Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g103910 Medicago truncatula HOM05D000005 ORTHO05D000012 2.3e-81 305.4 149 100.0
Medtr8g105820 Medicago truncatula HOM05D000005 ORTHO05D017065 4.1e-30 135.2 180 45.6
TPR.G21687 Trifolium pratense HOM05D000005 ORTHO05D000012 1.9e-27 126.3 149 52.3
Glyma.01G033000 Glycine max HOM05D000005 ORTHO05D000012 2.0e-24 116.3 174 43.1
Lj4g0021289 Lotus japonicus HOM05D000005 ORTHO05D000012 6.4e-23 111.3 173 40.5
Lj4g0019720 Lotus japonicus HOM05D000005 ORTHO05D000012 8.4e-23 110.9 106 58.5
Medtr1g069545 Medicago truncatula HOM05D000622 ORTHO05D000012 4.2e-22 108.6 178 38.2
LjContig00081g0000067 Lotus japonicus HOM05D000005 ORTHO05D000012 5.4e-22 108.2 106 57.5
Lj3g0005055 Lotus japonicus HOM05D000005 ORTHO05D017065 2.5e-19 99.4 161 38.5
TPR.G6261 Trifolium pratense HOM05D000005 ORTHO05D000012 3.3e-19 99.0 170 38.8
Medtr7g056363 Medicago truncatula HOM05D000005 ORTHO05D017065 5.6e-19 98.2 161 40.4
TPR.G2237 Trifolium pratense HOM05D000005 ORTHO05D000012 1.6e-18 96.7 151 37.1
TPR.G6207 Trifolium pratense HOM05D000005 ORTHO05D000012 2.8e-18 95.9 151 35.8
Phvul.002G323708 Phaseolus vulgaris HOM05D000005 ORTHO05D000012 3.6e-18 95.5 139 41.0
TPR.G1317 Trifolium pratense HOM05D000005 ORTHO05D000012 3.6e-18 95.5 170 37.6
arahy.Tifrunner.gnm1.ann1.38ZPK2 Arachis hypogaea HOM05D000005 ORTHO05D000012 6.2e-18 94.7 169 38.5
VMungo0251G2835 Vigna mungo HOM05D000005 ORTHO05D000012 6.2e-18 94.7 178 36.0
TPR.G21428 Trifolium pratense HOM05D000005 ORTHO05D000012 6.9e-17 91.3 158 34.2
Lj1g0015996 Lotus japonicus HOM05D000005 ORTHO05D000012 9.0e-17 90.9 179 36.3
arahy.Tifrunner.gnm1.ann1.0MD4T6 Arachis hypogaea HOM05D000005 ORTHO05D000012 1.2e-16 90.5 108 46.3
arahy.Tifrunner.gnm1.ann1.Q36DTI Arachis hypogaea HOM05D000005 ORTHO05D004370 2.0e-16 89.7 107 46.7
Lj1g0021926 Lotus japonicus HOM05D000005 ORTHO05D000012 2.0e-16 89.7 180 36.1
TPR.G19261 Trifolium pratense HOM05D000005 ORTHO05D000012 2.6e-16 89.4 107 45.8
TPR.G21427 Trifolium pratense HOM05D000005 ORTHO05D000012 4.5e-16 88.6 192 32.3
Phvul.002G323300 Phaseolus vulgaris HOM05D000005 ORTHO05D000012 6.4e-15 84.7 106 46.2
Glyma.01G033200 Glycine max HOM05D000005 ORTHO05D000012 1.9e-14 83.2 107 43.9
VMungo0251G2301 Vigna mungo HOM05D000005 ORTHO05D000012 1.9e-14 83.2 105 42.9
Glyma.01G033300 Glycine max HOM05D000005 ORTHO05D000012 4.2e-14 82.0 107 43.0
Phvul.002G323000 Phaseolus vulgaris HOM05D000005 ORTHO05D000012 5.4e-14 81.6 105 44.8
Phvul.002G323704 Phaseolus vulgaris HOM05D000005 ORTHO05D000012 9.3e-14 80.9 104 44.2
VMungo0720G2158 Vigna mungo HOM05D000005 ORTHO05D000012 9.3e-14 80.9 106 44.3
Lj4g0003289 Lotus japonicus HOM05D000005 ORTHO05D017065 1.2e-13 80.5 111 45.0
Phvul.002G323100 Phaseolus vulgaris HOM05D000005 ORTHO05D000012 1.6e-13 80.1 104 45.2
Lj4g0000912 Lotus japonicus HOM05D000005 ORTHO05D000012 2.7e-13 79.3 104 46.2
VMungo0251G1710 Vigna mungo HOM05D000005 ORTHO05D000012 3.5e-13 79.0 105 41.9
Phvul.002G323712 Phaseolus vulgaris HOM05D000005 ORTHO05D000012 1.3e-12 77.0 105 41.0
Lj4g0013302 Lotus japonicus HOM05D000005 ORTHO05D000012 1.8e-12 76.6 94 43.6
Phvul.002G323400 Phaseolus vulgaris HOM05D000005 ORTHO05D000012 3.0e-12 75.9 103 43.7
TPR.G11880 Trifolium pratense HOM05D000005 ORTHO05D009360 3.0e-12 75.9 100 46.0
Lj4g0004538 Lotus japonicus HOM05D000005 ORTHO05D017065 5.1e-12 75.1 167 34.1
Lj1g0020006 Lotus japonicus HOM05D000005 ORTHO05D000012 6.7e-12 74.7 90 43.3
Phvul.002G323200 Phaseolus vulgaris HOM05D000005 ORTHO05D000012 8.7e-12 74.3 105 42.9
Medtr7g056367 Medicago truncatula HOM05D000005 ORTHO05D000012 1.3e-10 70.5 145 33.1
arahy.Tifrunner.gnm1.ann1.3RA443 Arachis hypogaea HOM05D000005 ORTHO05D000012 2.4e-09 66.2 160 29.4
TPR.G7037 Trifolium pratense HOM05D000005 ORTHO05D000012 2.0e-08 63.2 65 49.2
MELO3C030973.2 Cucumis melo HOM05D000005 ORTHO05D000012 5.8e-08 61.6 178 30.9
Gohir.D11G295200 Gossypium hirsutum HOM05D000005 ORTHO05D000012 1.7e-07 60.1 165 26.7
Gorai.007G318500 Gossypium raimondii HOM05D000005 ORTHO05D000012 1.7e-07 60.1 165 26.7
FAN03G3058 Fragaria x ananassa HOM05D000005 ORTHO05D000012 2.9e-07 59.3 148 31.8
Potri.019G070001 Populus trichocarpa HOM05D000005 ORTHO05D000012 2.9e-07 59.3 180 28.3
Potri.019G070565 Populus trichocarpa HOM05D000005 ORTHO05D000012 2.9e-07 59.3 180 28.3
Gorai.007G318900 Gossypium raimondii HOM05D000005 ORTHO05D000012 3.8e-07 58.9 165 27.3
Potri.019G069600 Populus trichocarpa HOM05D000005 ORTHO05D000012 3.8e-07 58.9 189 26.5
Gohir.A11G282526 Gossypium hirsutum HOM05D000005 ORTHO05D000012 4.9e-07 58.5 166 26.5
Gohir.D11G295400 Gossypium hirsutum HOM05D000005 ORTHO05D000012 4.9e-07 58.5 165 27.3
Lj4g0017223 Lotus japonicus HOM05D000005 ORTHO05D017065 4.9e-07 58.5 60 51.7
Sed0018635 Sechium edule HOM05D000005 ORTHO05D000012 4.9e-07 58.5 178 29.2
TPR.G19257 Trifolium pratense HOM05D000005 ORTHO05D000012 4.9e-07 58.5 38 71.1
Potri.019G070393 Populus trichocarpa HOM05D000005 ORTHO05D000012 6.4e-07 58.2 157 29.3
Phvul.002G323404 Phaseolus vulgaris HOM05D000005 ORTHO05D000012 1.4e-06 57.0 43 65.1
RcHm_v2.0_Chr1g0372541 Rosa chinensis HOM05D000005 ORTHO05D000012 1.9e-06 56.6 148 29.1
CsaV3_3G041210 Cucumis sativus L. HOM05D000005 ORTHO05D000012 3.2e-06 55.8 184 28.8
arahy.Tifrunner.gnm1.ann1.NDL7HJ Arachis hypogaea HOM05D000005 ORTHO05D000012 4.2e-06 55.5 55 54.5
Lj1g0011637 Lotus japonicus HOM05D001926 ORTHO05D000012 4.2e-06 55.5 93 36.6
Ciclev10023905m.g Citrus clementina HOM05D000005 ORTHO05D000012 5.5e-06 55.1 155 27.7
FAN01G2923 Fragaria x ananassa HOM05D000005 ORTHO05D000012 5.5e-06 55.1 161 31.7
FvH4_7g17700 Fragaria vesca HOM05D000005 ORTHO05D000012 7.1e-06 54.7 154 26.6
FAN06G0883 Fragaria x ananassa HOM05D000005 ORTHO05D000012 7.1e-06 54.7 154 26.6
FAN06G1031 Fragaria x ananassa HOM05D000005 ORTHO05D000012 7.1e-06 54.7 154 26.6
Lj1g0024028 Lotus japonicus HOM05D000005 ORTHO05D000012 7.1e-06 54.7 137 31.4
BolC1t05785H Brassica oleracea HOM05D000005 ORTHO05D000449 9.3e-06 54.3 99 34.3
CSS0035728 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 9.3e-06 54.3 153 24.8


User provided reference genes

Program Settings