Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g107320 Medicago truncatula HOM05D000439 ORTHO05D002302 1.2e-107 393.3 214 100.0
Medtr2g103640 Medicago truncatula HOM05D000439 ORTHO05D002302 1.8e-26 123.6 169 48.5
TPR.G20709 Trifolium pratense HOM05D000439 ORTHO05D002302 3.1e-26 122.9 131 55.7
TPR.G11588 Trifolium pratense HOM05D000439 ORTHO05D002302 2.0e-25 120.2 128 54.7
Medtr2g091105 Medicago truncatula HOM05D000439 ORTHO05D002302 4.4e-25 119.0 135 53.3
Medtr2g103620 Medicago truncatula HOM05D000439 ORTHO05D002302 7.5e-25 118.2 208 44.7
TPR.G20713 Trifolium pratense HOM05D000439 ORTHO05D002302 9.8e-25 117.9 137 56.2
Medtr2g091260 Medicago truncatula HOM05D000439 ORTHO05D002302 1.3e-24 117.5 115 55.7
TPR.G11525 Trifolium pratense HOM05D000439 ORTHO05D002302 1.7e-24 117.1 129 53.5
Medtr2g091030 Medicago truncatula HOM05D000439 ORTHO05D002302 3.7e-24 115.9 165 49.1
Medtr2g091335 Medicago truncatula HOM05D000439 ORTHO05D002302 1.1e-23 114.4 130 55.4
TPR.G22517 Trifolium pratense HOM05D000439 ORTHO05D002302 1.9e-23 113.6 129 52.7
TPR.G20714 Trifolium pratense HOM05D000439 ORTHO05D002302 2.4e-23 113.2 121 58.7
Medtr5g038810 Medicago truncatula HOM05D000439 ORTHO05D002302 4.1e-23 112.5 153 49.0
Psat5g276000 Pisum sativum HOM05D000439 ORTHO05D002302 4.1e-23 112.5 119 55.5
TPR.G20706 Trifolium pratense HOM05D000439 ORTHO05D002302 7.1e-23 111.7 110 58.2
Psat0s1858g0280 Pisum sativum HOM05D000439 ORTHO05D002302 9.2e-23 111.3 154 47.4
TPR.G20707 Trifolium pratense HOM05D000439 ORTHO05D002302 9.2e-23 111.3 110 57.3
Medtr2g091285 Medicago truncatula HOM05D000439 ORTHO05D002302 1.2e-22 110.9 126 54.8
Medtr2g091080 Medicago truncatula HOM05D000439 ORTHO05D002302 1.6e-22 110.5 103 62.1
Medtr2g091110 Medicago truncatula HOM05D000439 ORTHO05D002302 2.1e-22 110.2 95 63.2
TPR.G11624 Trifolium pratense HOM05D000439 ORTHO05D002302 3.5e-22 109.4 118 55.9
TPR.G8900 Trifolium pratense HOM05D000439 ORTHO05D002302 4.6e-22 109.0 86 68.6
TPR.G32660 Trifolium pratense HOM05D000439 ORTHO05D002302 1.7e-21 107.1 127 51.2
Ca_01454_v3 Cicer arietinum L. HOM05D000439 ORTHO05D002302 3.0e-21 106.3 195 38.5
Medtr5g078510 Medicago truncatula HOM05D000439 ORTHO05D002302 3.0e-21 106.3 85 68.2
Medtr2g090980 Medicago truncatula HOM05D000439 ORTHO05D002302 5.1e-21 105.5 118 55.9
TPR.G20710 Trifolium pratense HOM05D000439 ORTHO05D002302 6.6e-21 105.1 110 53.6
Medtr2g091090 Medicago truncatula HOM05D000439 ORTHO05D002302 8.6e-21 104.8 85 65.9
TPR.G11570 Trifolium pratense HOM05D000439 ORTHO05D002302 8.6e-21 104.8 147 46.9
Medtr2g091245 Medicago truncatula HOM05D000439 ORTHO05D002302 1.9e-20 103.6 85 63.5
Medtr2g104190 Medicago truncatula HOM05D000439 ORTHO05D002302 1.9e-20 103.6 90 62.2
Medtr6g045183 Medicago truncatula HOM05D000439 ORTHO05D002302 3.3e-20 102.8 112 53.6
Medtr2g091240 Medicago truncatula HOM05D000439 ORTHO05D002302 7.3e-20 101.7 110 51.8
Lj3g0018169 Lotus japonicus HOM05D000439 ORTHO05D002302 9.5e-20 101.3 110 52.7
TPR.G33824 Trifolium pratense HOM05D000439 ORTHO05D002302 1.2e-19 100.9 110 53.6
Medtr2g091250 Medicago truncatula HOM05D000439 ORTHO05D002302 3.6e-19 99.4 110 52.7
Medtr2g091370 Medicago truncatula HOM05D000439 ORTHO05D002302 3.6e-19 99.4 134 45.5
arahy.Tifrunner.gnm1.ann1.824BKL Arachis hypogaea HOM05D000439 ORTHO05D002302 1.8e-18 97.1 186 40.3
Lj4g0018346 Lotus japonicus HOM05D000439 ORTHO05D002302 2.3e-18 96.7 107 51.4
Medtr2g010420 Medicago truncatula HOM05D000439 ORTHO05D002302 2.3e-18 96.7 173 38.7
TPR.G11256 Trifolium pratense HOM05D000439 ORTHO05D002302 2.3e-18 96.7 117 53.8
Medtr2g091290 Medicago truncatula HOM05D000439 ORTHO05D002302 3.1e-18 96.3 131 45.8
TPR.G12457 Trifolium pratense HOM05D000439 ORTHO05D002302 3.1e-18 96.3 124 48.4
arahy.Tifrunner.gnm1.ann1.825KYQ Arachis hypogaea HOM05D000439 ORTHO05D002302 4.0e-18 95.9 109 52.3
Medtr3g110385 Medicago truncatula HOM05D000439 ORTHO05D002302 4.0e-18 95.9 96 55.2
arahy.Tifrunner.gnm1.ann1.5F1FKW Arachis hypogaea HOM05D000439 ORTHO05D002302 5.2e-18 95.5 110 50.9
Ca_20059_v3 Cicer arietinum L. HOM05D000439 ORTHO05D002302 6.8e-18 95.1 106 53.8
Glyma.12G015800 Glycine max HOM05D000439 ORTHO05D002302 8.9e-18 94.7 133 42.9
arahy.Tifrunner.gnm1.ann1.Z2T2IJ Arachis hypogaea HOM05D000439 ORTHO05D002302 1.2e-17 94.4 110 50.0
TPR.G11522 Trifolium pratense HOM05D000439 ORTHO05D002302 2.0e-17 93.6 85 58.8
Psat5g275960 Pisum sativum HOM05D000439 ORTHO05D002302 4.4e-17 92.4 110 50.0
Lalb_Chr01g0000841 Lupinus albus HOM05D000439 ORTHO05D002302 5.8e-17 92.0 112 51.8
arahy.Tifrunner.gnm1.ann1.4R5PNE Arachis hypogaea HOM05D008486 ORTHO05D010657 7.6e-17 91.7 110 49.1
arahy.Tifrunner.gnm1.ann1.BZ4NKF Arachis hypogaea HOM05D008486 ORTHO05D010657 7.6e-17 91.7 110 49.1
Medtr2g091070 Medicago truncatula HOM05D000439 ORTHO05D002302 7.6e-17 91.7 110 52.7
Medtr2g091025 Medicago truncatula HOM05D000439 ORTHO05D002302 1.3e-16 90.9 178 38.2
Glyma.11G109500 Glycine max HOM05D000439 ORTHO05D002302 4.9e-16 89.0 85 55.3
arahy.Tifrunner.gnm1.ann1.MSPK7M Arachis hypogaea HOM05D000439 ORTHO05D002302 6.4e-16 88.6 195 37.4
Psat5g276040 Pisum sativum HOM05D000439 ORTHO05D002302 1.1e-15 87.8 110 51.8
Medtr7g056317 Medicago truncatula HOM05D000439 ORTHO05D002302 1.9e-15 87.0 71 69.0
Lj1g0021649 Lotus japonicus HOM05D000439 ORTHO05D002302 3.5e-14 82.8 88 52.3
Lalb_Chr14g0367481 Lupinus albus HOM05D000439 ORTHO05D002302 1.0e-13 81.3 132 39.4
Medtr2g091015 Medicago truncatula HOM05D000439 ORTHO05D002302 1.0e-13 81.3 165 41.2
Medtr8g467200 Medicago truncatula HOM05D000439 ORTHO05D002302 1.7e-13 80.5 87 55.2
Lj3g0018557 Lotus japonicus HOM05D000439 ORTHO05D002302 6.6e-13 78.6 130 43.1
Rhsim07G0176800 Rhododendron simsii HOM05D000439 ORTHO05D002302 4.3e-12 75.9 83 48.2
Medtr4g046660 Medicago truncatula HOM05D000439 ORTHO05D002302 7.3e-12 75.1 104 47.1
TPR.G8353 Trifolium pratense HOM05D000439 ORTHO05D002302 7.3e-12 75.1 108 47.2
CiPaw.07G010900 Carya illinoinensis HOM05D000439 ORTHO05D001363 9.6e-12 74.7 75 57.3
CSS0004188 Camellia sinensis var. sinensis HOM05D000439 ORTHO05D002302 2.1e-11 73.6 73 52.1
CSS0048396 Camellia sinensis var. sinensis HOM05D000439 ORTHO05D002302 2.1e-11 73.6 73 52.1
Haze_04289 Corylus avellana HOM05D000439 ORTHO05D002302 1.1e-10 71.2 86 46.5
Medtr8g106540 Medicago truncatula HOM05D000439 ORTHO05D002302 1.8e-10 70.5 62 58.1
vmacro05061 Vaccinium macrocarpon HOM05D000439 ORTHO05D002302 2.4e-10 70.1 80 47.5
Cfa006500 Carpinus fangiana HOM05D000439 ORTHO05D002302 5.2e-10 68.9 86 46.5
arahy.Tifrunner.gnm1.ann1.8T23IY Arachis hypogaea HOM05D000439 ORTHO05D002302 1.2e-09 67.8 86 44.2
arahy.Tifrunner.gnm1.ann1.9L902K Arachis hypogaea HOM05D000439 ORTHO05D002302 1.2e-09 67.8 89 43.8
Manes.09G160800 Manihot esculenta HOM05D000439 ORTHO05D012413 1.2e-09 67.8 80 45.0
Nitab4.5_0007864g0010 Nicotiana tabacum HOM05D000439 ORTHO05D002302 1.2e-09 67.8 96 37.5
Nitab4.5_0012670g0010 Nicotiana tabacum HOM05D000439 ORTHO05D036904 1.2e-09 67.8 96 37.5
CSS0036023 Camellia sinensis var. sinensis HOM05D000439 ORTHO05D002302 1.5e-09 67.4 75 48.0
CiPaw.07G011500 Carya illinoinensis HOM05D000439 ORTHO05D002302 2.0e-09 67.0 79 46.8
Dinv26587 Davidia involucrata HOM05D000439 ORTHO05D002302 2.0e-09 67.0 91 40.7
QL03p001257 Quercus lobata HOM05D000439 ORTHO05D002302 2.0e-09 67.0 66 57.6
FAN04G2682 Fragaria x ananassa HOM05D000439 ORTHO05D002302 2.6e-09 66.6 117 35.0
QL03p002685 Quercus lobata HOM05D000439 ORTHO05D002302 4.4e-09 65.9 83 44.6
Nitab4.5_0001453g0030 Nicotiana tabacum HOM05D000439 ORTHO05D002302 5.8e-09 65.5 77 42.9
QL03p000917 Quercus lobata HOM05D000439 ORTHO05D002302 5.8e-09 65.5 66 56.1
Sed0021572 Sechium edule HOM05D000439 ORTHO05D002302 5.8e-09 65.5 101 38.6
COL.COLO4_36068 Corchorus olitorius HOM05D000439 ORTHO05D001363 7.6e-09 65.1 81 44.4
CsaV3_2G016580 Cucumis sativus L. HOM05D000439 ORTHO05D002302 9.9e-09 64.7 73 45.2
QL03p002736 Quercus lobata HOM05D000439 ORTHO05D002302 9.9e-09 64.7 80 40.0
Medtr2g093010 Medicago truncatula HOM05D000439 ORTHO05D002302 1.3e-08 64.3 130 37.7
RcHm_v2.0_Chr7g0205851 Rosa chinensis HOM05D000439 ORTHO05D002302 1.7e-08 63.9 80 41.2
Prupe.6G334900 Prunus persica HOM05D000439 ORTHO05D002302 2.2e-08 63.5 81 42.0
Thecc.05G251700 Theobroma cacao HOM05D000439 ORTHO05D002302 2.2e-08 63.5 76 38.2
ClCG02G012450 Citrullus lanatus HOM05D000439 ORTHO05D002302 2.9e-08 63.2 73 46.6
FAN13G3290 Fragaria x ananassa HOM05D000439 ORTHO05D002302 2.9e-08 63.2 118 36.4
TWI56G0175 Tripterygium wilfordii HOM05D000439 ORTHO05D002302 2.9e-08 63.2 92 39.1
FvH4_5g20491 Fragaria vesca HOM05D000439 ORTHO05D002302 3.8e-08 62.8 118 35.6
FAN18G3868 Fragaria x ananassa HOM05D000439 ORTHO05D002302 3.8e-08 62.8 118 35.6
Nitab4.5_0004296g0020 Nicotiana tabacum HOM05D000439 ORTHO05D002302 3.8e-08 62.8 77 41.6
MELO3C020867.2 Cucumis melo HOM05D000439 ORTHO05D002302 4.9e-08 62.4 73 43.8
Gohir.A13G100400 Gossypium hirsutum HOM05D000439 ORTHO05D002302 4.9e-08 62.4 75 38.7
MD04G1214600 Malus domestica HOM05D000439 ORTHO05D002302 4.9e-08 62.4 75 44.0
TAR629G2317 Trochodendron aralioides HOM05D000439 ORTHO05D001363 4.9e-08 62.4 78 47.4
Gohir.D13G104000 Gossypium hirsutum HOM05D000439 ORTHO05D002302 6.4e-08 62.0 75 38.7
Nitab4.5_0000245g0140 Nicotiana tabacum HOM05D000439 ORTHO05D002302 6.4e-08 62.0 80 45.0
Nitab4.5_0001165g0170 Nicotiana tabacum HOM05D000439 ORTHO05D001363 6.4e-08 62.0 80 45.0
Potri.005G044200 Populus trichocarpa HOM05D000439 ORTHO05D002302 6.4e-08 62.0 80 40.0
SGA_v2.0_scaffold1G00620 Striga asiatica HOM05D000439 ORTHO05D002302 6.4e-08 62.0 77 41.6
Manes.09G160601 Manihot esculenta HOM05D000439 ORTHO05D002302 1.1e-07 61.2 140 30.7
MSTRG.21492 Avicennia marina HOM05D000439 ORTHO05D002302 1.4e-07 60.8 75 45.3
CANSAT54G1104 Cannabis sativa HOM05D000439 ORTHO05D002302 1.4e-07 60.8 86 46.5
Lj7C482G14 Lonicera japonica HOM05D000439 ORTHO05D002302 1.4e-07 60.8 93 38.7
Rhsim01G0002600 Rhododendron simsii HOM05D000439 ORTHO05D001363 1.4e-07 60.8 81 40.7
RcHm_v2.0_Chr4g0411451 Rosa chinensis HOM05D000439 ORTHO05D002302 1.4e-07 60.8 76 43.4
Migut.D00431 Erythranthe guttata HOM05D000439 ORTHO05D002302 1.9e-07 60.5 80 41.2
Migut.D00433 Erythranthe guttata HOM05D000439 ORTHO05D002302 1.9e-07 60.5 75 44.0
Atru.chr2.611 Acer truncatum HOM05D000439 ORTHO05D002302 2.4e-07 60.1 80 37.5
Duzib106G1037 Durio zibethinus HOM05D000439 ORTHO05D002302 2.4e-07 60.1 76 34.2
Gohir.A11G236340 Gossypium hirsutum HOM05D000439 ORTHO05D002302 2.4e-07 60.1 74 47.3
Gorai.013G116600 Gossypium raimondii HOM05D000439 ORTHO05D002302 2.4e-07 60.1 75 37.3
QL03p002724 Quercus lobata HOM05D000439 ORTHO05D002302 3.2e-07 59.7 71 42.3
Ciclev10000552m.g Citrus clementina HOM05D000439 ORTHO05D002302 4.2e-07 59.3 93 38.7
FvH4_6g04261 Fragaria vesca HOM05D000439 ORTHO05D002302 4.2e-07 59.3 82 41.5
FAN14G4802 Fragaria x ananassa HOM05D000439 ORTHO05D002302 4.2e-07 59.3 82 41.5
Prupe.6G334200 Prunus persica HOM05D000439 ORTHO05D002302 4.2e-07 59.3 76 36.8
RcHm_v2.0_Chr3g0452981 Rosa chinensis HOM05D000439 ORTHO05D002302 4.2e-07 59.3 75 36.0
TWI56G0825 Tripterygium wilfordii HOM05D000160 ORTHO05D000914 4.2e-07 59.3 80 43.8
FAN05G1097 Fragaria x ananassa HOM05D004471 ORTHO05D005345 5.4e-07 58.9 82 41.5
FAN09G0983 Fragaria x ananassa HOM05D000439 ORTHO05D002302 5.4e-07 58.9 82 36.6
FAN09G3873 Fragaria x ananassa HOM05D000439 ORTHO05D002302 5.4e-07 58.9 82 36.6
Gorai.007G263000 Gossypium raimondii HOM05D000439 ORTHO05D001363 5.4e-07 58.9 74 45.9
Actinidia05745 Actinidia chinensis HOM05D000439 ORTHO05D002302 7.1e-07 58.5 73 42.5
Gorai.007G262900 Gossypium raimondii HOM05D000439 ORTHO05D002302 7.1e-07 58.5 74 44.6
Lj9P676T52 Lonicera japonica HOM05D000439 ORTHO05D002302 7.1e-07 58.5 95 37.9
Duzib177G0767 Durio zibethinus HOM05D000439 ORTHO05D002302 9.3e-07 58.2 74 43.2
Eucgr.B01769 Eucalyptus grandis HOM05D000439 ORTHO05D002302 9.3e-07 58.2 80 41.2
FAN05G1628 Fragaria x ananassa HOM05D000439 ORTHO05D002302 9.3e-07 58.2 82 41.5
Gohir.D11G246880 Gossypium hirsutum HOM05D000160 ORTHO05D002302 9.3e-07 58.2 74 45.9
RcHm_v2.0_Chr3g0452971 Rosa chinensis HOM05D000439 ORTHO05D002302 9.3e-07 58.2 82 40.2
Migut.E00855 Erythranthe guttata HOM05D000439 ORTHO05D002302 1.2e-06 57.8 118 33.1
Gohir.A11G236300 Gossypium hirsutum HOM05D000439 ORTHO05D002302 1.2e-06 57.8 74 44.6
PSO675G0680 Papaver somniferum HOM05D000439 ORTHO05D001363 1.2e-06 57.8 78 38.5
AUR62002306 Chenopodium quinoa HOM05D000439 ORTHO05D002302 1.6e-06 57.4 94 31.9
Migut.E00749 Erythranthe guttata HOM05D000439 ORTHO05D002302 1.6e-06 57.4 185 29.7
Peaxi162Scf00225g00521 Petunia axillaris HOM05D000439 ORTHO05D002302 1.6e-06 57.4 93 44.1
RcHm_v2.0_Chr3g0452961 Rosa chinensis HOM05D012224 ORTHO05D017959 1.6e-06 57.4 82 42.7
SalBow4G2078 Salvia bowleyana HOM05D000439 ORTHO05D002302 1.6e-06 57.4 190 31.1
vmacro05059 Vaccinium macrocarpon HOM05D000439 ORTHO05D001363 1.6e-06 57.4 112 34.8
MSTRG.18325 Avicennia marina HOM05D000439 ORTHO05D002302 2.1e-06 57.0 75 44.0
Ciclev10003722m.g Citrus clementina HOM05D000439 ORTHO05D002302 2.1e-06 57.0 81 42.0
Gohir.D11G246820 Gossypium hirsutum HOM05D000439 ORTHO05D002302 2.1e-06 57.0 74 43.2
Prupe.6G334700 Prunus persica HOM05D000439 ORTHO05D002302 2.1e-06 57.0 81 37.0
Sabra05G0041000 Salix brachista HOM05D000439 ORTHO05D002302 2.1e-06 57.0 93 34.4
TAR627G0997 Trochodendron aralioides HOM05D000439 ORTHO05D001363 2.1e-06 57.0 71 45.1
Ciclev10003673m.g Citrus clementina HOM05D000439 ORTHO05D002302 2.7e-06 56.6 81 43.2
FvH4_6g04310 Fragaria vesca HOM05D000439 ORTHO05D002302 2.7e-06 56.6 75 36.0
MD03G1060500 Malus domestica HOM05D000439 ORTHO05D002302 2.7e-06 56.6 113 34.5
Prupe.6G334600 Prunus persica HOM05D000439 ORTHO05D002302 2.7e-06 56.6 76 39.5
AUR62015384 Chenopodium quinoa HOM05D000439 ORTHO05D002302 3.5e-06 56.2 94 31.9
MD04G1214300 Malus domestica HOM05D000439 ORTHO05D002302 3.5e-06 56.2 74 36.5
Potri.005G043900 Populus trichocarpa HOM05D000439 ORTHO05D002302 3.5e-06 56.2 93 34.4
Ciclev10003235m.g Citrus clementina HOM05D000439 ORTHO05D002302 4.6e-06 55.8 81 43.2
PSO541G3778 Papaver somniferum HOM05D000439 ORTHO05D001363 4.6e-06 55.8 78 38.5
CAN.G134.216 Capsicum annuum HOM05D000439 ORTHO05D002302 6.0e-06 55.5 85 41.2
Ciclev10000115m.g Citrus clementina HOM05D000439 ORTHO05D002302 6.0e-06 55.5 81 44.4
Ciclev10000734m.g Citrus clementina HOM05D000439 ORTHO05D002302 6.0e-06 55.5 80 46.2
Duzib106G2048 Durio zibethinus HOM05D000439 ORTHO05D002302 6.0e-06 55.5 81 35.8
FvH4_6g04390 Fragaria vesca HOM05D000439 ORTHO05D002302 6.0e-06 55.5 82 35.4
FAN05G4994 Fragaria x ananassa HOM05D000439 ORTHO05D002302 6.0e-06 55.5 82 35.4
MD04G1214400 Malus domestica HOM05D000439 ORTHO05D002302 6.0e-06 55.5 81 37.0
Prupe.1G243600 Prunus persica HOM05D000439 ORTHO05D002302 6.0e-06 55.5 81 39.5
RcHm_v2.0_Chr3g0453001 Rosa chinensis HOM05D000439 ORTHO05D002302 6.0e-06 55.5 88 40.9
RcHm_v2.0_Chr3g0453081 Rosa chinensis HOM05D000439 ORTHO05D002302 6.0e-06 55.5 112 35.7
Potri.005G044000 Populus trichocarpa HOM05D000439 ORTHO05D002302 7.8e-06 55.1 93 32.3
PGSC0003DMG400022488 Solanum tuberosum HOM05D000439 ORTHO05D002302 7.8e-06 55.1 80 41.2
GSVIVG01008593001 Vitis vinifera HOM05D000439 ORTHO05D001363 7.8e-06 55.1 94 38.3


User provided reference genes

Program Settings