Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 4.3e-157 558.1 326 100.0
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 2.0e-130 469.5 327 83.8
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 2.7e-130 469.2 326 84.0
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 6.1e-127 458.0 326 81.6
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 3.8e-121 438.7 328 80.5
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 3.2e-120 435.6 290 80.3
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 5.5e-120 434.9 290 78.6
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 1.2e-119 433.7 290 80.0
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 9.2e-115 417.5 289 76.5
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 3.3e-112 409.1 293 73.7
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 3.3e-112 409.1 293 73.7
Phvul.007G037100 Phaseolus vulgaris HOM05D004323 ORTHO05D005140 1.7e-108 396.7 290 73.4
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 3.2e-107 392.5 290 72.1
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 3.9e-105 385.6 329 73.6
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 1.6e-98 363.6 331 69.2
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 6.6e-97 358.2 294 66.7
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 4.7e-95 352.1 295 65.4
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 8.3e-92 341.3 293 63.8
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 1.4e-91 340.5 331 65.9
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 2.1e-90 336.7 338 66.0
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 3.5e-90 335.9 338 65.1
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 1.7e-89 333.6 332 66.3
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 5.1e-89 332.0 294 61.9
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 2.5e-88 329.7 294 62.9
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 4.3e-88 328.9 296 61.5
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 7.3e-88 328.2 330 65.5
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 9.5e-88 327.8 294 63.6
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 9.5e-88 327.8 294 63.6
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 8.1e-87 324.7 329 62.6
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 8.1e-87 324.7 294 62.6
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 1.8e-86 323.6 331 65.6
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 3.1e-86 322.8 294 62.9
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 5.2e-86 322.0 310 59.4
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 3.8e-84 315.8 332 65.4
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 9.2e-83 311.2 340 62.6
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 2.1e-82 310.1 293 59.4
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 3.5e-82 309.3 329 61.4
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 7.8e-82 308.1 330 61.8
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 1.0e-81 307.8 275 61.5
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 8.7e-81 304.7 328 64.0
Cpa.g.sc65.119 Carica papaya HOM05D004323 ORTHO05D005140 1.1e-80 304.3 291 61.5
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 2.4e-78 296.6 310 56.5
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 1.4e-75 287.3 290 57.9
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 3.2e-75 286.2 301 58.1
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 2.8e-71 273.1 295 56.3
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 6.2e-71 271.9 327 59.6
Thhalv10018840m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 1.8e-70 270.4 297 54.9
BolC6t39576H Brassica oleracea HOM05D004323 ORTHO05D005140 3.1e-70 269.6 294 53.1
BraA07t31307Z Brassica rapa HOM05D004323 ORTHO05D005140 3.1e-70 269.6 290 53.4
C06p45200 Brassica napus HOM05D004323 ORTHO05D005140 4.0e-70 269.2 294 52.7
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 2.0e-69 266.9 287 56.1
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 2.0e-69 266.9 297 52.9
AT1G71080 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 4.5e-69 265.8 292 53.4
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 7.6e-69 265.0 291 55.3
A07p37500 Brassica napus HOM05D004323 ORTHO05D005140 9.9e-69 264.6 290 52.8
Carub.0002s1789 Capsella rubella HOM05D004323 ORTHO05D005140 1.7e-68 263.8 291 52.6
AL2G30660 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 2.2e-68 263.5 291 54.0
HPP92_006392 Vanilla planifolia HOM05D004323 ORTHO05D005140 2.2e-68 263.5 292 53.1
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 3.8e-68 262.7 301 53.8
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 3.8e-68 262.7 291 56.4
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 1.4e-67 260.8 298 52.3
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 3.2e-67 259.6 292 54.8
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 5.4e-67 258.8 312 51.6
Aa31LG4G9980 Aethionema arabicum HOM05D004323 ORTHO05D005140 1.2e-66 257.7 298 51.7
BcaC08g46546 Brassica carinata HOM05D004323 ORTHO05D005140 1.2e-66 257.7 293 51.2
BcaB03g14869 Brassica carinata HOM05D004323 ORTHO05D005140 2.7e-66 256.5 294 51.7
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 3.5e-66 256.1 298 51.7
Sp5g26250 Schrenkiella parvula HOM05D004323 ORTHO05D005140 4.6e-66 255.8 284 52.8
CARHR064370 Cardamine hirsuta HOM05D004323 ORTHO05D005140 1.8e-65 253.8 293 53.2
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 1.9e-64 250.4 285 53.3
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 3.3e-64 249.6 300 51.7
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 4.3e-64 249.2 299 51.5
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 9.6e-64 248.1 295 51.2
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 1.6e-63 247.3 333 48.3
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 3.7e-63 246.1 315 50.2
Os01g0507500 Oryza sativa ssp. japonica HOM05D004323 ORTHO05D005140 8.1e-63 245.0 292 52.4
Manes.02G073900 Manihot esculenta HOM05D004323 ORTHO05D005140 1.1e-62 244.6 295 50.5
PGR119G1370 Punica granatum HOM05D004323 ORTHO05D005140 1.4e-62 244.2 333 54.4
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 2.4e-62 243.4 299 50.5
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 4.0e-62 242.7 313 49.8
Zm00001eb217130 Zea mays HOM05D004323 ORTHO05D005140 5.3e-62 242.3 295 50.5
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 9.0e-62 241.5 328 49.1
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 9.0e-62 241.5 328 49.1
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 1.2e-61 241.1 311 50.8
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 2.0e-61 240.4 292 49.3
Ciclev10012163m.g Citrus clementina HOM05D004323 ORTHO05D005140 2.9e-60 236.5 300 48.7
Potri.004G092200 Populus trichocarpa HOM05D004323 ORTHO05D005140 4.9e-60 235.7 284 50.0
Atru.chr1.1769 Acer truncatum HOM05D004323 ORTHO05D005140 8.4e-60 235.0 298 47.7
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 8.4e-60 235.0 306 46.7
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 1.9e-59 233.8 296 50.0
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 4.2e-59 232.6 293 50.5
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 4.2e-59 232.6 304 49.3
THA.LOC104810161 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 1.2e-58 231.1 294 51.0
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 3.5e-58 229.6 297 47.1
TWI75G0714 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 4.6e-58 229.2 249 56.2
Zm00001eb053510 Zea mays HOM05D004323 ORTHO05D005140 4.6e-58 229.2 291 48.8
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 7.9e-58 228.4 294 48.6
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 1.3e-57 227.6 289 47.8
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 2.3e-57 226.9 314 48.1
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 3.0e-57 226.5 227 58.1
Prupe.3G151600 Prunus persica HOM05D004323 ORTHO05D005140 3.0e-57 226.5 297 51.5
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 4.3e-56 222.6 305 47.2
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 4.3e-56 222.6 311 46.3
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 5.6e-56 222.2 307 49.8
CDE08G1420 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 5.6e-56 222.2 294 51.0
Eucgr.F02814 Eucalyptus grandis HOM05D004323 ORTHO05D005140 7.4e-56 221.9 293 48.8
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 9.6e-56 221.5 295 47.5
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 1.3e-55 221.1 287 49.1
SHI04771 Sapria himalayana HOM05D004323 ORTHO05D005140 3.7e-55 219.5 291 48.1
Sabra04G0062000 Salix brachista HOM05D004323 ORTHO05D005140 1.4e-54 217.6 335 42.4
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 1.4e-54 217.6 299 46.2
MBI16_g32956_MAGBIO Magnolia biondii HOM05D004323 ORTHO05D005140 4.0e-54 216.1 253 51.4
PGR004G1785 Punica granatum HOM05D004323 ORTHO05D005140 9.0e-54 214.9 291 48.5
MD09G1260000 Malus domestica HOM05D004323 ORTHO05D005140 1.2e-53 214.5 293 48.5
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 1.5e-53 214.2 309 45.0
Nn3g18066 Nelumbo nucifera HOM05D004323 ORTHO05D005140 2.0e-53 213.8 150 72.0
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 2.0e-53 213.8 279 47.3
Gohir.A07G076100 Gossypium hirsutum HOM05D004323 ORTHO05D005140 2.5e-51 206.8 233 51.9
Gorai.001G085700 Gossypium raimondii HOM05D004323 ORTHO05D005140 5.5e-51 205.7 219 52.5
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 5.5e-51 205.7 308 42.5
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 7.1e-51 205.3 292 46.2
SGA_v2.0_scaffold174G39287 Striga asiatica HOM05D004323 ORTHO05D005140 2.7e-50 203.4 289 45.7
Gohir.D07G080600 Gossypium hirsutum HOM05D004323 ORTHO05D005140 6.7e-49 198.7 219 51.1
Peaxi162Scf00803g00424 Petunia axillaris HOM05D004323 ORTHO05D005140 6.7e-49 198.7 270 47.4
SalBow7G2861 Salvia bowleyana HOM05D004323 ORTHO05D005140 5.7e-48 195.7 281 48.4
THA.LOC104805595 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 2.2e-47 193.7 299 44.5
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 6.3e-47 192.2 296 47.0
Oeu041976.1 Olea europaea HOM05D004323 ORTHO05D005140 4.5e-45 186.0 150 65.3
AUR62030721 Chenopodium quinoa HOM05D004323 ORTHO05D005140 1.3e-44 184.5 180 58.3
SalBow1G3118 Salvia bowleyana HOM05D004323 ORTHO05D005140 2.9e-44 183.3 197 52.3
CARHR214700 Cardamine hirsuta HOM05D004323 ORTHO05D005140 1.9e-43 180.6 294 42.9
PSO063G0228 Papaver somniferum HOM05D004323 ORTHO05D005140 2.5e-43 180.3 122 69.7
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 1.2e-42 177.9 285 42.5
Sp7g04050 Schrenkiella parvula HOM05D004323 ORTHO05D005140 1.6e-42 177.6 293 40.6
SEGI_02231 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 3.6e-42 176.4 180 52.2
CSS0030424 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 3.0e-41 173.3 165 58.2
AT5G38050 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 1.9e-40 170.6 292 42.1
Carub.0005s1233 Capsella rubella HOM05D004323 ORTHO05D005140 1.4e-38 164.5 289 41.2
Thhalv10027858m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 3.4e-37 159.8 288 37.5
AagrBONN_evm.TU.Sc2ySwM_117.2431 Anthoceros agrestis HOM05D004323 ORTHO05D005140 4.7e-34 149.4 118 60.2
CSS0049640 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 4.7e-34 149.4 149 57.0
Mapoly0014s0191 Marchantia polymorpha HOM05D004323 ORTHO05D005140 6.1e-34 149.1 126 57.9
AagrBONN_evm.TU.Sc2ySwM_344.4471 Anthoceros agrestis HOM05D004323 ORTHO05D005140 7.9e-34 148.7 290 38.6
SMO268G0019 Selaginella moellendorffii HOM05D004323 ORTHO05D005140 1.0e-33 148.3 171 51.5
unitig_32.g11885 Utricularia gibba HOM05D004323 ORTHO05D005140 2.3e-33 147.1 297 39.1
Pp3c18_1330 Physcomitrium patens HOM05D004323 ORTHO05D005140 5.7e-32 142.5 135 55.6
Pp3c21_20610 Physcomitrium patens HOM05D004323 ORTHO05D005140 2.8e-31 140.2 120 59.2
AUR62036351 Chenopodium quinoa HOM05D004323 ORTHO05D005140 1.8e-30 137.5 179 48.0
BcaB06g27162 Brassica carinata HOM05D004323 ORTHO05D005140 7.0e-30 135.6 132 51.5
FvH4_7g01202 Fragaria vesca HOM05D004323 ORTHO05D005140 5.9e-29 132.5 77 77.9
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 2.2e-28 130.6 283 35.0
CBR_g81558 Chara braunii HOM05D004323 ORTHO05D005140 4.7e-26 122.9 168 44.0
MELO3C018369.2 Cucumis melo HOM05D004323 ORTHO05D005140 1.4e-25 121.3 139 54.0
BcaB05g24642 Brassica carinata HOM05D004323 ORTHO05D005140 5.0e-20 102.8 178 42.1
AL7G52902 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 1.0e-12 78.6 56 64.3
Nn091s42875 Nelumbo nucifera HOM05D004323 ORTHO05D005140 2.5e-11 73.9 111 47.7
FAN16G1718 Fragaria x ananassa HOM05D004323 ORTHO05D005140 9.4e-11 72.0 48 66.7
Sed0022868 Sechium edule HOM05D004323 ORTHO05D005140 5.2e-09 66.2 59 62.7
Duzib138G1259 Durio zibethinus HOM05D004323 ORTHO05D005140 8.8e-09 65.5 165 37.6
Medtr7g114200 Medicago truncatula HOM05D063531 ORTHO05D005140 1.3e-07 61.6 40 70.0
CSS0012754 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 2.2e-07 60.8 140 37.9
QL02p048579 Quercus lobata HOM05D004323 ORTHO05D005140 5.4e-06 56.2 117 39.3


User provided reference genes

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