Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g107440 Medicago truncatula HOM05D004562 ORTHO05D005435 0.0e+00 2151.3 1091 100.0
TPR.G1465 Trifolium pratense HOM05D004562 ORTHO05D005435 0.0e+00 1888.2 1073 90.2
Ca_17180_v3 Cicer arietinum L. HOM05D004562 ORTHO05D005435 0.0e+00 1885.9 1093 88.3
Psat7g001240 Pisum sativum HOM05D004562 ORTHO05D005435 0.0e+00 1836.2 1093 85.5
Glyma.08G055400 Glycine max HOM05D004562 ORTHO05D005435 0.0e+00 1629.8 1093 77.7
Lj4g0011431 Lotus japonicus HOM05D004562 ORTHO05D005435 0.0e+00 1629.4 1095 77.4
Glyma.05G247000 Glycine max HOM05D004562 ORTHO05D005435 0.0e+00 1627.5 1093 77.6
Lalb_Chr09g0330331 Lupinus albus HOM05D004562 ORTHO05D005435 0.0e+00 1554.7 1094 74.7
Lalb_Chr05g0221581 Lupinus albus HOM05D004562 ORTHO05D005435 0.0e+00 1552.7 1095 74.2
VMungo0251G1597 Vigna mungo HOM05D004562 ORTHO05D005435 0.0e+00 1482.6 1092 72.0
arahy.Tifrunner.gnm1.ann1.WQ60SD Arachis hypogaea HOM05D004562 ORTHO05D005435 0.0e+00 1468.0 1092 72.0
Phvul.002G331100 Phaseolus vulgaris HOM05D004562 ORTHO05D005435 0.0e+00 1374.0 964 75.1
arahy.Tifrunner.gnm1.ann1.G227WQ Arachis hypogaea HOM05D004562 ORTHO05D005435 0.0e+00 1367.8 1092 68.2
QL10p030682 Quercus lobata HOM05D004562 ORTHO05D005435 0.0e+00 1171.8 1124 57.7
Dinv02642 Davidia involucrata HOM05D004562 ORTHO05D005435 0.0e+00 1166.8 1141 56.9
Cfa019638 Carpinus fangiana HOM05D004562 ORTHO05D005435 0.0e+00 1144.0 1136 57.1
COL.COLO4_28896 Corchorus olitorius HOM05D004562 ORTHO05D005435 0.0e+00 1141.3 1137 55.8
TWI60G0891 Tripterygium wilfordii HOM05D004562 ORTHO05D005435 0.0e+00 1139.4 1125 56.9
Gorai.008G290800 Gossypium raimondii HOM05D004562 ORTHO05D005435 0.0e+00 1119.4 1130 55.7
Ciclev10007290m.g Citrus clementina HOM05D004562 ORTHO05D005435 0.0e+00 1110.1 1136 56.0
RcHm_v2.0_Chr7g0178201 Rosa chinensis HOM05D004562 ORTHO05D005435 0.0e+00 1109.0 1136 55.6
CANSAT80G2549 Cannabis sativa HOM05D004562 ORTHO05D005435 0.0e+00 1107.4 1113 56.7
MD14G1237500 Malus domestica HOM05D004562 ORTHO05D005435 0.0e+00 1104.7 1122 56.1
FAN08G1802 Fragaria x ananassa HOM05D004562 ORTHO05D005435 0.0e+00 1083.6 1129 54.6
FvH4_5g17490 Fragaria vesca HOM05D004562 ORTHO05D005435 0.0e+00 1078.2 1128 54.8
FAN18G3714 Fragaria x ananassa HOM05D004562 ORTHO05D005435 0.0e+00 1078.2 1128 54.8
Potri.015G036300 Populus trichocarpa HOM05D004562 ORTHO05D005435 0.0e+00 1076.2 1113 54.8
MD06G1228300 Malus domestica HOM05D004562 ORTHO05D005435 7.5e-312 1073.9 1121 55.1
FAN13G2245 Fragaria x ananassa HOM05D004562 ORTHO05D005435 1.1e-310 1070.1 1129 54.3
FAN04G0449 Fragaria x ananassa HOM05D004562 ORTHO05D005435 4.3e-310 1068.1 1129 54.1
CsaV3_1G004480 Cucumis sativus L. HOM05D004562 ORTHO05D005435 6.3e-301 1037.7 1104 53.7
Sed0003970 Sechium edule HOM05D004562 ORTHO05D005435 2.4e-300 1035.8 1113 54.4
PGR044G1246 Punica granatum HOM05D004562 ORTHO05D005435 3.1e-300 1035.4 1108 53.5
Sabra15G0029800 Salix brachista HOM05D004562 ORTHO05D005435 1.5e-299 1033.1 1122 53.7
MSTRG.9309 Avicennia marina HOM05D004562 ORTHO05D005435 6.5e-298 1027.7 1149 51.7
PGSC0003DMG400005676 Solanum tuberosum HOM05D004562 ORTHO05D005435 9.3e-297 1023.8 1112 52.6
Haze_18884 Corylus avellana HOM05D004562 ORTHO05D005435 7.9e-296 1020.8 1130 53.5
Manes.06G004700 Manihot esculenta HOM05D004562 ORTHO05D005435 1.0e-295 1020.4 1099 53.7
Rhsim12G0137700 Rhododendron simsii HOM05D004562 ORTHO05D005435 1.9e-294 1016.1 1142 51.7
Eucgr.K02277 Eucalyptus grandis HOM05D004562 ORTHO05D005435 4.3e-294 1015.0 1126 52.7
Nn4g24285 Nelumbo nucifera HOM05D004562 ORTHO05D005435 4.3e-294 1015.0 1123 52.5
Sopen03g037570 Solanum pennellii HOM05D004562 ORTHO05D005435 4.3e-294 1015.0 1112 52.3
GSVIVG01008458001 Vitis vinifera HOM05D004562 ORTHO05D005435 1.8e-292 1009.6 1109 53.3
Sed0022497 Sechium edule HOM05D004562 ORTHO05D005435 3.1e-292 1008.8 1107 52.7
Solyc03g118620.3 Solanum lycopersicum HOM05D004562 ORTHO05D005435 4.1e-292 1008.4 1117 52.1
Prupe.5G234800 Prunus persica HOM05D004562 ORTHO05D005435 1.2e-291 1006.9 1007 57.1
Peaxi162Scf00314g00332 Petunia axillaris HOM05D004562 ORTHO05D005435 2.0e-291 1006.1 1123 52.2
Gohir.D12G270500 Gossypium hirsutum HOM05D004562 ORTHO05D005435 5.5e-289 998.0 990 56.8
MBI13_g01852_MAGBIO Magnolia biondii HOM05D004562 ORTHO05D005435 2.7e-288 995.7 1164 51.1
CAN.G843.49 Capsicum annuum HOM05D004562 ORTHO05D005435 7.9e-288 994.2 1112 52.2
MELO3C017375.2 Cucumis melo HOM05D004562 ORTHO05D005435 2.0e-286 989.6 1038 54.8
Thecc.03G058700 Theobroma cacao HOM05D004562 ORTHO05D005435 5.9e-283 978.0 1135 50.9
vmacro16407 Vaccinium macrocarpon HOM05D004562 ORTHO05D005435 9.4e-281 970.7 1144 50.0
Oeu026264.3 Olea europaea HOM05D004562 ORTHO05D005435 8.8e-279 964.1 1187 48.4
ClCG06G014190 Citrullus lanatus HOM05D004562 ORTHO05D005435 2.0e-278 963.0 1103 51.6
THA.LOC104820345 Tarenaya hassleriana HOM05D004562 ORTHO05D005435 1.7e-277 959.9 1123 50.8
Cc04_g06100 Coffea canephora HOM05D004562 ORTHO05D005435 2.8e-277 959.1 1093 52.0
Aqoxy3G00029 Aquilegia oxysepala HOM05D004562 ORTHO05D005435 1.8e-276 956.4 1139 49.9
Duzib205G1225 Durio zibethinus HOM05D004562 ORTHO05D005435 1.6e-275 953.4 1140 50.1
Actinidia35140 Actinidia chinensis HOM05D004562 ORTHO05D005435 7.7e-275 951.0 1150 49.1
Gohir.A12G270000 Gossypium hirsutum HOM05D004562 ORTHO05D005435 6.5e-274 948.0 961 55.8
CiPaw.15G144500 Carya illinoinensis HOM05D004562 ORTHO05D005435 2.7e-272 942.6 941 56.9
Nn3g18314 Nelumbo nucifera HOM05D004562 ORTHO05D005435 6.1e-272 941.4 1188 47.3
AUR62029906 Chenopodium quinoa HOM05D004562 ORTHO05D005435 3.2e-265 919.1 1120 49.1
Thhalv10019973m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 2.7e-264 916.0 1112 48.5
AL1G55180 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 3.0e-263 912.5 1106 49.3
CARHR038150 Cardamine hirsuta HOM05D004562 ORTHO05D005435 3.4e-262 909.1 1104 48.6
AUR62033795 Chenopodium quinoa HOM05D004562 ORTHO05D005435 5.7e-262 908.3 1123 48.6
PSO478G3379 Papaver somniferum HOM05D004562 ORTHO05D005435 9.8e-262 907.5 1128 49.6
Sp3g16040 Schrenkiella parvula HOM05D004562 ORTHO05D005435 2.2e-261 906.4 1107 48.2
C06p03060 Brassica napus HOM05D004562 ORTHO05D005435 2.4e-260 902.9 1107 49.2
BcaC08g43044 Brassica carinata HOM05D004562 ORTHO05D005435 5.4e-260 901.7 1107 49.2
Sp1g35480 Schrenkiella parvula HOM05D004562 ORTHO05D005435 2.7e-259 899.4 1103 48.8
BolC6t35426H Brassica oleracea HOM05D004562 ORTHO05D005435 4.5e-259 898.7 1108 49.5
EL10Ac8g19501 Beta vulgaris HOM05D004562 ORTHO05D005435 5.9e-259 898.3 1105 48.7
Carub.0001s3765 Capsella rubella HOM05D004562 ORTHO05D005435 1.0e-258 897.5 1116 47.8
Aa31LG10G5260 Aethionema arabicum HOM05D004562 ORTHO05D005435 1.7e-258 896.7 1144 48.3
Carub.0003s1765 Capsella rubella HOM05D004562 ORTHO05D005435 8.6e-258 894.4 1108 48.4
A06p04420 Brassica napus HOM05D004562 ORTHO05D005435 3.3e-257 892.5 1103 49.2
AL3G31090 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 1.6e-256 890.2 1120 48.0
BcaB07g33749 Brassica carinata HOM05D004562 ORTHO05D005435 3.6e-256 889.0 1102 48.2
HanXRQChr09g0268071 Helianthus annuus HOM05D004562 ORTHO05D005435 8.0e-256 887.9 1102 48.2
AT1G48540 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 4.0e-255 885.6 1035 49.7
BcaB06g25854 Brassica carinata HOM05D004562 ORTHO05D005435 5.2e-255 885.2 1109 47.4
BcaC05g28736 Brassica carinata HOM05D004562 ORTHO05D005435 5.7e-254 881.7 1109 47.4
BolC5t33574H Brassica oleracea HOM05D004562 ORTHO05D005435 5.7e-254 881.7 1109 47.4
BraA05t22020Z Brassica rapa HOM05D004562 ORTHO05D005435 5.7e-254 881.7 1107 47.7
A05p31880 Brassica napus HOM05D004562 ORTHO05D005435 9.8e-254 880.9 1109 47.6
Thhalv10011201m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 1.3e-253 880.6 1125 47.6
Sc12g0007950 Simmondsia chinensis HOM05D004562 ORTHO05D005435 2.2e-253 879.8 1106 48.6
BraA06t23647Z Brassica rapa HOM05D004562 ORTHO05D005435 1.4e-252 877.1 1145 47.1
AT3G17920 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 1.8e-252 876.7 1108 48.1
C05p48370 Brassica napus HOM05D004562 ORTHO05D005435 2.4e-252 876.3 1109 47.2
CiPaw.16G096100 Carya illinoinensis HOM05D004562 ORTHO05D005435 1.6e-251 873.6 877 57.9
DCAR_011617 Daucus carota HOM05D004562 ORTHO05D005435 5.9e-251 871.7 1120 46.4
Lsat_1_v5_gn_2_14940 Lactuca sativa HOM05D004562 ORTHO05D005435 1.0e-250 870.9 1095 48.4
Ah.14g085940 Amaranthus hybridus HOM05D004562 ORTHO05D005435 9.5e-249 864.4 1107 48.1
PSO017G6436 Papaver somniferum HOM05D004562 ORTHO05D005435 1.4e-247 860.5 1128 48.0
Lj5A159T41 Lonicera japonica HOM05D004562 ORTHO05D005435 7.0e-244 848.2 1164 46.0
ATR0753G019 Amborella trichopoda HOM05D004562 ORTHO05D005435 2.7e-243 846.3 1148 46.2
ECA238G1924 Erigeron canadensis HOM05D004562 ORTHO05D005435 1.0e-242 844.3 1125 46.3
Aa31LG8G4790 Aethionema arabicum HOM05D004562 ORTHO05D005435 1.3e-242 844.0 1103 46.5
HanXRQChr02g0032401 Helianthus annuus HOM05D004562 ORTHO05D005435 4.7e-240 835.5 1107 46.5
Gorai.005G132200 Gossypium raimondii HOM05D004562 ORTHO05D005435 1.3e-234 817.4 702 63.5
Gohir.D02G121900 Gossypium hirsutum HOM05D004562 ORTHO05D005435 5.6e-233 812.0 702 63.2
TAR374G0462 Trochodendron aralioides HOM05D004562 ORTHO05D005435 8.1e-224 781.6 670 64.2
HPP92_016742 Vanilla planifolia HOM05D004562 ORTHO05D005435 5.2e-223 778.9 1129 43.1
CSS0019251 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.2e-219 767.7 657 64.1
Migut.D01318 Erythranthe guttata HOM05D004562 ORTHO05D005435 1.2e-219 767.7 773 57.1
Atru.chr9.1669 Acer truncatum HOM05D004562 ORTHO05D005435 4.6e-219 765.8 891 51.4
SalBow1G2489 Salvia bowleyana HOM05D004562 ORTHO05D005435 1.2e-211 741.1 659 61.9
SGA_v2.0_scaffold172G39021 Striga asiatica HOM05D004562 ORTHO05D005435 2.1e-211 740.3 775 54.5
Potri.012G045300 Populus trichocarpa HOM05D004562 ORTHO05D005435 5.8e-206 722.2 506 73.3
Manes.14G172200 Manihot esculenta HOM05D004562 ORTHO05D005435 2.8e-200 703.4 885 48.7
Zm00001eb008950 Zea mays HOM05D004562 ORTHO05D005435 1.4e-199 701.0 1126 40.9
CARHR093250 Cardamine hirsuta HOM05D004562 ORTHO05D005435 6.9e-199 698.7 853 49.9
Os03g0221800 Oryza sativa ssp. japonica HOM05D004562 ORTHO05D005435 2.6e-198 696.8 1141 40.8
Nitab4.5_0001264g0030 Nicotiana tabacum HOM05D004562 ORTHO05D005435 9.9e-198 694.9 562 66.4
Hund22308 Selenicereus undatus HOM05D004562 ORTHO05D005435 9.6e-193 678.3 854 49.4
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 1.7e-189 667.5 861 47.6
Nitab4.5_0010397g0020 Nicotiana tabacum HOM05D004562 ORTHO05D005435 3.2e-188 663.3 444 74.8
Cpa.g.sc3.379 Carica papaya HOM05D004562 ORTHO05D005435 3.5e-187 659.8 644 58.9
Sabra12G0031500 Salix brachista HOM05D004562 ORTHO05D005435 3.7e-184 649.8 965 44.1
CDE05G0309 Ceratophyllum demersum HOM05D004562 ORTHO05D005435 2.5e-180 637.1 1121 39.6
unitig_46.g18720 Utricularia gibba HOM05D004562 ORTHO05D005435 2.0e-174 617.5 652 55.1
SEGI_15130 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 8.0e-155 552.4 704 48.3
CSS0009282 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.1e-127 462.2 268 86.6
CSS0039239 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.1e-127 462.2 268 86.6
Pp3c10_10590 Physcomitrium patens HOM05D004562 ORTHO05D005435 1.4e-127 461.8 674 42.3
Mapoly0118s0042 Marchantia polymorpha HOM05D004562 ORTHO05D005435 2.1e-118 431.4 696 39.7
Hma1.2p1_0163F.1_g072990 Hydrangea macrophylla HOM05D004562 ORTHO05D005435 1.5e-116 425.2 719 41.4
Gohir.A03G092940 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.5e-113 415.2 444 54.7
AagrBONN_evm.TU.Sc2ySwM_228.5527 Anthoceros agrestis HOM05D004562 ORTHO05D005435 3.1e-98 364.4 328 55.2
CSS0012259 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 6.9e-98 363.2 597 42.2
CSS0042944 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.5e-97 362.1 597 42.0
Gohir.A03G092980 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.9e-95 355.1 206 85.9
Duzib084G0184 Durio zibethinus HOM05D004562 ORTHO05D005435 5.5e-71 273.9 611 35.7
CBR_g38780 Chara braunii HOM05D004562 ORTHO05D005435 1.8e-61 242.3 229 54.1
SHI19076 Sapria himalayana HOM05D004562 ORTHO05D005435 1.2e-54 219.5 142 78.9
AUR62044432 Chenopodium quinoa HOM05D004562 ORTHO05D005435 3.9e-53 214.5 668 31.1
SEGI_31258 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 4.7e-46 191.0 781 28.7
SHI19074 Sapria himalayana HOM05D004562 ORTHO05D005435 2.6e-41 175.3 134 67.2
CAN.G59.9 Capsicum annuum HOM05D004562 ORTHO05D005435 1.0e-40 173.3 172 56.4
CAN.G1490.14 Capsicum annuum HOM05D004562 ORTHO05D005435 6.1e-38 164.1 91 89.0
SHI19075 Sapria himalayana HOM05D004562 ORTHO05D005435 2.4e-34 152.1 91 79.1
CAN.G1687.2 Capsicum annuum HOM05D004562 ORTHO05D005435 2.0e-33 149.1 159 56.0
TAR374G0732 Trochodendron aralioides HOM05D004562 ORTHO05D005435 8.8e-29 133.7 180 41.7
MCO11G516 Micromonas commoda HOM05D004562 ORTHO05D005435 2.6e-20 105.5 388 28.1
CAN.G22.26 Capsicum annuum HOM05D001423 ORTHO05D001412 8.3e-19 100.5 67 67.2
C03p70010 Brassica napus HOM05D004562 ORTHO05D005435 2.3e-13 82.4 114 38.6
BolC3t19259H Brassica oleracea HOM05D004562 ORTHO05D005435 4.1e-10 71.6 111 36.0
C09p22450 Brassica napus HOM05D004562 ORTHO05D005435 3.5e-09 68.6 121 34.7
BolC9t55163H Brassica oleracea HOM05D004562 ORTHO05D005435 6.0e-09 67.8 110 36.4
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 3.0e-08 65.5 228 29.4
Cpa.g.sc3.375 Carica papaya HOM05D000419 ORTHO05D000692 3.0e-08 65.5 126 34.1
SHI19073 Sapria himalayana HOM05D004562 ORTHO05D005435 3.9e-08 65.1 387 25.8
Mapoly0105s0058 Marchantia polymorpha HOM05D027721 ORTHO05D031191 2.5e-07 62.4 210 25.7


User provided reference genes

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