Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g105860 Medicago truncatula HOM05D004220 ORTHO05D006217 3.0e-210 734.9 380 100.0
Ca_17252_v3 Cicer arietinum L. HOM05D004220 ORTHO05D006217 5.5e-196 687.6 378 94.7
Psat4g004640 Pisum sativum HOM05D004220 ORTHO05D006217 5.7e-193 677.6 378 91.3
Glyma.08G047800 Glycine max HOM05D004220 ORTHO05D006217 7.2e-188 660.6 380 89.5
Lj4g0025833 Lotus japonicus HOM05D004220 ORTHO05D006217 4.7e-187 657.9 378 88.9
LjContig00081g0015221 Lotus japonicus HOM05D004220 ORTHO05D006217 5.2e-186 654.4 378 88.6
Glyma.05G240700 Glycine max HOM05D004220 ORTHO05D006217 1.2e-185 653.3 378 88.9
VMungo0251G0500 Vigna mungo HOM05D004220 ORTHO05D006217 4.5e-182 641.3 378 87.8
Phvul.002G323900 Phaseolus vulgaris HOM05D004220 ORTHO05D006217 6.6e-181 637.5 378 87.3
arahy.Tifrunner.gnm1.ann1.GF1W8W Arachis hypogaea HOM05D004220 ORTHO05D006217 9.5e-180 633.6 378 86.8
Lalb_Chr16g0387441 Lupinus albus HOM05D004220 ORTHO05D006217 1.6e-179 632.9 380 87.4
Lalb_Chr05g0222081 Lupinus albus HOM05D004220 ORTHO05D006217 2.1e-179 632.5 380 87.1
Lalb_Chr09g0330781 Lupinus albus HOM05D004220 ORTHO05D006217 1.4e-178 629.8 380 86.8
Manes.15G135500 Manihot esculenta HOM05D004220 ORTHO05D006217 2.6e-177 625.5 359 86.9
Sabra08G0103700 Salix brachista HOM05D004220 ORTHO05D006217 2.9e-176 622.1 357 86.6
Potri.008G135700 Populus trichocarpa HOM05D004220 ORTHO05D006217 1.8e-175 619.4 357 86.3
Haze_10865 Corylus avellana HOM05D004220 ORTHO05D006217 4.1e-175 618.2 376 84.3
Ciclev10015633m.g Citrus clementina HOM05D004220 ORTHO05D006217 5.4e-175 617.8 380 83.9
Lj6A736T83 Lonicera japonica HOM05D004220 ORTHO05D006217 3.5e-174 615.1 366 87.2
Potri.010G105300 Populus trichocarpa HOM05D004220 ORTHO05D006217 6.0e-174 614.4 357 85.2
Cfa015032 Carpinus fangiana HOM05D004220 ORTHO05D006217 7.8e-174 614.0 376 83.5
Eucgr.B03437 Eucalyptus grandis HOM05D004220 ORTHO05D006217 8.6e-173 610.5 368 85.1
CANSAT78G0088 Cannabis sativa HOM05D004220 ORTHO05D006217 1.1e-172 610.1 367 85.3
Dinv26357 Davidia involucrata HOM05D004220 ORTHO05D006217 1.9e-172 609.4 362 86.5
QL03p036195 Quercus lobata HOM05D004220 ORTHO05D006217 1.2e-171 606.7 378 82.8
CiPaw.06G053400 Carya illinoinensis HOM05D004220 ORTHO05D006217 6.2e-171 604.4 377 82.8
TWI74G0333 Tripterygium wilfordii HOM05D004220 ORTHO05D006217 2.3e-170 602.4 365 83.3
Cpa.g.sc2.184 Carica papaya HOM05D004220 ORTHO05D006217 6.8e-170 600.9 371 83.8
Dinv18907 Davidia involucrata HOM05D004220 ORTHO05D006217 6.8e-170 600.9 347 87.6
Solyc01g005250.4 Solanum lycopersicum HOM05D004220 ORTHO05D006217 6.8e-170 600.9 375 81.6
Sopen01g001280 Solanum pennellii HOM05D004220 ORTHO05D006217 6.8e-170 600.9 375 81.6
FvH4_4g33450 Fragaria vesca HOM05D004220 ORTHO05D006217 1.2e-169 600.1 363 83.5
RcHm_v2.0_Chr4g0442761 Rosa chinensis HOM05D004220 ORTHO05D006217 2.0e-169 599.4 372 82.0
Lsat_1_v5_gn_8_35340 Lactuca sativa HOM05D004220 ORTHO05D006217 2.6e-169 599.0 359 86.1
FAN12G0660 Fragaria x ananassa HOM05D004220 ORTHO05D006217 3.4e-169 598.6 351 85.8
Thecc.02G309700 Theobroma cacao HOM05D004220 ORTHO05D006217 4.4e-169 598.2 363 82.4
Potri.010G105000 Populus trichocarpa HOM05D004220 ORTHO05D006217 5.8e-169 597.8 345 86.1
ClCG07G005480 Citrullus lanatus HOM05D004220 ORTHO05D006217 7.5e-169 597.4 378 81.7
MELO3C010427.2 Cucumis melo HOM05D004220 ORTHO05D006217 7.5e-169 597.4 376 81.4
PGSC0003DMG400022796 Solanum tuberosum HOM05D004220 ORTHO05D006217 7.5e-169 597.4 388 78.9
AL1G26830 Arabidopsis lyrata HOM05D004220 ORTHO05D006217 9.8e-169 597.0 380 81.8
Prupe.1G334400 Prunus persica HOM05D004220 ORTHO05D006217 9.8e-169 597.0 365 83.0
TPR.G19271 Trifolium pratense HOM05D004220 ORTHO05D006217 9.8e-169 597.0 322 94.7
CsaV3_5G014440 Cucumis sativus L. HOM05D004220 ORTHO05D006217 1.3e-168 596.7 361 83.9
Actinidia12400 Actinidia chinensis HOM05D004220 ORTHO05D006217 1.7e-168 596.3 365 84.1
FAN22G0209 Fragaria x ananassa HOM05D004220 ORTHO05D006217 2.2e-168 595.9 366 82.2
AT1G14810 Arabidopsis thaliana HOM05D004220 ORTHO05D006217 2.9e-168 595.5 380 81.8
FAN07G0058 Fragaria x ananassa HOM05D004220 ORTHO05D006217 2.9e-168 595.5 363 82.6
FAN07G1238 Fragaria x ananassa HOM05D004220 ORTHO05D006217 2.9e-168 595.5 363 82.6
PGR102G3065 Punica granatum HOM05D004220 ORTHO05D006217 1.1e-167 593.6 348 85.1
Gorai.013G028900 Gossypium raimondii HOM05D004220 ORTHO05D006217 1.4e-167 593.2 378 80.4
MBI05_g37451_MAGBIO Magnolia biondii HOM05D004220 ORTHO05D006217 1.9e-167 592.8 347 86.5
Sed0023691 Sechium edule HOM05D004220 ORTHO05D006217 1.9e-167 592.8 371 81.9
Gohir.D13G025700 Gossypium hirsutum HOM05D004220 ORTHO05D006217 2.4e-167 592.4 378 80.4
THA.LOC104805088 Tarenaya hassleriana HOM05D004220 ORTHO05D006217 2.4e-167 592.4 368 82.3
Carub.0001s1460 Capsella rubella HOM05D004220 ORTHO05D006217 3.2e-167 592.0 380 81.3
Atru.chr11.900 Acer truncatum HOM05D004220 ORTHO05D006217 4.1e-167 591.7 380 80.8
BcaB03g13081 Brassica carinata HOM05D004220 ORTHO05D006217 4.1e-167 591.7 371 82.7
TAR371G0933 Trochodendron aralioides HOM05D004220 ORTHO05D006217 4.1e-167 591.7 347 85.6
BcaC07g38762 Brassica carinata HOM05D004220 ORTHO05D006217 5.4e-167 591.3 371 82.7
FAN17G0395 Fragaria x ananassa HOM05D004220 ORTHO05D006217 5.4e-167 591.3 362 82.9
BcaB02g06550 Brassica carinata HOM05D004220 ORTHO05D006217 7.0e-167 590.9 370 81.6
CARHR015340 Cardamine hirsuta HOM05D004220 ORTHO05D006217 7.0e-167 590.9 359 83.0
MD13G1019500 Malus domestica HOM05D004220 ORTHO05D006217 7.0e-167 590.9 358 83.0
Nn4g24652 Nelumbo nucifera HOM05D004220 ORTHO05D006217 7.0e-167 590.9 347 83.6
C08p16920 Brassica napus HOM05D004220 ORTHO05D006217 9.2e-167 590.5 371 82.7
BolC8t49319H Brassica oleracea HOM05D004220 ORTHO05D006217 9.2e-167 590.5 371 82.7
BraA06t24264Z Brassica rapa HOM05D004220 ORTHO05D006217 1.2e-166 590.1 380 80.5
PSO541G1847 Papaver somniferum HOM05D004220 ORTHO05D006217 1.2e-166 590.1 347 85.9
Sed0000427 Sechium edule HOM05D004220 ORTHO05D006217 1.2e-166 590.1 371 82.2
A06p10860 Brassica napus HOM05D004220 ORTHO05D006217 2.0e-166 589.3 380 80.5
Thhalv10007952m.g Eutrema salsugineum HOM05D004220 ORTHO05D006217 2.0e-166 589.3 371 81.9
Hund08335 Selenicereus undatus HOM05D004220 ORTHO05D006217 2.7e-166 589.0 367 81.7
BraA08t35103Z Brassica rapa HOM05D004220 ORTHO05D006217 3.5e-166 588.6 359 83.3
DCAR_002675 Daucus carota HOM05D004220 ORTHO05D006217 3.5e-166 588.6 360 83.9
Sc17g0004200 Simmondsia chinensis HOM05D004220 ORTHO05D006217 3.5e-166 588.6 371 81.7
A08p31810 Brassica napus HOM05D004220 ORTHO05D006217 4.6e-166 588.2 359 83.0
Duzib251G0717 Durio zibethinus HOM05D004220 ORTHO05D006217 4.6e-166 588.2 363 81.5
COL.COLO4_27642 Corchorus olitorius HOM05D004220 ORTHO05D006217 6.0e-166 587.8 378 80.2
Nitab4.5_0000640g0100 Nicotiana tabacum HOM05D004220 ORTHO05D006217 6.0e-166 587.8 345 84.9
MSTRG.13631 Avicennia marina HOM05D004220 ORTHO05D006217 1.0e-165 587.0 366 81.4
Duzib248G1338 Durio zibethinus HOM05D004220 ORTHO05D006217 1.3e-165 586.6 363 81.3
Sp1g13250 Schrenkiella parvula HOM05D004220 ORTHO05D006217 1.3e-165 586.6 370 80.8
MD16G1017700 Malus domestica HOM05D004220 ORTHO05D006217 1.7e-165 586.3 355 83.4
PSO302G0185 Papaver somniferum HOM05D004220 ORTHO05D006217 2.3e-165 585.9 347 85.6
SGA_v2.0_scaffold143G35733 Striga asiatica HOM05D004220 ORTHO05D006217 2.3e-165 585.9 368 81.0
BcaC05g25401 Brassica carinata HOM05D004220 ORTHO05D006217 3.0e-165 585.5 380 80.3
Migut.E00492 Erythranthe guttata HOM05D004220 ORTHO05D006217 3.0e-165 585.5 350 84.3
Gohir.A13G026900 Gossypium hirsutum HOM05D004220 ORTHO05D006217 3.0e-165 585.5 378 79.9
ATR0763G027 Amborella trichopoda HOM05D004220 ORTHO05D006217 3.9e-165 585.1 349 85.1
DCAR_022139 Daucus carota HOM05D004220 ORTHO05D006217 3.9e-165 585.1 363 82.1
C05p12790 Brassica napus HOM05D004220 ORTHO05D006217 6.6e-165 584.3 380 80.0
Aqoxy6G01748 Aquilegia oxysepala HOM05D004220 ORTHO05D006217 8.6e-165 583.9 374 79.9
BolC5t30019H Brassica oleracea HOM05D004220 ORTHO05D006217 8.6e-165 583.9 380 80.0
SalBow2G3345 Salvia bowleyana HOM05D004220 ORTHO05D006217 8.6e-165 583.9 375 79.5
SGA_v2.0_scaffold23G10178 Striga asiatica HOM05D004220 ORTHO05D006217 8.6e-165 583.9 376 79.8
HanXRQChr12g0364941 Helianthus annuus HOM05D004220 ORTHO05D006217 1.1e-164 583.6 385 80.5
Aa31LG1G290 Aethionema arabicum HOM05D004220 ORTHO05D006217 2.5e-164 582.4 357 81.5
Gorai.008G170900 Gossypium raimondii HOM05D004220 ORTHO05D006217 2.5e-164 582.4 363 80.7
Oeu044002.1 Olea europaea HOM05D004220 ORTHO05D006217 4.3e-164 581.6 374 79.7
ECA233G3753 Erigeron canadensis HOM05D004220 ORTHO05D006217 9.5e-164 580.5 358 83.0
Gohir.A12G154900 Gossypium hirsutum HOM05D004220 ORTHO05D006217 1.2e-163 580.1 363 80.2
THA.LOC104824123 Tarenaya hassleriana HOM05D004220 ORTHO05D006217 1.2e-163 580.1 357 82.1
EL10Ac9g22864 Beta vulgaris HOM05D004220 ORTHO05D006217 6.2e-163 577.8 371 80.3
AUR62015160 Chenopodium quinoa HOM05D004220 ORTHO05D006217 6.2e-163 577.8 345 84.3
CAN.G282.120 Capsicum annuum HOM05D004220 ORTHO05D006217 1.8e-162 576.2 345 82.9
AUR62017612 Chenopodium quinoa HOM05D004220 ORTHO05D006217 2.3e-162 575.9 345 83.5
Rhsim09G0088900 Rhododendron simsii HOM05D004220 ORTHO05D006217 2.3e-162 575.9 389 78.4
CDE07G1395 Ceratophyllum demersum HOM05D004220 ORTHO05D006217 1.5e-161 573.2 382 76.7
SEGI_30189 Sequoiadendron giganteum HOM05D004220 ORTHO05D006217 3.2e-159 565.5 347 80.4
Pp3c5_10760 Physcomitrium patens HOM05D004220 ORTHO05D006217 6.0e-158 561.2 349 80.5
unitig_27.g25162 Utricularia gibba HOM05D004220 ORTHO05D006217 6.0e-158 561.2 373 77.7
Zm00001eb214360 Zea mays HOM05D004220 ORTHO05D006217 2.5e-156 555.8 362 75.4
SMO119G0035 Selaginella moellendorffii HOM05D004220 ORTHO05D006217 1.2e-155 553.5 345 80.0
Gohir.D12G158100 Gossypium hirsutum HOM05D004220 ORTHO05D006217 6.2e-155 551.2 384 73.7
AagrBONN_evm.TU.Sc2ySwM_368.1674 Anthoceros agrestis HOM05D004220 ORTHO05D006217 1.4e-154 550.1 347 78.7
Mapoly0086s0044 Marchantia polymorpha HOM05D004220 ORTHO05D006217 8.9e-154 547.4 355 76.6
HanXRQChr06g0171081 Helianthus annuus HOM05D004220 ORTHO05D006217 2.2e-152 542.7 394 75.4
Os03g0760700 Oryza sativa ssp. japonica HOM05D004220 ORTHO05D006217 1.6e-150 536.6 347 76.4
unitig_29.g31883 Utricularia gibba HOM05D004220 ORTHO05D006217 4.6e-150 535.0 346 79.5
Ah.05g168430 Amaranthus hybridus HOM05D004220 ORTHO05D006217 1.5e-148 530.0 341 79.8
Peaxi162Scf00275g00215 Petunia axillaris HOM05D004220 ORTHO05D006217 2.0e-145 519.6 379 72.6
CBR_g30041 Chara braunii HOM05D004220 ORTHO05D006217 3.4e-145 518.8 325 80.6
Nitab4.5_0000198g0090 Nicotiana tabacum HOM05D004220 ORTHO05D006217 1.2e-142 510.4 296 85.5
TAR622G1230 Trochodendron aralioides HOM05D004220 ORTHO05D006217 6.0e-142 508.1 294 85.7
HPP92_001024 Vanilla planifolia HOM05D004220 ORTHO05D006217 1.6e-139 500.0 341 76.8
Cre09.g389689 Chlamydomonas reinhardtii HOM05D004220 ORTHO05D006217 6.2e-131 471.5 341 70.1
MCO01G646 Micromonas commoda HOM05D004220 ORTHO05D006217 1.4e-127 460.3 347 66.0
Actinidia36618 Actinidia chinensis HOM05D004220 ORTHO05D006217 9.0e-122 441.0 303 76.6
PRCOL_00000291 Prasinoderma coloniale HOM05D004220 ORTHO05D006217 1.8e-117 426.8 306 70.6
GSVIVG01011646001 Vitis vinifera HOM05D004220 ORTHO05D006217 1.0e-109 401.0 225 90.2
Cc11_g06980 Coffea canephora HOM05D004220 ORTHO05D006217 3.2e-87 326.2 188 86.7
Nn3g18412 Nelumbo nucifera HOM05D004220 ORTHO05D006217 1.0e-85 321.2 186 86.6
TAR629G1713 Trochodendron aralioides HOM05D004220 ORTHO05D006217 2.0e-68 263.8 159 81.1
TAR629G0578 Trochodendron aralioides HOM05D004220 ORTHO05D006217 1.7e-67 260.8 159 79.9
MD13G1041100 Malus domestica HOM05D004220 ORTHO05D006217 1.6e-57 227.6 240 55.8
Aqoxy6G01744 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 2.5e-55 220.3 138 79.0
Aqoxy2G01924 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 5.8e-52 209.1 125 81.6
Aqoxy7G02277 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 6.4e-51 205.7 121 82.6
BolC8t52095H Brassica oleracea HOM05D004220 ORTHO05D001325 6.4e-51 205.7 118 83.1
TAR629G0842 Trochodendron aralioides HOM05D004220 ORTHO05D006217 1.9e-50 204.1 170 65.9
TAR629G3246 Trochodendron aralioides HOM05D004220 ORTHO05D006217 1.9e-50 204.1 170 65.9
C08p45410 Brassica napus HOM05D004220 ORTHO05D001325 2.4e-50 203.8 118 82.2
BcaC05g25398 Brassica carinata HOM05D000822 ORTHO05D002021 1.7e-48 197.6 177 60.5
CsaV3_5G014420 Cucumis sativus L. HOM05D004220 ORTHO05D006217 3.6e-38 163.3 97 80.4
RcHm_v2.0_Chr2g0166251 Rosa chinensis HOM05D004220 ORTHO05D006217 1.5e-36 157.9 102 77.5
Aqoxy3G02388 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 1.6e-33 147.9 127 63.0
BcaC07g41538 Brassica carinata HOM05D001471 ORTHO05D001325 7.8e-33 145.6 119 68.9
CDE12G0826 Ceratophyllum demersum HOM05D004220 ORTHO05D017372 1.1e-31 141.7 113 63.7
Aqoxy5G02471 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 2.5e-31 140.6 85 81.2
Aqoxy5G02966 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 2.1e-30 137.5 84 79.8
Aqoxy5G02658 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 2.8e-30 137.1 83 80.7
QL03p036261 Quercus lobata HOM05D004220 ORTHO05D006217 2.8e-30 137.1 78 84.6
AL7G45370 Arabidopsis lyrata HOM05D004220 ORTHO05D006217 1.8e-29 134.4 85 76.5
HanXRQChr08g0220351 Helianthus annuus HOM05D004220 ORTHO05D006217 1.8e-29 134.4 88 78.4
Actinidia36617 Actinidia chinensis HOM05D004220 ORTHO05D006217 2.0e-28 131.0 77 80.5
BraA09t39195Z Brassica rapa HOM05D004220 ORTHO05D027881 6.4e-27 125.9 71 85.9
C05p12760 Brassica napus HOM05D004220 ORTHO05D027881 1.1e-26 125.2 67 88.1
MSTRG.2121 Avicennia marina HOM05D004220 ORTHO05D017372 2.4e-26 124.0 92 65.2
A09p36790 Brassica napus HOM05D004220 ORTHO05D027881 1.2e-25 121.7 75 81.3
BraSC56t46400Z Brassica rapa HOM05D004220 ORTHO05D027881 8.7e-24 115.5 72 80.6
BcaB08g34410 Brassica carinata HOM05D001471 ORTHO05D001325 1.2e-17 95.1 81 65.4
TAR633G1096 Trochodendron aralioides HOM05D004220 ORTHO05D000192 1.2e-17 95.1 60 78.3
Actinidia26742 Actinidia chinensis HOM05D004220 ORTHO05D006217 3.3e-15 87.0 52 78.8
Cfa024397 Carpinus fangiana HOM05D004220 ORTHO05D043712 5.6e-15 86.3 346 26.9
HanXRQChr17g0555841 Helianthus annuus HOM05D004220 ORTHO05D006217 3.7e-14 83.6 57 73.7
C09p39400 Brassica napus HOM05D004220 ORTHO05D039209 2.3e-08 64.3 40 85.0


User provided reference genes

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