Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g101480 Medicago truncatula HOM05D005081 ORTHO05D005506 2.6e-115 418.7 208 100.0
TPR.G25464 Trifolium pratense HOM05D005081 ORTHO05D005506 9.5e-65 250.8 218 64.2
Ca_17410_v3 Cicer arietinum L. HOM05D005081 ORTHO05D005506 1.1e-57 227.3 229 60.7
Lj4g0023825 Lotus japonicus HOM05D005081 ORTHO05D005506 4.9e-45 185.3 216 52.8
Glyma.08G028300 Glycine max HOM05D005081 ORTHO05D005506 1.3e-42 177.2 212 52.8
Psat7g022000 Pisum sativum HOM05D005081 ORTHO05D005506 2.3e-42 176.4 223 52.9
Glyma.05G221800 Glycine max HOM05D005081 ORTHO05D005506 1.6e-40 170.2 214 50.9
Phvul.002G303500 Phaseolus vulgaris HOM05D005081 ORTHO05D005506 9.2e-36 154.5 214 50.9
VMungo0251G2709 Vigna mungo HOM05D005081 ORTHO05D005506 2.1e-35 153.3 214 50.9
Lalb_Chr05g0223691 Lupinus albus HOM05D005081 ORTHO05D005506 2.5e-33 146.4 232 46.6
QL11p009451 Quercus lobata HOM05D005081 ORTHO05D005506 4.4e-30 135.6 220 41.8
Duzib170G0058 Durio zibethinus HOM05D005081 ORTHO05D005506 1.7e-29 133.7 205 44.9
arahy.Tifrunner.gnm1.ann1.FV9V0P Arachis hypogaea HOM05D005081 ORTHO05D005506 8.4e-29 131.3 245 41.2
arahy.Tifrunner.gnm1.ann1.TAK2NC Arachis hypogaea HOM05D005081 ORTHO05D005506 8.4e-29 131.3 240 41.7
Cpa.g.sc115.44 Carica papaya HOM05D005081 ORTHO05D005506 8.4e-29 131.3 242 43.4
GSVIVG01035163001 Vitis vinifera HOM05D005081 ORTHO05D005506 2.4e-28 129.8 245 39.2
FAN12G4058 Fragaria x ananassa HOM05D005081 ORTHO05D005506 5.4e-28 128.6 221 42.1
Rhsim01G0113200 Rhododendron simsii HOM05D005081 ORTHO05D005506 1.2e-27 127.5 257 38.5
MELO3C017390.2 Cucumis melo HOM05D005081 ORTHO05D005506 2.1e-27 126.7 257 37.7
FvH4_4g06450 Fragaria vesca HOM05D005081 ORTHO05D005506 2.7e-27 126.3 221 41.6
Duzib168G1013 Durio zibethinus HOM05D005081 ORTHO05D005506 3.5e-27 125.9 213 43.2
Actinidia38513 Actinidia chinensis HOM05D005081 ORTHO05D005506 4.6e-27 125.6 221 39.8
Thecc.09G189400 Theobroma cacao HOM05D005081 ORTHO05D005506 6.0e-27 125.2 214 43.5
Manes.15G189400 Manihot esculenta HOM05D005081 ORTHO05D005506 7.8e-27 124.8 232 38.4
Potri.006G070900 Populus trichocarpa HOM05D005081 ORTHO05D005506 7.8e-27 124.8 272 37.9
vmacro20793 Vaccinium macrocarpon HOM05D005081 ORTHO05D005506 7.8e-27 124.8 255 36.5
SGA_v2.0_scaffold63G21842 Striga asiatica HOM05D005081 ORTHO05D005506 1.0e-26 124.4 252 36.5
Actinidia29969 Actinidia chinensis HOM05D005081 ORTHO05D005506 1.3e-26 124.0 246 37.4
CSS0043250 Camellia sinensis var. sinensis HOM05D005081 ORTHO05D005506 1.3e-26 124.0 253 40.7
Carub.0007s3114 Capsella rubella HOM05D005081 ORTHO05D005506 1.3e-26 124.0 224 39.3
FAN17G0390 Fragaria x ananassa HOM05D005081 ORTHO05D005506 1.3e-26 124.0 220 41.4
FAN22G0520 Fragaria x ananassa HOM05D005081 ORTHO05D005506 2.3e-26 123.2 221 41.6
RcHm_v2.0_Chr4g0398241 Rosa chinensis HOM05D005081 ORTHO05D005506 2.3e-26 123.2 227 38.8
Haze_19038 Corylus avellana HOM05D001026 ORTHO05D003027 3.9e-26 122.5 226 41.2
AT5G35320 Arabidopsis thaliana HOM05D005081 ORTHO05D005506 6.6e-26 121.7 224 40.6
Nitab4.5_0010835g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 6.6e-26 121.7 243 38.3
Sabra06G0052800 Salix brachista HOM05D005081 ORTHO05D005506 6.6e-26 121.7 278 37.4
Sed0028150 Sechium edule HOM05D005081 ORTHO05D005506 6.6e-26 121.7 234 37.6
CsaV3_1G032220 Cucumis sativus L. HOM05D005081 ORTHO05D005506 8.7e-26 121.3 258 37.2
CiPaw.15G154600 Carya illinoinensis HOM05D005081 ORTHO05D005506 1.1e-25 120.9 239 38.1
AL7G44130 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 1.5e-25 120.6 222 38.7
Migut.L01903 Erythranthe guttata HOM05D005081 ORTHO05D005506 1.5e-25 120.6 235 38.7
Gohir.D04G006900 Gossypium hirsutum HOM05D005081 ORTHO05D005506 1.5e-25 120.6 210 41.9
Potri.018G132600 Populus trichocarpa HOM05D005081 ORTHO05D005506 1.5e-25 120.6 276 38.0
Gohir.A05G408500 Gossypium hirsutum HOM05D005081 ORTHO05D005506 1.9e-25 120.2 208 42.8
Gorai.012G008600 Gossypium raimondii HOM05D005081 ORTHO05D005506 1.9e-25 120.2 210 41.9
ClCG06G014000 Citrullus lanatus HOM05D005081 ORTHO05D005506 2.5e-25 119.8 254 37.4
Cc00_g16170 Coffea canephora HOM05D005081 ORTHO05D005506 2.5e-25 119.8 243 39.1
FAN07G0684 Fragaria x ananassa HOM05D005081 ORTHO05D005506 2.5e-25 119.8 218 40.4
AUR62021338 Chenopodium quinoa HOM05D005081 ORTHO05D005506 4.3e-25 119.0 245 39.2
THA.LOC104826579 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 5.6e-25 118.6 222 36.5
Nitab4.5_0000833g0060 Nicotiana tabacum HOM05D005081 ORTHO05D005506 7.3e-25 118.2 243 37.9
Nitab4.5_0011475g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 7.3e-25 118.2 235 38.7
Thhalv10003466m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 9.6e-25 117.9 226 39.4
Atru.chr12.2077 Acer truncatum HOM05D005081 ORTHO05D005506 1.2e-24 117.5 251 39.8
Ciclev10012648m.g Citrus clementina HOM05D005081 ORTHO05D005506 2.1e-24 116.7 223 37.7
TWI32G0620 Tripterygium wilfordii HOM05D005081 ORTHO05D005506 2.1e-24 116.7 237 38.8
AUR62033253 Chenopodium quinoa HOM05D005081 ORTHO05D005506 2.4e-23 113.2 248 37.1
Hma1.2p1_0022F.1_g014783 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 4.0e-23 112.5 251 36.3
Peaxi162Scf00889g00221 Petunia axillaris HOM05D005081 ORTHO05D005506 1.5e-22 110.5 236 39.4
PSO170G2950 Papaver somniferum HOM05D005081 ORTHO05D005506 2.6e-22 109.8 245 37.1
Aa31LG4G14880 Aethionema arabicum HOM05D005081 ORTHO05D005506 4.4e-22 109.0 219 38.8
CiPaw.16G103000 Carya illinoinensis HOM05D005081 ORTHO05D005506 5.8e-22 108.6 235 39.1
CARHR217350 Cardamine hirsuta HOM05D005081 ORTHO05D005506 7.6e-22 108.2 225 37.8
THA.LOC104815319 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 7.6e-22 108.2 225 36.0
MD13G1236100 Malus domestica HOM05D005081 ORTHO05D005506 1.3e-21 107.5 208 41.3
Nitab4.5_0000053g0180 Nicotiana tabacum HOM05D005081 ORTHO05D005506 1.3e-21 107.5 232 38.8
Peaxi162Scf00315g00813 Petunia axillaris HOM05D005081 ORTHO05D005506 1.3e-21 107.5 236 36.0
PGSC0003DMG400013692 Solanum tuberosum HOM05D005081 ORTHO05D005506 1.7e-21 107.1 250 35.6
MSTRG.10457 Avicennia marina HOM05D005081 ORTHO05D005506 2.2e-21 106.7 245 38.4
MBI16_g18201_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 3.8e-21 105.9 246 36.2
PSO063G3463 Papaver somniferum HOM05D005081 ORTHO05D005506 3.8e-21 105.9 246 37.0
MSTRG.26528 Avicennia marina HOM05D005081 ORTHO05D005506 6.4e-21 105.1 242 36.4
CANSAT80G2033 Cannabis sativa HOM05D005081 ORTHO05D005506 6.4e-21 105.1 232 39.7
Oeu044689.1 Olea europaea HOM05D005081 ORTHO05D005506 6.4e-21 105.1 248 35.9
BraA03t13610Z Brassica rapa HOM05D005081 ORTHO05D005506 8.4e-21 104.8 214 39.3
Hma1.2p1_0022F.1_g014780 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 8.4e-21 104.8 206 40.3
Lsat_1_v5_gn_7_59220 Lactuca sativa HOM05D005081 ORTHO05D005506 8.4e-21 104.8 240 34.2
PGR044G2548 Punica granatum HOM05D005081 ORTHO05D005506 8.4e-21 104.8 241 37.8
A03p44750 Brassica napus HOM05D005081 ORTHO05D005506 1.1e-20 104.4 214 39.3
HanXRQChr03g0067191 Helianthus annuus HOM05D005081 ORTHO05D005506 1.4e-20 104.0 230 34.8
Oeu008926.1 Olea europaea HOM05D005081 ORTHO05D005506 1.9e-20 103.6 241 34.4
Sopen00g006190 Solanum pennellii HOM05D005081 ORTHO05D005506 1.9e-20 103.6 247 34.8
Sp3g25120 Schrenkiella parvula HOM05D005081 ORTHO05D005506 2.4e-20 103.2 223 35.4
TAR625G0352 Trochodendron aralioides HOM05D005081 ORTHO05D005506 3.2e-20 102.8 251 35.1
ECA240G1118 Erigeron canadensis HOM05D005081 ORTHO05D005506 5.4e-20 102.1 241 36.1
Eucgr.C02188 Eucalyptus grandis HOM05D005081 ORTHO05D005506 7.1e-20 101.7 264 33.0
TAR383G1035 Trochodendron aralioides HOM05D005081 ORTHO05D005506 7.1e-20 101.7 250 34.8
Solyc05g046310.3 Solanum lycopersicum HOM05D005081 ORTHO05D005506 9.3e-20 101.3 244 35.7
THA.LOC104808906 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 1.2e-19 100.9 228 33.8
Ah.14g083630 Amaranthus hybridus HOM05D005081 ORTHO05D005506 1.6e-19 100.5 235 36.6
SalBow6G6882 Salvia bowleyana HOM05D005081 ORTHO05D005506 1.6e-19 100.5 233 39.1
Sed0020945 Sechium edule HOM05D005081 ORTHO05D005506 2.1e-19 100.1 240 34.2
Hund26317 Selenicereus undatus HOM05D005081 ORTHO05D005506 4.6e-19 99.0 251 33.9
AL3G43930 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 7.8e-19 98.2 203 38.4
Carub.0003s2733 Capsella rubella HOM05D005081 ORTHO05D005506 7.8e-19 98.2 209 37.8
Dinv02618 Davidia involucrata HOM05D005081 ORTHO05D005506 7.8e-19 98.2 198 34.3
Sc08g0004640 Simmondsia chinensis HOM05D005081 ORTHO05D005506 7.8e-19 98.2 248 35.9
HanXRQChr10g0303491 Helianthus annuus HOM05D005081 ORTHO05D005506 1.3e-18 97.4 231 34.6
Aqoxy7G02679 Aquilegia oxysepala HOM05D005081 ORTHO05D005506 6.6e-18 95.1 245 35.1
EL10Ac8g18324 Beta vulgaris HOM05D005081 ORTHO05D005506 3.3e-17 92.8 244 33.6
Ah.09g230120 Amaranthus hybridus HOM05D005081 ORTHO05D005506 4.3e-17 92.4 251 33.1
Sabra18G0112300 Salix brachista HOM05D005081 ORTHO05D005506 4.3e-17 92.4 250 37.2
ECA234G2314 Erigeron canadensis HOM05D005081 ORTHO05D005506 9.6e-17 91.3 225 34.7
CARHR103910 Cardamine hirsuta HOM05D005081 ORTHO05D005506 2.1e-16 90.1 198 33.8
unitig_899.g15188 Utricularia gibba HOM05D005081 ORTHO05D005506 2.1e-16 90.1 230 34.3
BcaB08g34509 Brassica carinata HOM05D005081 ORTHO05D005506 2.8e-16 89.7 214 34.6
Prupe.1G067800 Prunus persica HOM05D005081 ORTHO05D005506 1.8e-15 87.0 215 37.2
Cc10_g11560 Coffea canephora HOM05D005081 ORTHO05D005506 4.0e-15 85.9 215 36.3
DCAR_019825 Daucus carota HOM05D005081 ORTHO05D005506 4.0e-15 85.9 235 36.2
CDE02G3184 Ceratophyllum demersum HOM05D005081 ORTHO05D005506 6.9e-15 85.1 201 36.8
BcaC01g03146 Brassica carinata HOM05D005081 ORTHO05D005506 3.4e-14 82.8 212 33.5
C03p55600 Brassica napus HOM05D005081 ORTHO05D005506 3.4e-14 82.8 212 33.5
BolC3t17837H Brassica oleracea HOM05D005081 ORTHO05D005506 3.4e-14 82.8 212 33.5
Hund09052 Selenicereus undatus HOM05D005081 ORTHO05D005506 5.8e-14 82.0 225 31.1
Actinidia31880 Actinidia chinensis HOM05D005081 ORTHO05D005506 6.4e-13 78.6 180 38.3
Zm00001eb208100 Zea mays HOM05D005081 ORTHO05D005506 1.4e-12 77.4 230 32.6
Lalb_Chr11g0064261 Lupinus albus HOM05D005081 ORTHO05D005506 1.9e-12 77.0 193 33.7
Os02g0141500 Oryza sativa ssp. japonica HOM05D005081 ORTHO05D005506 1.0e-10 71.2 229 32.3
ATR0626G171 Amborella trichopoda HOM05D005081 ORTHO05D005506 3.9e-10 69.3 250 33.2
MBI13_g31561_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 1.5e-09 67.4 240 31.7
MD16G1241100 Malus domestica HOM05D005081 ORTHO05D005506 9.6e-09 64.7 104 43.3
Prupe.1G455900 Prunus persica HOM05D005081 ORTHO05D005506 1.3e-08 64.3 227 29.5
Peaxi162Scf00566g00025 Petunia axillaris HOM05D005081 ORTHO05D005506 2.1e-08 63.5 133 36.8
HPP92_017096 Vanilla planifolia HOM05D005081 ORTHO05D005506 2.1e-08 63.5 211 28.9
HPP92_017106 Vanilla planifolia HOM05D005081 ORTHO05D005506 2.1e-08 63.5 211 28.9
Peaxi162Scf00083g00112 Petunia axillaris HOM05D005081 ORTHO05D005506 8.1e-08 61.6 110 39.1
Peaxi162Scf00460g00005 Petunia axillaris HOM05D005081 ORTHO05D005506 8.1e-08 61.6 128 36.7
Peaxi162Scf00740g00003 Petunia axillaris HOM05D005081 ORTHO05D005506 1.4e-07 60.8 111 38.7
Peaxi162Scf01260g00001 Petunia axillaris HOM05D005081 ORTHO05D005506 1.4e-07 60.8 112 38.4
RcHm_v2.0_Chr6g0305451 Rosa chinensis HOM05D005081 ORTHO05D005506 1.4e-07 60.8 175 30.9
FAN27G3206 Fragaria x ananassa HOM05D026897 ORTHO05D005506 2.0e-06 57.0 177 28.8
FvH4_2g36450 Fragaria vesca HOM05D026897 ORTHO05D005506 2.6e-06 56.6 177 28.8
FAN20G0355 Fragaria x ananassa HOM05D026897 ORTHO05D005506 2.6e-06 56.6 177 28.2
Peaxi162Scf00228g00099 Petunia axillaris HOM05D005081 ORTHO05D005506 4.5e-06 55.8 127 34.6
Peaxi162Scf00020g00002 Petunia axillaris HOM05D005081 ORTHO05D005506 7.6e-06 55.1 93 37.6


User provided reference genes

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