Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g104850 Medicago truncatula HOM05D005741 ORTHO05D007240 3.0e-287 991.1 487 100.0
Ca_17300_v3 Cicer arietinum L. HOM05D005741 ORTHO05D007240 1.7e-250 869.0 487 86.9
Psat7g009600 Pisum sativum HOM05D005741 ORTHO05D007240 6.1e-248 860.5 485 86.6
TPR.G32686 Trifolium pratense HOM05D005741 ORTHO05D007240 3.7e-245 851.3 486 86.8
Lj2g0010165 Lotus japonicus HOM05D005741 ORTHO05D007240 4.9e-229 797.7 489 79.3
Glyma.13G055300 Glycine max HOM05D005741 ORTHO05D007240 4.4e-222 774.6 487 78.0
Ca_17307_v3 Cicer arietinum L. HOM05D005741 ORTHO05D007240 1.4e-220 769.6 422 87.9
Phvul.004G038100 Phaseolus vulgaris HOM05D005741 ORTHO05D007240 5.6e-217 757.7 486 76.1
VMungo0464G0479 Vigna mungo HOM05D005741 ORTHO05D007240 2.2e-213 745.7 486 74.9
Lalb_Chr07g0190101 Lupinus albus HOM05D005741 ORTHO05D007240 7.1e-212 740.7 491 74.5
arahy.Tifrunner.gnm1.ann1.F09Q1T Arachis hypogaea HOM05D005741 ORTHO05D007240 2.5e-201 705.7 484 71.9
arahy.Tifrunner.gnm1.ann1.915X16 Arachis hypogaea HOM05D005741 ORTHO05D007240 1.8e-199 699.5 484 71.5
CiPaw.11G082200 Carya illinoinensis HOM05D005741 ORTHO05D007240 4.0e-175 618.6 492 63.2
Actinidia02155 Actinidia chinensis HOM05D005741 ORTHO05D007240 6.5e-173 611.3 482 62.2
QL12p011266 Quercus lobata HOM05D005741 ORTHO05D007240 8.4e-173 610.9 490 62.0
Haze_07941 Corylus avellana HOM05D005741 ORTHO05D007240 1.4e-172 610.1 488 62.9
Gohir.D09G191200 Gossypium hirsutum HOM05D005741 ORTHO05D007240 6.0e-171 604.7 492 64.0
Thecc.03G247800 Theobroma cacao HOM05D005741 ORTHO05D007240 1.3e-170 603.6 491 62.5
CANSAT21G0669 Cannabis sativa HOM05D005741 ORTHO05D007240 2.3e-170 602.8 486 62.1
RcHm_v2.0_Chr7g0204071 Rosa chinensis HOM05D005741 ORTHO05D007240 6.7e-170 601.3 488 63.3
Gorai.006G214000 Gossypium raimondii HOM05D005741 ORTHO05D007240 8.7e-170 600.9 492 64.0
TWI81G0674 Tripterygium wilfordii HOM05D005741 ORTHO05D007240 2.5e-169 599.4 489 60.5
CSS0012403 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 3.3e-169 599.0 486 61.1
Duzib205G0633 Durio zibethinus HOM05D005741 ORTHO05D007240 3.3e-169 599.0 428 68.0
Gohir.A09G196600 Gossypium hirsutum HOM05D005741 ORTHO05D007240 4.3e-169 598.6 484 62.6
Gorai.003G175200 Gossypium raimondii HOM05D005741 ORTHO05D007240 4.3e-169 598.6 493 60.6
Prupe.5G065000 Prunus persica HOM05D005741 ORTHO05D007240 5.7e-169 598.2 489 61.8
Lj2A224T24 Lonicera japonica HOM05D005741 ORTHO05D007240 9.6e-169 597.4 476 61.6
Sabra03G0049500 Salix brachista HOM05D005741 ORTHO05D007240 9.6e-169 597.4 441 65.1
Duzib084G1038 Durio zibethinus HOM05D005741 ORTHO05D007240 3.7e-168 595.5 430 67.9
Manes.01G083800 Manihot esculenta HOM05D005741 ORTHO05D007240 3.7e-168 595.5 471 63.3
Potri.003G079400 Populus trichocarpa HOM05D005741 ORTHO05D007240 6.3e-168 594.7 441 65.1
TWI15G0579 Tripterygium wilfordii HOM05D005741 ORTHO05D007240 1.8e-167 593.2 490 61.4
Eucgr.E00405 Eucalyptus grandis HOM05D005741 ORTHO05D007240 3.1e-167 592.4 469 60.8
FvH4_5g19490 Fragaria vesca HOM05D005741 ORTHO05D007240 6.9e-167 591.3 490 60.6
Gohir.D03G165500 Gossypium hirsutum HOM05D005741 ORTHO05D007240 6.9e-167 591.3 493 60.0
THA.LOC104806667 Tarenaya hassleriana HOM05D005741 ORTHO05D007240 9.0e-167 590.9 480 60.6
FAN13G2335 Fragaria x ananassa HOM05D005741 ORTHO05D007240 1.2e-166 590.5 490 60.8
MELO3C005514.2 Cucumis melo HOM05D005741 ORTHO05D007240 1.0e-165 587.4 488 59.0
FAN18G1401 Fragaria x ananassa HOM05D005741 ORTHO05D007240 2.9e-165 585.9 490 60.2
Thhalv10024957m.g Eutrema salsugineum HOM05D005741 ORTHO05D007240 5.0e-165 585.1 483 60.7
FAN18G3259 Fragaria x ananassa HOM05D005741 ORTHO05D007240 8.5e-165 584.3 490 60.0
CsaV3_5G004450 Cucumis sativus L. HOM05D005741 ORTHO05D007240 1.1e-164 583.9 442 63.1
Atru.chr9.1271 Acer truncatum HOM05D005741 ORTHO05D007240 7.2e-164 581.3 485 59.6
Sed0015384 Sechium edule HOM05D005741 ORTHO05D007240 7.2e-164 581.3 479 59.7
GSVIVG01005817001 Vitis vinifera HOM05D005741 ORTHO05D007240 7.2e-164 581.3 450 63.6
FAN04G2833 Fragaria x ananassa HOM05D005741 ORTHO05D007240 2.7e-163 579.3 490 60.2
DCAR_008509 Daucus carota HOM05D005741 ORTHO05D007240 6.1e-163 578.2 481 59.3
vmacro00008 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 2.5e-161 572.8 534 55.1
Ciclev10019844m.g Citrus clementina HOM05D005741 ORTHO05D007240 4.3e-161 572.0 490 58.8
Aa31sc151G50 Aethionema arabicum HOM05D005741 ORTHO05D007240 7.4e-161 571.2 481 60.7
Sopen08g026870 Solanum pennellii HOM05D005741 ORTHO05D007240 9.7e-161 570.9 479 59.3
PGSC0003DMG400004829 Solanum tuberosum HOM05D005741 ORTHO05D007240 9.7e-161 570.9 479 59.3
Solyc08g078380.3 Solanum lycopersicum HOM05D005741 ORTHO05D007240 4.8e-160 568.5 479 58.9
HanXRQChr16g0501101 Helianthus annuus HOM05D005741 ORTHO05D007240 2.4e-159 566.2 483 57.6
C01p25020 Brassica napus HOM05D005741 ORTHO05D007240 3.1e-159 565.8 488 59.2
BolC1t02446H Brassica oleracea HOM05D005741 ORTHO05D007240 3.1e-159 565.8 488 59.2
COL.COLO4_37119 Corchorus olitorius HOM05D005741 ORTHO05D007240 3.1e-159 565.8 406 67.0
Nn6g33867 Nelumbo nucifera HOM05D005741 ORTHO05D007240 4.1e-159 565.5 481 57.6
Nitab4.5_0001381g0010 Nicotiana tabacum HOM05D005741 ORTHO05D007240 6.9e-159 564.7 432 63.2
CARHR224030 Cardamine hirsuta HOM05D005741 ORTHO05D007240 4.5e-158 562.0 480 59.0
BcaNung00094 Brassica carinata HOM05D005741 ORTHO05D007240 7.7e-158 561.2 483 59.2
CAN.G1178.14 Capsicum annuum HOM05D005741 ORTHO05D007240 2.2e-157 559.7 430 64.2
BraA01t01920Z Brassica rapa HOM05D005741 ORTHO05D007240 2.9e-157 559.3 484 58.7
MD04G1060600 Malus domestica HOM05D005741 ORTHO05D007240 3.8e-157 558.9 480 60.2
Nitab4.5_0003050g0020 Nicotiana tabacum HOM05D005741 ORTHO05D007240 3.8e-157 558.9 480 58.1
Peaxi162Scf00214g00035 Petunia axillaris HOM05D005741 ORTHO05D007240 6.5e-157 558.1 476 58.8
BcaC09g50473 Brassica carinata HOM05D005741 ORTHO05D007240 1.4e-156 557.0 488 58.4
A01p19940 Brassica napus HOM05D005741 ORTHO05D007240 1.4e-156 557.0 484 58.7
AL7G37290 Arabidopsis lyrata HOM05D005741 ORTHO05D007240 1.9e-156 556.6 480 58.5
AT4G17430 Arabidopsis thaliana HOM05D005741 ORTHO05D007240 5.5e-156 555.1 482 58.9
Carub.0007s2399 Capsella rubella HOM05D005741 ORTHO05D007240 5.5e-156 555.1 442 61.8
FAN08G2842 Fragaria x ananassa HOM05D005741 ORTHO05D007240 3.6e-155 552.4 490 58.8
EL10Ac1g01729 Beta vulgaris HOM05D005741 ORTHO05D007240 1.1e-153 547.4 486 56.2
Migut.A01137 Erythranthe guttata HOM05D005741 ORTHO05D007240 2.6e-153 546.2 481 57.4
ClCG01G004250 Citrullus lanatus HOM05D005741 ORTHO05D007240 5.7e-153 545.0 481 56.8
CDE09G0915 Ceratophyllum demersum HOM05D005741 ORTHO05D007240 2.8e-152 542.7 466 58.4
Sc22g0001010 Simmondsia chinensis HOM05D005741 ORTHO05D007240 1.8e-151 540.0 442 60.4
CDE02G0403 Ceratophyllum demersum HOM05D005741 ORTHO05D007240 3.1e-151 539.3 466 57.9
Lsat_1_v5_gn_6_59361 Lactuca sativa HOM05D005741 ORTHO05D007240 2.2e-149 533.1 492 55.3
SGA_v2.0_scaffold199G41222 Striga asiatica HOM05D005741 ORTHO05D007240 2.9e-149 532.7 463 57.0
PSO063G3551 Papaver somniferum HOM05D005741 ORTHO05D007240 6.5e-149 531.6 489 55.6
PSO782G4316 Papaver somniferum HOM05D005741 ORTHO05D007240 6.5e-149 531.6 488 55.7
Aqoxy3G02814 Aquilegia oxysepala HOM05D005741 ORTHO05D007240 4.7e-147 525.4 424 57.8
Thhalv10000864m.g Eutrema salsugineum HOM05D005741 ORTHO05D007240 1.8e-146 523.5 446 58.1
Rhsim03G0144800 Rhododendron simsii HOM05D005741 ORTHO05D007240 1.1e-145 520.8 435 58.6
Cc08_g12130 Coffea canephora HOM05D005741 ORTHO05D007240 5.7e-145 518.5 448 59.2
SalBow5G2168 Salvia bowleyana HOM05D005741 ORTHO05D007240 2.9e-141 506.1 417 59.7
unitig_0.g1051 Utricularia gibba HOM05D005741 ORTHO05D007240 2.9e-141 506.1 427 56.4
AUR62022412 Chenopodium quinoa HOM05D005741 ORTHO05D007240 5.0e-141 505.4 400 60.5
SEGI_37405 Sequoiadendron giganteum HOM05D005741 ORTHO05D007240 2.1e-139 500.0 485 52.4
TAR629G0196 Trochodendron aralioides HOM05D005741 ORTHO05D007240 2.1e-139 500.0 402 60.7
AUR62042169 Chenopodium quinoa HOM05D005741 ORTHO05D007240 8.0e-139 498.0 400 59.8
ATR0057G109 Amborella trichopoda HOM05D005741 ORTHO05D007240 5.2e-138 495.4 502 51.0
PGR042G2173 Punica granatum HOM05D005741 ORTHO05D007240 7.5e-137 491.5 487 51.7
Hund30921 Selenicereus undatus HOM05D005741 ORTHO05D007240 7.5e-137 491.5 424 56.8
Os10g0561200 Oryza sativa ssp. japonica HOM05D005741 ORTHO05D007240 1.7e-136 490.3 445 55.3
SHI07684 Sapria himalayana HOM05D005741 ORTHO05D007240 2.8e-136 489.6 479 52.2
Hund20780 Selenicereus undatus HOM05D005741 ORTHO05D007240 6.3e-136 488.4 424 56.4
Zm00001eb023170 Zea mays HOM05D005741 ORTHO05D007240 1.1e-135 487.6 451 53.9
Gohir.A03G006700 Gossypium hirsutum HOM05D005741 ORTHO05D007240 3.6e-131 472.6 374 62.6
ECA233G5769 Erigeron canadensis HOM05D000263 ORTHO05D000213 2.8e-128 463.0 453 51.7
Dinv03497 Davidia involucrata HOM05D005741 ORTHO05D007240 3.0e-122 443.0 349 62.5
Hma1.2p1_1136F.1_g260550 Hydrangea macrophylla HOM05D005741 ORTHO05D007240 8.8e-122 441.4 346 60.4
Oeu036348.1 Olea europaea HOM05D005741 ORTHO05D007240 8.3e-120 434.9 347 60.2
CSS0035552 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 3.1e-119 433.0 345 62.3
TAR365G0013 Trochodendron aralioides HOM05D005741 ORTHO05D007240 1.3e-117 427.6 349 60.7
Lj1g0021170 Lotus japonicus HOM05D005741 ORTHO05D007240 7.0e-103 378.6 422 52.1
Cc11_g11020 Coffea canephora HOM05D005741 ORTHO05D007240 2.5e-100 370.2 285 63.9
AagrBONN_evm.TU.Sc2ySwM_228.4051__4052 Anthoceros agrestis HOM05D005741 ORTHO05D007240 1.9e-87 327.4 456 41.9
SMO358G0726 Selaginella moellendorffii HOM05D005741 ORTHO05D007240 1.1e-84 318.2 424 41.0
QL05p056282 Quercus lobata HOM05D005741 ORTHO05D007240 1.8e-82 310.8 404 43.1
Dinv39172 Davidia involucrata HOM05D005741 ORTHO05D007240 4.9e-80 302.8 226 65.0
Aa31LG6G180 Aethionema arabicum HOM05D005741 ORTHO05D007240 8.7e-77 292.0 294 53.7
Glyma.19G032167 Glycine max HOM05D005741 ORTHO05D007240 1.4e-74 284.6 182 74.2
QL05p056241 Quercus lobata HOM05D005741 ORTHO05D007240 6.4e-72 275.8 203 65.5
QL05p056380 Quercus lobata HOM05D005741 ORTHO05D007240 7.1e-71 272.3 215 62.8
Mapoly0027s0023 Marchantia polymorpha HOM05D005741 ORTHO05D007240 1.6e-67 261.2 466 36.1
MD06G1054000 Malus domestica HOM05D005741 ORTHO05D007240 2.1e-67 260.8 220 60.0
Glyma.19G032233 Glycine max HOM05D005741 ORTHO05D007240 1.1e-58 231.9 169 70.4
Sed0012710 Sechium edule HOM05D005741 ORTHO05D007240 1.1e-52 211.8 336 39.0
Mapoly0048s0017 Marchantia polymorpha HOM05D005741 ORTHO05D007240 3.1e-50 203.8 456 30.5
CSS0043083 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 2.5e-44 184.1 168 55.4
vmacro00009 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 1.4e-39 168.3 195 47.7
vmacro00011 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 3.7e-35 153.7 280 36.8
Pp3c6_17590 Physcomitrium patens HOM05D005741 ORTHO05D007240 9.1e-34 149.1 236 37.3
Actinidia14404 Actinidia chinensis HOM05D005741 ORTHO05D007240 2.7e-30 137.5 334 30.2
CSS0008948 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 9.1e-26 122.5 110 55.5
CSS0012087 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 1.6e-25 121.7 114 53.5
CSS0007358 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 5.9e-25 119.8 115 53.0
Aa31LG6G170 Aethionema arabicum HOM05D005741 ORTHO05D007240 1.8e-21 108.2 110 48.2
Pp3c6_17579 Physcomitrium patens HOM05D005741 ORTHO05D007240 1.2e-20 105.5 78 59.0
Oeu057691.1 Olea europaea HOM05D005741 ORTHO05D007240 2.2e-19 101.3 76 61.8
AL7G37230 Arabidopsis lyrata HOM05D005741 ORTHO05D007240 3.0e-13 80.9 83 53.0
Hma1.2p1_2773F.1_g328260 Hydrangea macrophylla HOM05D005741 ORTHO05D228475 7.5e-12 76.3 82 47.6


User provided reference genes

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