Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g103020 Medicago truncatula HOM05D005563 ORTHO05D006667 9.6e-242 839.7 421 100.0
Psat7g014680 Pisum sativum HOM05D005563 ORTHO05D006667 6.5e-206 720.7 437 84.7
TPR.G23443 Trifolium pratense HOM05D005563 ORTHO05D006667 6.1e-196 687.6 424 83.7
Lj3g0011209 Lotus japonicus HOM05D005563 ORTHO05D006667 5.4e-184 647.9 427 76.1
Glyma.13G312100 Glycine max HOM05D005563 ORTHO05D006667 2.8e-180 635.6 429 75.3
Phvul.005G118600 Phaseolus vulgaris HOM05D005563 ORTHO05D006667 1.1e-168 597.0 429 71.6
arahy.Tifrunner.gnm1.ann1.QV839S Arachis hypogaea HOM05D005563 ORTHO05D006667 3.2e-168 595.5 427 71.4
Lalb_Chr24g0393341 Lupinus albus HOM05D005563 ORTHO05D006667 1.8e-163 579.7 436 69.5
VMungo1080G1448 Vigna mungo HOM05D005563 ORTHO05D006667 1.2e-162 577.0 424 72.4
arahy.Tifrunner.gnm1.ann1.NB4SND Arachis hypogaea HOM05D005563 ORTHO05D006667 3.1e-147 525.8 448 64.1
TPR.G11352 Trifolium pratense HOM05D005563 ORTHO05D006667 1.2e-146 523.9 308 85.1
RcHm_v2.0_Chr6g0249561 Rosa chinensis HOM05D005563 ORTHO05D006667 9.6e-133 477.6 422 60.4
Prupe.8G002700 Prunus persica HOM05D005563 ORTHO05D006667 1.2e-130 470.7 419 60.1
CiPaw.04G008700 Carya illinoinensis HOM05D005563 ORTHO05D006667 2.0e-130 469.9 416 58.9
QL09p001227 Quercus lobata HOM05D005563 ORTHO05D006667 2.0e-130 469.9 414 60.1
Cfa007306 Carpinus fangiana HOM05D005563 ORTHO05D006667 3.8e-129 465.7 417 59.7
GSVIVG01037139001 Vitis vinifera HOM05D005563 ORTHO05D006667 1.4e-128 463.8 421 60.6
Dinv22054 Davidia involucrata HOM05D005563 ORTHO05D006667 7.1e-128 461.5 423 58.9
CANSAT64G1925 Cannabis sativa HOM05D005563 ORTHO05D006667 9.3e-128 461.1 419 58.2
Potri.013G094800 Populus trichocarpa HOM05D005563 ORTHO05D006667 1.2e-127 460.7 430 57.9
Rhsim01G0058900 Rhododendron simsii HOM05D005563 ORTHO05D006667 2.7e-127 459.5 418 58.6
Sabra13G0080900 Salix brachista HOM05D005563 ORTHO05D006667 2.7e-127 459.5 420 57.9
Thecc.05G149300 Theobroma cacao HOM05D005563 ORTHO05D006667 7.9e-127 458.0 419 58.7
Actinidia29363 Actinidia chinensis HOM05D005563 ORTHO05D006667 5.1e-126 455.3 417 57.3
CSS0040007 Camellia sinensis var. sinensis HOM05D005563 ORTHO05D006667 6.3e-124 448.4 425 57.6
MD10G1001500 Malus domestica HOM05D005563 ORTHO05D006667 2.4e-123 446.4 412 59.2
Rhsim01G0059200 Rhododendron simsii HOM05D005563 ORTHO05D006667 2.4e-123 446.4 424 57.5
TAR628G0232 Trochodendron aralioides HOM05D005563 ORTHO05D006667 2.4e-123 446.4 429 56.6
Ciclev10020232m.g Citrus clementina HOM05D005563 ORTHO05D006667 3.1e-123 446.0 419 57.0
CSS0002080 Camellia sinensis var. sinensis HOM05D005563 ORTHO05D006667 5.3e-123 445.3 425 57.2
DCAR_010113 Daucus carota HOM05D005563 ORTHO05D006667 2.0e-122 443.4 417 56.8
Duzib177G0343 Durio zibethinus HOM05D005563 ORTHO05D006667 2.0e-122 443.4 420 57.4
DCAR_001180 Daucus carota HOM05D005563 ORTHO05D006667 2.6e-122 443.0 418 56.7
FvH4_2g00270 Fragaria vesca HOM05D005563 ORTHO05D006667 1.0e-121 441.0 424 55.9
Nn5g27214 Nelumbo nucifera HOM05D005563 ORTHO05D006667 1.7e-121 440.3 427 54.3
Ca_17321_v3 Cicer arietinum L. HOM05D005563 ORTHO05D006667 3.8e-121 439.1 317 75.4
vmacro07741 Vaccinium macrocarpon HOM05D005563 ORTHO05D006667 3.8e-121 439.1 419 57.0
Oeu019017.1 Olea europaea HOM05D005563 ORTHO05D006667 1.2e-119 434.1 420 55.2
PGR044G0823 Punica granatum HOM05D005563 ORTHO05D006667 1.0e-118 431.0 423 56.7
Cc02_g22680 Coffea canephora HOM05D005563 ORTHO05D006667 1.4e-118 430.6 416 56.2
Gorai.009G262600 Gossypium raimondii HOM05D005563 ORTHO05D006667 3.0e-118 429.5 413 56.2
Oeu009445.1 Olea europaea HOM05D005563 ORTHO05D006667 2.5e-117 426.4 426 54.5
Haze_14007 Corylus avellana HOM05D005563 ORTHO05D006667 7.4e-117 424.9 531 47.8
Atru.chr13.2584 Acer truncatum HOM05D005563 ORTHO05D006667 2.2e-116 423.3 422 54.7
FAN24G3564 Fragaria x ananassa HOM05D005563 ORTHO05D006667 2.2e-116 423.3 447 52.8
Nitab4.5_0006591g0020 Nicotiana tabacum HOM05D005563 ORTHO05D006667 1.1e-115 421.0 415 54.5
DCAR_027509 Daucus carota HOM05D005563 ORTHO05D006667 2.4e-115 419.9 416 54.8
Aqoxy1G00244 Aquilegia oxysepala HOM05D005563 ORTHO05D006667 6.9e-115 418.3 422 50.5
Eucgr.G00337 Eucalyptus grandis HOM05D005563 ORTHO05D006667 3.8e-113 412.5 414 55.6
Migut.G00338 Erythranthe guttata HOM05D005563 ORTHO05D006667 3.2e-112 409.5 414 52.4
CAN.G587.23 Capsicum annuum HOM05D005563 ORTHO05D006667 4.2e-112 409.1 413 54.5
BcaC08g45784 Brassica carinata HOM05D005563 ORTHO05D006667 7.2e-112 408.3 417 53.0
C06p35680 Brassica napus HOM05D005563 ORTHO05D006667 1.2e-111 407.5 417 53.2
ClCG11G000440 Citrullus lanatus HOM05D005563 ORTHO05D006667 2.1e-111 406.8 418 53.3
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 1.4e-110 404.1 402 54.0
BolC6t38691H Brassica oleracea HOM05D005563 ORTHO05D006667 1.8e-110 403.7 421 52.7
Sp5g26490 Schrenkiella parvula HOM05D005563 ORTHO05D006667 1.8e-110 403.7 421 53.2
PGSC0003DMG400014277 Solanum tuberosum HOM05D005563 ORTHO05D006667 2.3e-110 403.3 416 54.8
A07p30780 Brassica napus HOM05D005563 ORTHO05D006667 5.1e-110 402.1 415 52.8
Solyc03g026100.1 Solanum lycopersicum HOM05D005563 ORTHO05D006667 5.1e-110 402.1 416 54.8
CAN.G769.9 Capsicum annuum HOM05D005563 ORTHO05D006667 8.8e-110 401.4 418 53.6
Thhalv10018623m.g Eutrema salsugineum HOM05D005563 ORTHO05D006667 1.1e-109 401.0 412 52.2
AL1G12770 Arabidopsis lyrata HOM05D005563 ORTHO05D006667 1.5e-109 400.6 415 52.5
BcaB03g14889 Brassica carinata HOM05D005563 ORTHO05D006667 2.0e-109 400.2 422 51.7
AL2G30920 Arabidopsis lyrata HOM05D005563 ORTHO05D006667 3.3e-109 399.4 418 52.4
THA.LOC104825030 Tarenaya hassleriana HOM05D005563 ORTHO05D006667 1.3e-108 397.5 416 51.9
PSO761G0451 Papaver somniferum HOM05D005563 ORTHO05D006667 6.3e-108 395.2 428 51.4
BraA07t30715Z Brassica rapa HOM05D005563 ORTHO05D006667 1.1e-107 394.4 419 52.0
CARHR064610 Cardamine hirsuta HOM05D005563 ORTHO05D006667 1.1e-107 394.4 415 52.0
BcaB03g15600 Brassica carinata HOM05D005563 ORTHO05D006667 1.8e-107 393.7 428 50.9
Aa31LG4G9220 Aethionema arabicum HOM05D005563 ORTHO05D006667 3.1e-107 392.9 418 51.2
CsaV3_6G042510 Cucumis sativus L. HOM05D005563 ORTHO05D006667 3.1e-107 392.9 418 52.4
AT5G24670 Arabidopsis thaliana HOM05D005563 ORTHO05D006667 2.6e-106 389.8 417 51.3
SGA_v2.0_scaffold277G46672 Striga asiatica HOM05D005563 ORTHO05D006667 7.7e-106 388.3 410 53.4
Sopen03g004940 Solanum pennellii HOM05D005563 ORTHO05D006667 1.0e-105 387.9 416 53.8
Hund26934 Selenicereus undatus HOM05D005563 ORTHO05D006667 2.2e-105 386.7 417 51.6
PSO170G2533 Papaver somniferum HOM05D005563 ORTHO05D006667 3.2e-104 382.9 418 51.7
Carub.0002s1819 Capsella rubella HOM05D005563 ORTHO05D006667 4.2e-104 382.5 416 50.5
Lsat_1_v5_gn_4_170241 Lactuca sativa HOM05D005563 ORTHO05D006667 7.2e-104 381.7 412 50.7
MBI14_g08074_MAGBIO Magnolia biondii HOM05D005563 ORTHO05D006667 2.7e-103 379.8 399 52.9
Carub.0004s0662 Capsella rubella HOM05D005563 ORTHO05D006667 6.7e-102 375.2 406 51.7
Manes.18G108800 Manihot esculenta HOM05D005563 ORTHO05D006667 8.8e-102 374.8 355 56.3
TAR633G2728 Trochodendron aralioides HOM05D005563 ORTHO05D006667 5.3e-99 365.5 371 53.4
PSO017G5640 Papaver somniferum HOM05D005563 ORTHO05D006667 1.3e-97 360.9 425 48.7
Nitab4.5_0001489g0080 Nicotiana tabacum HOM05D005563 ORTHO05D006667 8.5e-97 358.2 373 53.4
PSO407G0243 Papaver somniferum HOM05D005563 ORTHO05D006667 1.5e-96 357.5 422 50.0
Peaxi162Scf00078g01133 Petunia axillaris HOM05D005563 ORTHO05D006667 4.4e-93 345.9 358 53.9
TWI18G0160 Tripterygium wilfordii HOM05D005563 ORTHO05D006667 7.5e-93 345.1 432 48.6
ATR0580G344 Amborella trichopoda HOM05D005563 ORTHO05D006667 9.7e-93 344.7 421 47.0
Nitab4.5_0000079g0140 Nicotiana tabacum HOM05D005563 ORTHO05D006667 9.7e-93 344.7 418 49.0
HanXRQChr15g0488461 Helianthus annuus HOM05D005563 ORTHO05D006667 7.7e-90 335.1 350 52.0
Sed0012109 Sechium edule HOM05D005563 ORTHO05D006667 7.7e-90 335.1 350 53.7
AUR62023340 Chenopodium quinoa HOM05D005563 ORTHO05D006667 1.7e-89 334.0 428 47.2
unitig_32.g10817 Utricularia gibba HOM05D005563 ORTHO05D006667 2.2e-84 317.0 381 47.0
AUR62013814 Chenopodium quinoa HOM05D005563 ORTHO05D006667 2.0e-82 310.5 507 40.8
MELO3C022956.2 Cucumis melo HOM05D005563 ORTHO05D006667 1.7e-81 307.4 365 49.6
Gohir.A05G248000 Gossypium hirsutum HOM05D005563 ORTHO05D006667 1.1e-80 304.7 309 53.7
FAN19G1429 Fragaria x ananassa HOM05D005563 ORTHO05D006667 4.7e-79 299.3 450 43.8
Gohir.D05G248801 Gossypium hirsutum HOM05D005563 ORTHO05D006667 4.7e-79 299.3 309 53.7
BcaB03g14888 Brassica carinata HOM05D005563 ORTHO05D006667 3.5e-74 283.1 360 45.8
Sc19g0006900 Simmondsia chinensis HOM05D005563 ORTHO05D006667 3.8e-73 279.6 324 49.1
Eucgr.C03620 Eucalyptus grandis HOM05D005563 ORTHO05D006667 8.0e-71 271.9 279 54.1
AUR62037990 Chenopodium quinoa HOM05D005563 ORTHO05D006667 2.2e-68 263.8 314 47.1
EL10Ac1g00691 Beta vulgaris HOM05D005563 ORTHO05D006667 4.9e-68 262.7 368 44.6
BolC6t39597H Brassica oleracea HOM05D005563 ORTHO05D006667 1.1e-56 224.9 370 41.1
Cpa.g.sc249.8 Carica papaya HOM05D005563 ORTHO05D006667 2.5e-56 223.8 172 67.4
COL.COLO4_34067 Corchorus olitorius HOM05D005563 ORTHO05D006667 2.8e-55 220.3 233 52.4
Mapoly0019s0003 Marchantia polymorpha HOM05D005563 ORTHO05D006667 2.8e-55 220.3 429 36.4
Pp3c5_5220 Physcomitrium patens HOM05D005563 ORTHO05D006667 1.8e-54 217.6 399 35.1
HPP92_009712 Vanilla planifolia HOM05D005563 ORTHO05D006667 2.0e-53 214.2 276 46.4
CDE04G2046 Ceratophyllum demersum HOM05D005563 ORTHO05D006667 3.4e-53 213.4 271 46.1
SHI17431 Sapria himalayana HOM05D005563 ORTHO05D006667 1.9e-51 207.6 282 44.7
SMO356G0078 Selaginella moellendorffii HOM05D005563 ORTHO05D006667 7.1e-51 205.7 410 33.4
AagrBONN_evm.TU.Sc2ySwM_344.1216 Anthoceros agrestis HOM05D005563 ORTHO05D006667 1.7e-49 201.1 481 32.8
Zm00001eb088860 Zea mays HOM05D005563 ORTHO05D006667 8.4e-44 182.2 272 39.7
TPR.G11340 Trifolium pratense HOM05D005563 ORTHO05D006667 2.5e-40 170.6 106 83.0
Eucgr.C03478 Eucalyptus grandis HOM05D005563 ORTHO05D006667 1.9e-35 154.5 213 46.0
MBI14_g20078_MAGBIO Magnolia biondii HOM05D005563 ORTHO05D006667 4.6e-34 149.8 77 85.7
MBI13_g08747_MAGBIO Magnolia biondii HOM05D005563 ORTHO05D006667 1.7e-33 147.9 77 83.1
MBI08_g10505_MAGBIO Magnolia biondii HOM05D000152 ORTHO05D006667 3.9e-33 146.7 101 68.3
MBI15_g36474_MAGBIO Magnolia biondii HOM05D005563 ORTHO05D006667 7.3e-32 142.5 77 80.5
Eucgr.C03640 Eucalyptus grandis HOM05D005563 ORTHO05D006667 2.8e-31 140.6 80 78.8
MCO11G544 Micromonas commoda HOM05D005563 ORTHO05D006667 8.1e-31 139.0 374 27.3
Actinidia03534 Actinidia chinensis HOM05D005563 ORTHO05D006667 4.6e-26 123.2 251 35.9
CBR_g50242 Chara braunii HOM05D005563 ORTHO05D006667 1.3e-25 121.7 588 24.5
DCAR_001179 Daucus carota HOM05D005563 ORTHO05D006667 1.8e-25 121.3 163 47.9
Thecc.10G189600 Theobroma cacao HOM05D005563 ORTHO05D006667 1.4e-22 111.7 112 55.4
CBR_g8323 Chara braunii HOM05D005563 ORTHO05D006667 4.5e-21 106.7 171 36.8
FAN20G2324 Fragaria x ananassa HOM05D005563 ORTHO05D006667 5.8e-21 106.3 56 82.1
Eucgr.L00998 Eucalyptus grandis HOM05D005563 ORTHO05D006667 9.9e-21 105.5 186 41.4
C06p46160 Brassica napus HOM05D005563 ORTHO05D006667 4.9e-20 103.2 191 37.2
Cre10.g439200 Chlamydomonas reinhardtii HOM05D005563 ORTHO05D006667 5.6e-16 89.7 441 23.8
Eucgr.C03636 Eucalyptus grandis HOM05D005563 ORTHO05D006667 6.9e-14 82.8 162 38.9
PRCOL_00003298 Prasinoderma coloniale HOM05D005563 ORTHO05D006667 4.9e-12 76.6 72 48.6
Thecc.10G189700 Theobroma cacao HOM05D005563 ORTHO05D006667 3.5e-10 70.5 115 38.3
Haze_14787 Corylus avellana HOM05D005563 ORTHO05D006667 1.9e-08 64.7 240 28.3
SHI17433 Sapria himalayana HOM05D005563 ORTHO05D006667 6.9e-06 56.2 54 53.7


User provided reference genes

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