Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g106780 Medicago truncatula HOM05D002209 ORTHO05D004761 4.4e-217 757.7 387 100.0
TPR.G12929 Trifolium pratense HOM05D002209 ORTHO05D004761 7.9e-182 640.6 363 89.3
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 6.5e-160 567.8 346 83.8
Lj4g0012439 Lotus japonicus HOM05D002209 ORTHO05D004761 4.7e-158 561.6 368 76.9
Glyma.05G243700 Glycine max HOM05D002209 ORTHO05D004761 2.1e-150 536.2 366 75.7
Glyma.08G051500 Glycine max HOM05D002209 ORTHO05D004761 6.7e-149 531.2 369 74.3
Phvul.002G327400 Phaseolus vulgaris HOM05D002209 ORTHO05D004761 3.7e-147 525.4 367 74.1
Lalb_Chr16g0387141 Lupinus albus HOM05D002209 ORTHO05D004761 1.7e-144 516.5 369 72.1
VMungo0251G1482 Vigna mungo HOM05D002209 ORTHO05D004761 5.0e-144 515.0 368 73.1
Lalb_Chr09g0330521 Lupinus albus HOM05D002209 ORTHO05D004761 8.5e-144 514.2 371 70.9
Psat7g003880 Pisum sativum HOM05D002209 ORTHO05D004761 7.2e-143 511.1 305 86.6
Lalb_Chr05g0221871 Lupinus albus HOM05D002209 ORTHO05D004761 2.0e-140 503.1 372 69.6
arahy.Tifrunner.gnm1.ann1.6WJC3X Arachis hypogaea HOM05D002209 ORTHO05D004761 1.1e-138 497.3 405 65.2
GSVIVG01008394001 Vitis vinifera HOM05D002209 ORTHO05D004761 1.6e-121 440.3 372 62.9
Duzib084G0729 Durio zibethinus HOM05D002209 ORTHO05D004761 4.6e-121 438.7 371 60.9
Thecc.03G048800 Theobroma cacao HOM05D002209 ORTHO05D004761 1.3e-120 437.2 371 60.6
Gohir.A09G051300 Gossypium hirsutum HOM05D002209 ORTHO05D004761 2.3e-120 436.4 370 60.3
Gohir.D09G052400 Gossypium hirsutum HOM05D002209 ORTHO05D004761 1.9e-119 433.3 370 59.7
Gorai.006G057200 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.9e-119 433.3 370 59.7
Duzib205G0470 Durio zibethinus HOM05D002209 ORTHO05D004761 3.3e-119 432.6 371 59.8
PGR083G2774 Punica granatum HOM05D002209 ORTHO05D004761 5.6e-119 431.8 368 61.4
COL.COLO4_05870 Corchorus olitorius HOM05D002209 ORTHO05D004761 7.3e-119 431.4 370 59.7
Dinv29939 Davidia involucrata HOM05D002209 ORTHO05D004761 9.5e-119 431.0 367 60.5
Lj9A421T102 Lonicera japonica HOM05D002209 ORTHO05D004761 1.1e-117 427.6 365 60.3
CSS0032919 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.4e-117 427.2 367 59.1
Dinv24643 Davidia involucrata HOM05D002209 ORTHO05D004761 1.8e-117 426.8 366 60.4
CSS0009925 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.6e-116 422.9 365 58.9
Eucgr.B00855 Eucalyptus grandis HOM05D002209 ORTHO05D004761 3.4e-116 422.5 371 58.8
Rhsim07G0079200 Rhododendron simsii HOM05D002209 ORTHO05D004761 4.4e-116 422.2 366 59.6
Atru.chr9.949 Acer truncatum HOM05D002209 ORTHO05D004761 1.3e-115 420.6 369 59.3
RhsimUnG0064800 Rhododendron simsii HOM05D002209 ORTHO05D004761 3.7e-115 419.1 378 57.7
Manes.06G008500 Manihot esculenta HOM05D002209 ORTHO05D004761 6.4e-115 418.3 373 59.0
TWI81G0085 Tripterygium wilfordii HOM05D002209 ORTHO05D004761 6.4e-115 418.3 368 57.6
Cc04_g06630 Coffea canephora HOM05D002209 ORTHO05D004761 1.3e-112 410.6 361 56.8
Peaxi162Scf01127g00030 Petunia axillaris HOM05D002209 ORTHO05D004761 1.1e-111 407.5 370 55.9
CiPaw.16G090800 Carya illinoinensis HOM05D002209 ORTHO05D004761 1.5e-111 407.1 368 58.4
HanXRQChr05g0144521 Helianthus annuus HOM05D002209 ORTHO05D004761 2.1e-110 403.3 361 55.4
Sed0007305 Sechium edule HOM05D002209 ORTHO05D004761 2.1e-110 403.3 372 55.6
Potri.015G041700 Populus trichocarpa HOM05D002209 ORTHO05D004761 2.8e-110 402.9 368 58.2
MD00G1160600 Malus domestica HOM05D002209 ORTHO05D004761 1.8e-109 400.2 368 58.4
Potri.012G049700 Populus trichocarpa HOM05D002209 ORTHO05D004761 6.8e-109 398.3 368 57.3
Nn4g24077 Nelumbo nucifera HOM05D002209 ORTHO05D004761 8.9e-109 397.9 369 56.9
Prupe.5G229900 Prunus persica HOM05D002209 ORTHO05D004761 8.9e-109 397.9 362 59.1
CsaV3_1G004130 Cucumis sativus L. HOM05D002209 ORTHO05D004761 2.0e-108 396.7 372 55.4
Hma1.2p1_0669F.1_g200340 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 4.4e-108 395.6 372 56.2
Peaxi162Scf00683g00231 Petunia axillaris HOM05D002209 ORTHO05D004761 6.4e-107 391.7 367 54.0
Lsat_1_v5_gn_3_1001 Lactuca sativa HOM05D002209 ORTHO05D004761 8.3e-107 391.3 365 55.3
PGSC0003DMG402005658 Solanum tuberosum HOM05D002209 ORTHO05D004761 8.3e-107 391.3 369 53.1
Nn3g18057 Nelumbo nucifera HOM05D002209 ORTHO05D004761 1.1e-106 391.0 370 55.9
RcHm_v2.0_Chr7g0178801 Rosa chinensis HOM05D002209 ORTHO05D004761 1.4e-106 390.6 367 56.9
Ciclev10008707m.g Citrus clementina HOM05D002209 ORTHO05D004761 3.2e-106 389.4 369 55.0
CANSAT80G1163 Cannabis sativa HOM05D002209 ORTHO05D004761 4.1e-106 389.0 367 55.0
CANSAT80G2224 Cannabis sativa HOM05D002209 ORTHO05D004761 4.1e-106 389.0 367 55.0
Nitab4.5_0001158g0020 Nicotiana tabacum HOM05D002209 ORTHO05D004761 7.1e-106 388.3 368 53.5
Sopen03g037920 Solanum pennellii HOM05D002209 ORTHO05D004761 7.1e-106 388.3 369 52.6
MD14G1233700 Malus domestica HOM05D002209 ORTHO05D004761 1.2e-105 387.5 368 56.8
Solyc03g119030.4 Solanum lycopersicum HOM05D002209 ORTHO05D004761 1.6e-105 387.1 369 52.6
DCAR_011382 Daucus carota HOM05D002209 ORTHO05D004761 2.1e-105 386.7 363 54.3
CAN.G1129.31 Capsicum annuum HOM05D002209 ORTHO05D004761 7.8e-105 384.8 369 52.3
MBI10_g07297_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 1.7e-104 383.6 369 54.7
PSO782G2563 Papaver somniferum HOM05D002209 ORTHO05D004761 2.5e-103 379.8 373 53.4
Nitab4.5_0012369g0030 Nicotiana tabacum HOM05D002209 ORTHO05D004761 4.7e-102 375.6 384 50.8
THA.LOC104821836 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 4.7e-102 375.6 371 54.2
AT1G48635 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 6.2e-102 375.2 367 53.7
MSTRG.4560 Avicennia marina HOM05D002209 ORTHO05D004761 1.1e-101 374.4 363 52.3
Sp1g35610 Schrenkiella parvula HOM05D002209 ORTHO05D004761 1.1e-101 374.4 368 53.0
Actinidia35110 Actinidia chinensis HOM05D002209 ORTHO05D004761 1.8e-101 373.6 325 61.5
FAN18G1515 Fragaria x ananassa HOM05D002209 ORTHO05D004761 2.4e-101 373.2 366 55.5
ClCG06G014470 Citrullus lanatus HOM05D002209 ORTHO05D004761 3.1e-101 372.9 362 53.0
FAN08G3349 Fragaria x ananassa HOM05D002209 ORTHO05D004761 3.1e-101 372.9 393 53.4
Sc12g0007380 Simmondsia chinensis HOM05D002209 ORTHO05D004761 3.1e-101 372.9 371 52.3
THA.LOC104820369 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 5.2e-101 372.1 367 53.1
FvH4_5g17050 Fragaria vesca HOM05D002209 ORTHO05D004761 8.9e-101 371.3 366 55.2
PSO063G7528 Papaver somniferum HOM05D002209 ORTHO05D004761 1.2e-100 370.9 365 53.7
AL1G55300 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 1.7e-99 367.1 367 52.0
Aa31LG10G5170 Aethionema arabicum HOM05D003754 ORTHO05D004530 4.9e-99 365.5 365 52.3
Carub.0001s3778 Capsella rubella HOM05D002209 ORTHO05D004761 4.9e-99 365.5 367 52.6
MSTRG.9285 Avicennia marina HOM05D002209 ORTHO05D004761 1.1e-98 364.4 367 51.5
Aqoxy3G03975 Aquilegia oxysepala HOM05D002209 ORTHO05D004761 1.9e-98 363.6 371 52.8
AL3G31330 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 4.2e-98 362.5 364 53.6
FAN13G0599 Fragaria x ananassa HOM05D002209 ORTHO05D004761 7.1e-98 361.7 396 51.5
BcaC08g43072 Brassica carinata HOM05D002209 ORTHO05D004761 9.2e-98 361.3 367 51.5
BcaB07g33725 Brassica carinata HOM05D002209 ORTHO05D004761 1.6e-97 360.5 367 51.2
A06p04280 Brassica napus HOM05D002209 ORTHO05D004761 4.6e-97 359.0 369 51.8
C06p03290 Brassica napus HOM05D002209 ORTHO05D004761 4.6e-97 359.0 367 51.2
Nitab4.5_0000150g0110 Nicotiana tabacum HOM05D002209 ORTHO05D004761 7.8e-97 358.2 390 51.3
Thhalv10011573m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 1.3e-96 357.5 382 51.0
CARHR038280 Cardamine hirsuta HOM05D002209 ORTHO05D004761 3.0e-96 356.3 367 51.2
CARHR093480 Cardamine hirsuta HOM05D002209 ORTHO05D004761 3.0e-96 356.3 363 51.8
vmacro16528 Vaccinium macrocarpon HOM05D002209 ORTHO05D004761 6.6e-96 355.1 366 53.0
AT3G18160 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 1.5e-95 354.0 364 52.5
ECA246G4025 Erigeron canadensis HOM05D002209 ORTHO05D004761 1.6e-94 350.5 331 53.5
Sp3g16270 Schrenkiella parvula HOM05D002209 ORTHO05D004761 6.2e-94 348.6 365 50.7
BolC3t17231H Brassica oleracea HOM05D002209 ORTHO05D004761 8.1e-94 348.2 370 50.3
Sabra15G0063000 Salix brachista HOM05D002209 ORTHO05D004761 2.4e-93 346.7 483 43.5
SalBow1G1036 Salvia bowleyana HOM05D002209 ORTHO05D004761 2.4e-93 346.7 393 47.8
BcaB04g20791 Brassica carinata HOM05D002209 ORTHO05D004761 4.0e-93 345.9 363 51.2
BraA03t13213Z Brassica rapa HOM05D002209 ORTHO05D004761 5.3e-93 345.5 370 50.0
BcaB04g18980 Brassica carinata HOM05D002209 ORTHO05D004761 9.0e-93 344.7 368 50.8
EL10Ac8g19603 Beta vulgaris HOM05D002209 ORTHO05D004761 1.2e-92 344.4 405 47.9
Carub.0003s1787 Capsella rubella HOM05D002209 ORTHO05D004761 2.0e-92 343.6 363 51.2
BolC6t35461H Brassica oleracea HOM05D002209 ORTHO05D004761 3.4e-92 342.8 400 47.0
TAR622G1360 Trochodendron aralioides HOM05D002209 ORTHO05D004761 3.4e-92 342.8 317 59.3
BraA06t23631Z Brassica rapa HOM05D002209 ORTHO05D004761 7.6e-92 341.7 405 47.2
TAR629G1642 Trochodendron aralioides HOM05D002209 ORTHO05D004761 7.6e-92 341.7 316 57.6
A03p40560 Brassica napus HOM05D002209 ORTHO05D004761 3.8e-91 339.3 365 49.3
C03p49370 Brassica napus HOM05D002209 ORTHO05D004761 3.8e-91 339.3 380 48.9
BcaC09g48771 Brassica carinata HOM05D002209 ORTHO05D004761 4.9e-91 339.0 360 51.4
Sabra15G0055400 Salix brachista HOM05D002209 ORTHO05D004761 4.9e-91 339.0 505 41.4
Thhalv10020989m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 5.4e-90 335.5 365 49.3
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 7.1e-90 335.1 354 51.4
MBI16_g47222_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 2.1e-89 333.6 371 48.8
HPP92_008203 Vanilla planifolia HOM05D002209 ORTHO05D004761 4.6e-89 332.4 370 48.4
CDE02G4061 Ceratophyllum demersum HOM05D002209 ORTHO05D004761 6.0e-89 332.0 364 50.0
Duzib068G1457 Durio zibethinus HOM05D002209 ORTHO05D004761 1.0e-88 331.3 369 49.6
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 2.3e-88 330.1 350 51.4
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 3.9e-88 329.3 351 50.7
Cpa.g.sc3.426 Carica papaya HOM05D002209 ORTHO05D004761 8.7e-88 328.2 313 56.5
Psat0s3278g0200 Pisum sativum HOM05D002209 ORTHO05D004761 8.7e-88 328.2 278 64.0
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 1.1e-87 327.8 351 51.0
MELO3C017339.2 Cucumis melo HOM05D002209 ORTHO05D004761 2.5e-87 326.6 293 56.0
Migut.D01447 Erythranthe guttata HOM05D002209 ORTHO05D004761 9.6e-87 324.7 364 47.0
BcaC01g03707 Brassica carinata HOM05D002209 ORTHO05D004761 6.2e-86 322.0 371 48.2
Sed0027899 Sechium edule HOM05D002209 ORTHO05D004761 1.2e-84 317.8 284 54.9
Hund22655 Selenicereus undatus HOM05D002209 ORTHO05D004761 4.9e-83 312.4 355 50.1
Nitab4.5_0012395g0010 Nicotiana tabacum HOM05D002209 ORTHO05D004761 6.4e-83 312.0 335 51.9
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 4.2e-82 309.3 560 37.9
SHI19025 Sapria himalayana HOM05D002209 ORTHO05D000001 3.5e-81 306.2 372 44.9
AUR62002654 Chenopodium quinoa HOM05D002209 ORTHO05D004761 4.5e-76 289.3 311 53.1
SGA_v2.0_scaffold171G38932 Striga asiatica HOM05D002209 ORTHO05D004761 4.3e-71 272.7 478 36.0
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 3.7e-70 269.6 297 50.2
Oeu017507.1 Olea europaea HOM05D002209 ORTHO05D004761 5.8e-68 262.3 209 62.2
CSS0022680 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.9e-67 260.0 211 61.6
CSS0012524 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.4e-61 241.1 171 69.6
FAN04G3108 Fragaria x ananassa HOM05D002209 ORTHO05D004761 2.4e-61 240.4 211 58.8
Sopen12g020100 Solanum pennellii HOM05D002209 ORTHO05D004761 2.4e-61 240.4 209 56.0
MBI16_g47372_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 3.1e-61 240.0 313 47.0
Solyc12g040500.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 5.3e-61 239.2 214 54.7
SEGI_04696 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 2.2e-59 233.8 340 39.1
Hma1.2p1_0669F.1_g200330 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 7.9e-57 225.3 165 66.1
Gorai.007G186700 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.0e-56 224.9 167 64.7
Gorai.008G042300 Gossypium raimondii HOM05D002209 ORTHO05D004761 2.3e-56 223.8 167 64.1
CSS0005213 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 3.9e-56 223.0 165 64.8
Gohir.D08G140100 Gossypium hirsutum HOM05D002209 ORTHO05D004761 6.7e-56 222.2 167 64.1
Zm00001eb098030 Zea mays HOM05D002209 ORTHO05D004761 8.8e-56 221.9 315 40.0
Gorai.004G122400 Gossypium raimondii HOM05D002209 ORTHO05D004761 4.3e-55 219.5 169 62.7
CSS0038011 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 7.4e-55 218.8 207 55.6
AUR62040790 Chenopodium quinoa HOM05D002209 ORTHO05D004761 9.7e-55 218.4 311 42.8
CSS0040553 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.2e-54 217.2 207 56.0
QL10p027517 Quercus lobata HOM05D002209 ORTHO05D004761 1.1e-53 214.9 206 55.8
Mapoly0003s0191 Marchantia polymorpha HOM05D002209 ORTHO05D004761 2.4e-53 213.8 375 33.9
Pp3c8_16550 Physcomitrium patens HOM05D002209 ORTHO05D004761 2.4e-53 213.8 390 36.2
Pp3c24_12050 Physcomitrium patens HOM05D002209 ORTHO05D004761 5.0e-51 206.1 384 34.4
Pp3c20_5170 Physcomitrium patens HOM05D002209 ORTHO05D004761 1.9e-50 204.1 383 34.5
Gohir.D13G126266 Gossypium hirsutum HOM05D002209 ORTHO05D004761 2.5e-50 203.8 167 60.5
AagrBONN_evm.TU.Sc2ySwM_344.1865 Anthoceros agrestis HOM05D002209 ORTHO05D004761 1.4e-48 198.0 374 33.2
CSS0016222 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 5.9e-44 182.6 190 53.7
PGSC0003DMG400015821 Solanum tuberosum HOM05D002209 ORTHO05D004761 1.7e-43 181.0 156 57.7
SEGI_01637 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 2.9e-43 180.3 259 40.2
CBR_g38112 Chara braunii HOM05D002209 ORTHO05D004761 8.0e-41 172.2 372 30.6
unitig_0.g802 Utricularia gibba HOM05D002209 ORTHO05D004761 1.4e-40 171.4 205 44.9
CSS0034654 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.0e-39 167.5 111 75.7
Gorai.008G062000 Gossypium raimondii HOM05D002209 ORTHO05D004761 3.3e-39 166.8 127 61.4
SMO367G0254 Selaginella moellendorffii HOM05D002209 ORTHO05D004761 2.4e-37 160.6 370 30.5
CSS0050298 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 8.5e-35 152.1 153 53.6
CAN.G197.13 Capsicum annuum HOM05D002209 ORTHO05D004761 8.5e-35 152.1 123 56.1
GSVIVG01008387001 Vitis vinifera HOM05D002209 ORTHO05D004761 5.5e-34 149.4 164 50.0
Solyc12g040480.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 1.3e-30 138.3 161 44.1
Sopen12g020080 Solanum pennellii HOM05D002209 ORTHO05D004761 1.7e-30 137.9 161 44.1
Os09g0314300 Oryza sativa ssp. japonica HOM05D002209 ORTHO05D004761 7.0e-29 132.5 124 50.0
PGSC0003DMG400015822 Solanum tuberosum HOM05D002209 ORTHO05D004761 8.0e-25 119.0 140 45.0
ATR0326G049 Amborella trichopoda HOM05D002209 ORTHO05D004761 2.3e-24 117.5 173 39.3
Oeu017505.1 Olea europaea HOM05D002209 ORTHO05D004761 2.4e-21 107.5 136 41.9
Oeu053224.1 Olea europaea HOM05D002209 ORTHO05D004761 5.9e-20 102.8 136 39.7
PRCOL_00001207 Prasinoderma coloniale HOM05D006727 ORTHO05D008408 2.3e-16 90.9 254 25.6
AagrBONN_evm.TU.Sc2ySwM_368.2096 Anthoceros agrestis HOM05D002209 ORTHO05D004761 1.7e-11 74.7 227 26.9
arahy.Tifrunner.gnm1.ann1.C5B8HT Arachis hypogaea HOM05D002209 ORTHO05D004761 7.3e-10 69.3 48 70.8


User provided reference genes

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