Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g104930 Medicago truncatula HOM05D006041 ORTHO05D007473 1.3e-236 822.8 464 100.0
Ca_17289_v3 Cicer arietinum L. HOM05D006041 ORTHO05D007473 5.4e-193 677.9 466 78.1
Psat7g009240 Pisum sativum HOM05D006041 ORTHO05D007473 1.7e-191 672.9 478 82.6
TPR.G32714 Trifolium pratense HOM05D006041 ORTHO05D007473 7.2e-182 641.0 476 80.3
Lj4g0006027 Lotus japonicus HOM05D006041 ORTHO05D007473 9.5e-182 640.6 469 77.0
Lalb_Chr05g0222281 Lupinus albus HOM05D006041 ORTHO05D007473 2.5e-174 615.9 475 71.8
Glyma.08G042900 Glycine max HOM05D006041 ORTHO05D007473 3.6e-173 612.1 467 75.2
Phvul.002G319700 Phaseolus vulgaris HOM05D006041 ORTHO05D007473 1.3e-170 603.6 473 71.0
VMungo0251G2799 Vigna mungo HOM05D006041 ORTHO05D007473 3.2e-169 599.0 473 70.8
Glyma.05G235400 Glycine max HOM05D006041 ORTHO05D007473 9.2e-169 597.4 467 74.9
arahy.Tifrunner.gnm1.ann1.BAL5EB Arachis hypogaea HOM05D006041 ORTHO05D007473 2.8e-165 585.9 465 74.2
arahy.Tifrunner.gnm1.ann1.IVEQ23 Arachis hypogaea HOM05D006041 ORTHO05D007473 1.1e-164 583.9 464 73.3
Dinv26256 Davidia involucrata HOM05D006041 ORTHO05D007473 2.1e-152 543.1 476 60.3
COL.COLO4_16567 Corchorus olitorius HOM05D006041 ORTHO05D007473 3.9e-151 538.9 474 60.3
Haze_10912 Corylus avellana HOM05D006041 ORTHO05D007473 6.6e-151 538.1 475 60.6
Prupe.1G331600 Prunus persica HOM05D006041 ORTHO05D007473 2.5e-150 536.2 480 62.9
Thecc.02G290600 Theobroma cacao HOM05D006041 ORTHO05D007473 3.6e-149 532.3 477 64.2
Gorai.005G158800 Gossypium raimondii HOM05D006041 ORTHO05D007473 1.1e-148 530.8 474 61.0
Cfa015002 Carpinus fangiana HOM05D006041 ORTHO05D007473 1.4e-148 530.4 476 59.2
TWI74G1002 Tripterygium wilfordii HOM05D006041 ORTHO05D007473 3.1e-148 529.3 483 59.4
Cpa.g.c27573.2 Carica papaya HOM05D006041 ORTHO05D007473 3.4e-147 525.8 484 59.1
Duzib268G1057 Durio zibethinus HOM05D006041 ORTHO05D007473 4.4e-147 525.4 477 63.9
CsaV3_5G028000 Cucumis sativus L. HOM05D006041 ORTHO05D007473 7.6e-147 524.6 477 58.5
Haze_10913 Corylus avellana HOM05D006041 ORTHO05D007473 1.3e-146 523.9 501 57.5
MD13G1029800 Malus domestica HOM05D006041 ORTHO05D007473 1.4e-145 520.4 491 59.9
Lj6A740T67 Lonicera japonica HOM05D006041 ORTHO05D007473 4.2e-145 518.8 475 60.2
Nn4g24305 Nelumbo nucifera HOM05D006041 ORTHO05D007473 4.2e-145 518.8 475 59.2
PGR142G4228 Punica granatum HOM05D006041 ORTHO05D007473 5.4e-145 518.5 479 62.4
RcHm_v2.0_Chr4g0443331 Rosa chinensis HOM05D006041 ORTHO05D007473 5.4e-145 518.5 478 57.7
MELO3C005281.2 Cucumis melo HOM05D006041 ORTHO05D007473 3.5e-144 515.8 477 58.1
Duzib251G0740 Durio zibethinus HOM05D006041 ORTHO05D007473 7.8e-144 514.6 480 61.2
Eucgr.G02114 Eucalyptus grandis HOM05D006041 ORTHO05D007473 5.1e-143 511.9 474 59.5
Atru.chr11.510 Acer truncatum HOM05D006041 ORTHO05D007473 6.6e-143 511.5 480 62.3
EL10Ac6g15713 Beta vulgaris HOM05D006041 ORTHO05D007473 8.7e-143 511.1 515 56.9
CSS0021041 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 8.7e-143 511.1 478 61.1
CSS0021655 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 8.7e-143 511.1 478 61.1
MD16G1020600 Malus domestica HOM05D006041 ORTHO05D007473 8.7e-143 511.1 490 59.0
Rhsim09G0037900 Rhododendron simsii HOM05D006041 ORTHO05D007473 2.5e-142 509.6 489 58.9
Ciclev10015068m.g Citrus clementina HOM05D006041 ORTHO05D007473 5.6e-142 508.4 483 59.2
Manes.15G133200 Manihot esculenta HOM05D006041 ORTHO05D007473 5.6e-142 508.4 478 59.0
TAR629G0174 Trochodendron aralioides HOM05D006041 ORTHO05D007473 2.1e-141 506.5 480 57.7
Cc11_g08020 Coffea canephora HOM05D006041 ORTHO05D007473 8.1e-141 504.6 487 60.2
SalBow2G0340 Salvia bowleyana HOM05D006041 ORTHO05D007473 1.4e-140 503.8 471 59.7
Gohir.A01G147900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 1.2e-139 500.7 478 58.8
AUR62003915 Chenopodium quinoa HOM05D006041 ORTHO05D007473 1.5e-139 500.4 492 55.7
AL5G10750 Arabidopsis lyrata HOM05D006041 ORTHO05D007473 2.0e-139 500.0 480 61.5
Oeu016281.1 Olea europaea HOM05D006041 ORTHO05D007473 2.0e-139 500.0 483 55.7
FvH4_4g33820 Fragaria vesca HOM05D006041 ORTHO05D007473 2.9e-138 496.1 466 58.2
Aa31LG2G8250 Aethionema arabicum HOM05D006041 ORTHO05D007473 3.8e-138 495.7 476 61.8
DCAR_007323 Daucus carota HOM05D006041 ORTHO05D007473 3.8e-138 495.7 484 56.8
Sabra08G0102300 Salix brachista HOM05D006041 ORTHO05D007473 3.8e-138 495.7 483 57.1
vmacro00556 Vaccinium macrocarpon HOM05D006041 ORTHO05D007473 4.9e-138 495.4 471 58.2
MBI19_g21093_MAGBIO Magnolia biondii HOM05D006041 ORTHO05D007473 1.1e-137 494.2 469 57.8
Carub.0005s0060 Capsella rubella HOM05D006041 ORTHO05D007473 1.4e-137 493.8 481 59.5
Ah.03g145700 Amaranthus hybridus HOM05D006041 ORTHO05D007473 1.9e-137 493.4 491 60.9
AT2G01650 Arabidopsis thaliana HOM05D006041 ORTHO05D007473 5.4e-137 491.9 475 59.4
FAN17G0347 Fragaria x ananassa HOM05D006041 ORTHO05D007473 1.6e-136 490.3 470 56.6
FAN12G3784 Fragaria x ananassa HOM05D006041 ORTHO05D007473 2.7e-136 489.6 472 56.1
Sc03g0001760 Simmondsia chinensis HOM05D006041 ORTHO05D007473 3.5e-136 489.2 499 58.3
Gorai.002G173400 Gossypium raimondii HOM05D006041 ORTHO05D007473 6.0e-136 488.4 481 61.3
Thhalv10004151m.g Eutrema salsugineum HOM05D006041 ORTHO05D007473 7.9e-136 488.0 481 59.7
FAN22G1094 Fragaria x ananassa HOM05D006041 ORTHO05D007473 1.3e-135 487.3 483 55.7
Lsat_1_v5_gn_8_45641 Lactuca sativa HOM05D006041 ORTHO05D007473 2.3e-135 486.5 470 58.9
Gohir.D01G141100 Gossypium hirsutum HOM05D006041 ORTHO05D007473 6.6e-135 485.0 481 60.9
THA.LOC104805081 Tarenaya hassleriana HOM05D006041 ORTHO05D007473 6.6e-135 485.0 486 58.8
CARHR144220 Cardamine hirsuta HOM05D006041 ORTHO05D007473 1.9e-134 483.4 480 60.6
HanXRQChr08g0212441 Helianthus annuus HOM05D006041 ORTHO05D007473 1.9e-134 483.4 480 56.7
Sp2g13100 Schrenkiella parvula HOM05D006041 ORTHO05D007473 2.5e-134 483.0 480 61.0
C07p32270 Brassica napus HOM05D006041 ORTHO05D007473 2.8e-133 479.6 477 59.5
Solyc01g005430.3 Solanum lycopersicum HOM05D006041 ORTHO05D007473 2.8e-133 479.6 472 56.4
BcaC06g34139 Brassica carinata HOM05D006041 ORTHO05D007473 8.1e-133 478.0 479 59.7
BolC7t43765H Brassica oleracea HOM05D006041 ORTHO05D007473 8.1e-133 478.0 479 59.7
Nitab4.5_0009602g0010 Nicotiana tabacum HOM05D006041 ORTHO05D007473 1.8e-132 476.9 475 56.4
Nitab4.5_0000238g0060 Nicotiana tabacum HOM05D006041 ORTHO05D007473 2.4e-132 476.5 474 56.1
SGA_v2.0_scaffold139G35400 Striga asiatica HOM05D006041 ORTHO05D007473 4.0e-132 475.7 486 58.4
ClCG01G006460 Citrullus lanatus HOM05D006041 ORTHO05D007473 9.0e-132 474.6 474 56.1
BcaC06g31287 Brassica carinata HOM05D006041 ORTHO05D007473 1.2e-131 474.2 478 59.0
PGSC0003DMG400032118 Solanum tuberosum HOM05D006041 ORTHO05D007473 1.2e-131 474.2 469 56.3
TAR371G0590 Trochodendron aralioides HOM05D006041 ORTHO05D007473 5.8e-131 471.9 476 55.9
Migut.E00465 Erythranthe guttata HOM05D006041 ORTHO05D007473 9.9e-131 471.1 485 56.9
CANSAT01G0691 Cannabis sativa HOM05D006041 ORTHO05D007473 2.9e-130 469.5 472 59.1
Sopen01g001440 Solanum pennellii HOM05D006041 ORTHO05D007473 1.1e-129 467.6 472 55.9
A06p44210 Brassica napus HOM05D006041 ORTHO05D007473 4.2e-129 465.7 475 59.2
CAN.G1130.10 Capsicum annuum HOM05D006041 ORTHO05D007473 5.5e-129 465.3 529 52.7
BraA06t27296Z Brassica rapa HOM05D006041 ORTHO05D007473 2.1e-128 463.4 477 57.7
Peaxi162Scf00655g00023 Petunia axillaris HOM05D006041 ORTHO05D007473 7.9e-128 461.5 451 55.4
MSTRG.2140 Avicennia marina HOM05D006041 ORTHO05D007473 1.1e-126 457.6 473 57.1
unitig_27.g25310 Utricularia gibba HOM05D006041 ORTHO05D007473 1.8e-124 450.3 471 59.2
Manes.17G082400 Manihot esculenta HOM05D006041 ORTHO05D007473 7.6e-123 444.9 479 53.7
PSO017G0247 Papaver somniferum HOM05D006041 ORTHO05D007473 3.8e-122 442.6 474 51.5
PSO478G4621 Papaver somniferum HOM05D006041 ORTHO05D007473 6.5e-122 441.8 474 51.5
Sed0015632 Sechium edule HOM05D006041 ORTHO05D007473 1.4e-121 440.7 378 59.8
ECA233G3443 Erigeron canadensis HOM05D006041 ORTHO05D007473 2.7e-120 436.4 482 52.3
CiPaw.05G190300 Carya illinoinensis HOM05D006041 ORTHO05D007473 6.0e-120 435.3 398 60.8
ATR0753G012 Amborella trichopoda HOM05D006041 ORTHO05D007473 4.3e-118 429.1 480 51.7
Dinv18641 Davidia involucrata HOM05D006041 ORTHO05D007473 1.1e-113 414.5 431 58.7
QL03p034952 Quercus lobata HOM05D006041 ORTHO05D007473 2.1e-112 410.2 428 53.7
CDE07G0862 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 3.0e-111 406.4 470 50.0
Gohir.D02G141500 Gossypium hirsutum HOM05D006041 ORTHO05D007473 1.1e-108 397.9 418 54.8
AUR62038228 Chenopodium quinoa HOM05D006041 ORTHO05D007473 6.9e-108 395.2 474 49.8
Potri.008G133700 Populus trichocarpa HOM05D006041 ORTHO05D007473 5.9e-107 392.1 437 52.4
Gohir.A03G117900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 2.7e-104 383.3 399 56.4
Sed0013468 Sechium edule HOM05D006041 ORTHO05D007473 2.1e-96 357.1 310 59.4
Aqoxy3G00037 Aquilegia oxysepala HOM05D006041 ORTHO05D007473 5.1e-95 352.4 491 45.4
SGA_v2.0_scaffold151G36726 Striga asiatica HOM05D006041 ORTHO05D007473 3.1e-84 316.6 393 47.1
Zm00001eb099250 Zea mays HOM05D006041 ORTHO05D007473 7.7e-83 312.0 467 44.5
Zm00001eb312180 Zea mays HOM05D006041 ORTHO05D007473 4.1e-76 289.7 480 39.2
SEGI_21307 Sequoiadendron giganteum HOM05D006041 ORTHO05D007473 5.4e-76 289.3 420 41.7
CDE06G1197 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 1.6e-75 287.7 462 39.8
GSVIVG01011678001 Vitis vinifera HOM05D006041 ORTHO05D007473 1.7e-74 284.3 195 73.8
Hma1.2p1_0089F.1_g045430 Hydrangea macrophylla HOM05D006041 ORTHO05D007473 4.0e-71 273.1 311 49.5
Oeu063578.1 Olea europaea HOM05D006041 ORTHO05D007473 1.2e-67 261.5 313 47.9
Lalb_Chr16g0387681 Lupinus albus HOM05D006041 ORTHO05D007473 4.1e-60 236.5 310 48.1
Actinidia34032 Actinidia chinensis HOM05D006041 ORTHO05D007473 9.2e-60 235.3 297 48.1
HPP92_009644 Vanilla planifolia HOM05D006041 ORTHO05D007473 6.6e-58 229.2 239 54.4
Os09g0401600 Oryza sativa ssp. japonica HOM05D006041 ORTHO05D007473 6.2e-56 222.6 225 52.4
Aa31LG3G2990 Aethionema arabicum HOM05D006041 ORTHO05D007473 1.0e-55 221.9 230 56.5
CBR_g3474 Chara braunii HOM05D006041 ORTHO05D007473 5.2e-55 219.5 438 34.9
SGA_v2.0_scaffold151G36757 Striga asiatica HOM05D006041 ORTHO05D007473 8.9e-55 218.8 230 53.9
Mapoly0081s0058 Marchantia polymorpha HOM05D006041 ORTHO05D007473 1.9e-49 201.1 317 37.2
arahy.Tifrunner.gnm1.ann1.I8TFGP Arachis hypogaea HOM05D006041 ORTHO05D007473 3.5e-43 180.3 297 40.7
SGA_v2.0_scaffold151G36758 Striga asiatica HOM05D006041 ORTHO05D007473 4.6e-43 179.9 230 43.5
Psat7g181280 Pisum sativum HOM05D006041 ORTHO05D007473 1.9e-41 174.5 140 67.1
Aa31sc215G20 Aethionema arabicum HOM05D006041 ORTHO05D007473 4.0e-39 166.8 153 62.1
QL10p059701 Quercus lobata HOM05D006041 ORTHO05D007473 4.3e-25 120.2 104 57.7
Actinidia25876 Actinidia chinensis HOM05D001822 ORTHO05D001744 1.5e-22 111.7 115 56.5
CAN.G3.6 Capsicum annuum HOM05D006041 ORTHO05D007473 7.6e-22 109.4 194 39.2
SMO276G0024 Selaginella moellendorffii HOM05D006041 ORTHO05D007473 1.1e-20 105.5 94 55.3
MCO04G546 Micromonas commoda HOM05D006041 ORTHO05D007473 2.8e-16 90.9 321 27.4
Actinidia34031 Actinidia chinensis HOM05D006041 ORTHO05D007473 5.3e-15 86.7 74 58.1
Aqoxy4G01147 Aquilegia oxysepala HOM05D006041 ORTHO05D007473 6.9e-07 59.7 39 76.9
COL.COLO4_15646 Corchorus olitorius HOM05D002747 ORTHO05D003069 6.9e-07 59.7 73 43.8
GSVIVG01003278001 Vitis vinifera HOM05D002747 ORTHO05D003069 1.5e-06 58.5 69 44.9
Carub.0007s3142 Capsella rubella HOM05D006530 ORTHO05D008283 2.0e-06 58.2 117 28.2
Aa31sc37G10 Aethionema arabicum HOM05D002747 ORTHO05D003069 4.5e-06 57.0 55 43.6
RcHm_v2.0_Chr6g0284441 Rosa chinensis HOM05D002747 ORTHO05D003069 4.5e-06 57.0 48 54.2
Actinidia35792 Actinidia chinensis HOM05D004631 ORTHO05D005223 5.8e-06 56.6 129 28.7
CANSAT78G0345 Cannabis sativa HOM05D002747 ORTHO05D003069 5.8e-06 56.6 54 53.7
Cre02.g116650 Chlamydomonas reinhardtii HOM05D034198 ORTHO05D034480 5.8e-06 56.6 63 38.1
BcaC02g09488 Brassica carinata HOM05D006530 ORTHO05D008283 7.6e-06 56.2 93 32.3
FAN15G0280 Fragaria x ananassa HOM05D002747 ORTHO05D003069 7.6e-06 56.2 114 32.5
Peaxi162Scf00753g00333 Petunia axillaris HOM05D002747 ORTHO05D003069 1.0e-05 55.8 51 49.0
TWI18G0343 Tripterygium wilfordii HOM05D002747 ORTHO05D003069 1.0e-05 55.8 55 47.3


User provided reference genes

Program Settings