya illinoinensis HOM05D005593 ORTHO05D006515 6.1e-12 77.4 852 22.4
unitig_578.g16070 Utricularia gibba HOM05D006788 ORTHO05D008265 1.0e-11 76.6 330 25.8
ATR0315G161 Amborella trichopoda HOM05D005593 ORTHO05D006515 1.3e-11 76.3 176 31.8
Manes.16G114300 Manihot esculenta HOM05D005593 ORTHO05D006515 2.3e-11 75.5 870 21.4
FAN28G0021 Fragaria x ananassa HOM05D005593 ORTHO05D006515 6.7e-11 73.9 803 22.2
Gohir.D07G006300 Gossypium hirsutum HOM05D005593 ORTHO05D006515 8.7e-11 73.6 756 22.6
FAN23G2457 Fragaria x ananassa HOM05D005593 ORTHO05D006515 1.9e-10 72.4 790 21.0
Ciclev10007444m.g Citrus clementina HOM05D005593 ORTHO05D006515 3.3e-10 71.6 808 22.0
Gorai.001G005900 Gossypium raimondii HOM05D005593 ORTHO05D006515 4.3e-10 71.2 755 22.1
arahy.Tifrunner.gnm1.ann1.F0KYD5 Arachis hypogaea HOM05D005593 ORTHO05D006515 5.7e-10 70.9 891 20.5
PSO782G3244 Papaver somniferum HOM05D005593 ORTHO05D006515 9.7e-10 70.1 171 34.5
FAN26G1119 Fragaria x ananassa HOM05D005593 ORTHO05D006515 1.6e-09 69.3 829 22.3
Prupe.7G233100 Prunus persica HOM05D005593 ORTHO05D006515 1.6e-09 69.3 800 21.1
Duzib187G0236 Durio zibethinus HOM05D005593 ORTHO05D006515 4.8e-09 67.8 910 21.0
PSO832G1383 Papaver somniferum HOM05D005593 ORTHO05D006515 8.2e-09 67.0 190 31.1
Ca_25537_v3 Cicer arietinum L. HOM05D005593 ORTHO05D006515 1.1e-08 66.6 802 20.6
Dinv36648 Davidia involucrata HOM05D005593 ORTHO05D006515 1.4e-08 66.2 847 20.9
FAN19G1075 Fragaria x ananassa HOM05D005593 ORTHO05D006515 2.4e-08 65.5 793 20.2
Glyma.07G084900 Glycine max HOM05D005593 ORTHO05D006515 2.4e-08 65.5 823 21.5
Dinv41619 Davidia involucrata HOM05D005593 ORTHO05D006515 3.1e-08 65.1 857 22.2
Manes.03G022200 Manihot esculenta HOM05D005593 ORTHO05D006515 4.1e-08 64.7 841 23.5
Medtr6g087760 Medicago truncatula HOM05D005593 ORTHO05D006515 5.3e-08 64.3 791 20.1
Psat1g043640 Pisum sativum HOM05D005593 ORTHO05D006515 9.0e-08 63.5 780 20.5
Lalb_Chr22g0352731 Lupinus albus HOM05D005593 ORTHO05D006515 1.5e-07 62.8 822 20.6
CDE04G2912 Ceratophyllum demersum HOM05D006788 ORTHO05D008265 2.0e-07 62.4 223 28.7
QL02p044157 Quercus lobata HOM05D005593 ORTHO05D006515 2.0e-07 62.4 806 19.9
Gorai.010G072700 Gossypium raimondii HOM05D005593 ORTHO05D006515 2.6e-07 62.0 166 30.7
Peaxi162Scf00231g00216 Petunia axillaris HOM05D005593 ORTHO05D006515 2.6e-07 62.0 114 34.2
Rhsim01G0100000 Rhododendron simsii HOM05D005593 ORTHO05D006515 2.6e-07 62.0 79 45.6
Glyma.09G192000 Glycine max HOM05D005593 ORTHO05D006515 3.4e-07 61.6 830 20.8
Cfa003241 Carpinus fangiana HOM05D005593 ORTHO05D006515 5.9e-07 60.8 842 21.6
MD15G1182400 Malus domestica HOM05D005593 ORTHO05D006515 5.9e-07 60.8 805 21.1
PGR142G3553 Punica granatum HOM05D005593 ORTHO05D006515 7.7e-07 60.5 773 20.1
vmacro20713 Vaccinium macrocarpon HOM05D005593 ORTHO05D006515 7.7e-07 60.5 77 44.2
Lj2g0010013 Lotus japonicus HOM05D005593 ORTHO05D006515 1.0e-06 60.1 809 20.8
RcHm_v2.0_Chr2g0090061 Rosa chinensis HOM05D005593 ORTHO05D006515 1.3e-06 59.7 800 20.6
Lj7E653T1 Lonicera japonica HOM05D005593 ORTHO05D006515 1.7e-06 59.3 72 44.4
Rhsim01G0098000 Rhododendron simsii HOM05D005593 ORTHO05D006515 3.8e-06 58.2 74 44.6
Sc08g0007580 Simmondsia chinensis HOM05D005593 ORTHO05D006515 3.8e-06 58.2 774 21.6
Aqoxy7G01612 Aquilegia oxysepala HOM05D005593 ORTHO05D006515 5.0e-06 57.8 72 40.3
Nitab4.5_0013892g0010 Nicotiana tabacum HOM05D005593 ORTHO05D006515 5.0e-06 57.8 227 26.4
Peaxi162Scf01363g00023 Petunia axillaris HOM05D005593 ORTHO05D006515 6.5e-06 57.4 792 20.6
Phvul.002G312500 Phaseolus vulgaris HOM05D005593 ORTHO05D006515 6.5e-06 57.4 252 23.4
VMungo0464G1894 Vigna mungo HOM05D005593 ORTHO05D006515 6.5e-06 57.4 830 20.7
DCAR_012067 Daucus carota HOM05D005593 ORTHO05D006515 8.5e-06 57.0 78 39.7
TWI34G0806 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 8.5e-06 57.0 251 25.1


User provided reference genes

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