Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g099835 Medicago truncatula HOM05D006253 ORTHO05D007666 1.6e-77 292.7 153 100.0
TPR.G19178 Trifolium pratense HOM05D006253 ORTHO05D007666 3.0e-68 261.9 149 91.3
TPR.G19494 Trifolium pratense HOM05D006253 ORTHO05D007666 3.9e-68 261.5 148 92.6
Lj6g0019810 Lotus japonicus HOM05D006253 ORTHO05D007666 5.7e-67 257.7 149 90.6
Ca_15796_v3 Cicer arietinum L. HOM05D006253 ORTHO05D007666 9.7e-67 256.9 149 91.3
Ca_30406_v3 Cicer arietinum L. HOM05D006253 ORTHO05D007666 9.7e-67 256.9 149 91.3
arahy.Tifrunner.gnm1.ann1.1E2X9I Arachis hypogaea HOM05D006253 ORTHO05D007666 2.8e-66 255.4 149 87.9
Psat5g098280 Pisum sativum HOM05D006253 ORTHO05D007666 3.7e-66 255.0 144 91.7
arahy.Tifrunner.gnm1.ann1.ETD7FQ Arachis hypogaea HOM05D006253 ORTHO05D007666 8.2e-66 253.8 149 87.2
Ca_01013_v3 Cicer arietinum L. HOM05D006253 ORTHO05D007666 2.4e-65 252.3 149 88.6
Potri.004G141400 Populus trichocarpa HOM05D006253 ORTHO05D007666 3.1e-65 251.9 149 85.2
VMungo1080G0444 Vigna mungo HOM05D006253 ORTHO05D007666 3.1e-65 251.9 149 87.9
Lalb_Chr25g0286231 Lupinus albus HOM05D006253 ORTHO05D007666 7.0e-65 250.8 149 87.2
Phvul.005G182700 Phaseolus vulgaris HOM05D006253 ORTHO05D007666 7.0e-65 250.8 149 87.2
Glyma.04G194000 Glycine max HOM05D006253 ORTHO05D007666 9.1e-65 250.4 149 89.3
QL11p035967 Quercus lobata HOM05D006253 ORTHO05D007666 2.0e-64 249.2 148 87.2
arahy.Tifrunner.gnm1.ann1.5N1458 Arachis hypogaea HOM05D006253 ORTHO05D007666 5.9e-64 247.7 149 85.9
Sabra04G0093200 Salix brachista HOM05D006253 ORTHO05D007666 5.9e-64 247.7 149 84.6
Gohir.A01G006900 Gossypium hirsutum HOM05D006253 ORTHO05D007666 1.0e-63 246.9 149 83.2
TAR376G0695 Trochodendron aralioides HOM05D006253 ORTHO05D007666 1.3e-63 246.5 149 84.6
Gorai.002G008000 Gossypium raimondii HOM05D006253 ORTHO05D007666 1.7e-63 246.1 149 83.2
Manes.01G064000 Manihot esculenta HOM05D006253 ORTHO05D007666 5.0e-63 244.6 149 83.2
RcHm_v2.0_Chr6g0257111 Rosa chinensis HOM05D006253 ORTHO05D007666 6.5e-63 244.2 151 85.4
CiPaw.05G006400 Carya illinoinensis HOM05D006253 ORTHO05D007666 8.5e-63 243.8 149 83.9
Thecc.02G100600 Theobroma cacao HOM05D006253 ORTHO05D007666 1.5e-62 243.0 149 81.2
Nn5g30328 Nelumbo nucifera HOM05D006253 ORTHO05D007666 2.5e-62 242.3 149 83.9
Sc14g0002650 Simmondsia chinensis HOM05D006253 ORTHO05D007666 2.5e-62 242.3 149 83.9
Gohir.D01G007000 Gossypium hirsutum HOM05D006253 ORTHO05D007666 4.2e-62 241.5 149 81.9
Actinidia12952 Actinidia chinensis HOM05D006253 ORTHO05D007666 7.2e-62 240.7 149 84.6
Hma1.2p1_0370F.1_g137800 Hydrangea macrophylla HOM05D006253 ORTHO05D007666 7.2e-62 240.7 149 83.9
Ciclev10029390m.g Citrus clementina HOM05D006253 ORTHO05D007666 9.4e-62 240.4 149 81.2
FvH4_2g06110 Fragaria vesca HOM05D006253 ORTHO05D007666 9.4e-62 240.4 151 82.8
FAN24G2487 Fragaria x ananassa HOM05D006253 ORTHO05D007666 9.4e-62 240.4 151 82.8
Duzib052G0633 Durio zibethinus HOM05D006253 ORTHO05D007666 1.2e-61 240.0 144 83.3
Prupe.8G124200 Prunus persica HOM05D006253 ORTHO05D007666 1.2e-61 240.0 151 82.1
arahy.Tifrunner.gnm1.ann1.AJN977 Arachis hypogaea HOM05D006253 ORTHO05D007666 1.6e-61 239.6 149 83.2
COL.COLO4_32658 Corchorus olitorius HOM05D006253 ORTHO05D007666 2.1e-61 239.2 149 80.5
HanXRQChr16g0501301 Helianthus annuus HOM05D006253 ORTHO05D007666 2.1e-61 239.2 149 83.2
FAN27G3246 Fragaria x ananassa HOM05D006253 ORTHO05D007666 3.6e-61 238.4 157 80.9
Lj5C209T13 Lonicera japonica HOM05D006253 ORTHO05D007666 4.7e-61 238.0 149 81.9
Rhsim03G0192100 Rhododendron simsii HOM05D006253 ORTHO05D007666 8.0e-61 237.3 149 83.9
ECA234G4670 Erigeron canadensis HOM05D006253 ORTHO05D007666 1.4e-60 236.5 149 81.2
Eucgr.I01155 Eucalyptus grandis HOM05D006253 ORTHO05D007666 2.3e-60 235.7 149 81.9
MD05G1080500 Malus domestica HOM05D006253 ORTHO05D007666 3.0e-60 235.3 150 81.3
HanXRQChr10g0319791 Helianthus annuus HOM05D006253 ORTHO05D007666 4.0e-60 235.0 151 82.1
Lsat_1_v5_gn_5_112681 Lactuca sativa HOM05D006253 ORTHO05D007666 5.2e-60 234.6 149 81.2
GSVIVG01031749001 Vitis vinifera HOM05D006253 ORTHO05D007666 6.7e-60 234.2 149 79.9
CANSAT25G0326 Cannabis sativa HOM05D006253 ORTHO05D007666 2.6e-59 232.3 149 79.9
MELO3C019508.2 Cucumis melo HOM05D006253 ORTHO05D007666 4.4e-59 231.5 149 80.5
Os01g0142200 Oryza sativa ssp. japonica HOM05D006253 ORTHO05D007666 4.4e-59 231.5 150 78.0
Sed0027718 Sechium edule HOM05D006253 ORTHO05D007666 5.7e-59 231.1 149 79.9
PGR142G1116 Punica granatum HOM05D006253 ORTHO05D007666 7.5e-59 230.7 149 79.2
Oeu010588.1 Olea europaea HOM05D006253 ORTHO05D007666 1.3e-58 229.9 149 79.9
CANSAT35G0887 Cannabis sativa HOM05D006253 ORTHO05D007666 2.2e-58 229.2 149 79.2
CAN.G1041.15 Capsicum annuum HOM05D006253 ORTHO05D007666 2.2e-58 229.2 149 81.2
Rhsim05G0084000 Rhododendron simsii HOM05D006253 ORTHO05D007666 2.2e-58 229.2 158 78.5
TWI79G0152 Tripterygium wilfordii HOM05D006253 ORTHO05D007666 2.2e-58 229.2 149 79.9
MBI02_g02992_MAGBIO Magnolia biondii HOM05D006253 ORTHO05D007666 3.7e-58 228.4 144 80.6
PGSC0003DMG400025894 Solanum tuberosum HOM05D006253 ORTHO05D007666 3.7e-58 228.4 149 80.5
CsaV3_3G018580 Cucumis sativus L. HOM05D006253 ORTHO05D007666 4.8e-58 228.0 149 79.2
THA.LOC104807358 Tarenaya hassleriana HOM05D006253 ORTHO05D007666 4.8e-58 228.0 149 78.5
PSO478G4849 Papaver somniferum HOM05D006253 ORTHO05D007666 6.3e-58 227.6 144 81.9
Sopen01g050480 Solanum pennellii HOM05D006253 ORTHO05D007666 8.2e-58 227.3 149 79.9
SGA_v2.0_scaffold22G09667 Striga asiatica HOM05D006253 ORTHO05D007666 3.1e-57 225.3 149 77.9
Solyc01g108260.4 Solanum lycopersicum HOM05D006253 ORTHO05D007666 4.1e-57 224.9 153 77.1
PSO782G1871 Papaver somniferum HOM05D006253 ORTHO05D007666 2.0e-56 222.6 144 80.6
EL10Ac5g11497 Beta vulgaris HOM05D006253 ORTHO05D007666 2.7e-56 222.2 149 75.8
MSTRG.27724 Avicennia marina HOM05D006253 ORTHO05D007666 7.7e-56 220.7 149 77.2
CARHR242350 Cardamine hirsuta HOM05D006253 ORTHO05D007666 5.0e-55 218.0 149 76.5
AT4G34412 Arabidopsis thaliana HOM05D006253 ORTHO05D007666 1.5e-54 216.5 149 76.5
Zm00001eb124670 Zea mays HOM05D006253 ORTHO05D007666 2.5e-54 215.7 149 74.5
HPP92_001047 Vanilla planifolia HOM05D006253 ORTHO05D007666 3.2e-54 215.3 149 75.8
AL7G16840 Arabidopsis lyrata HOM05D006253 ORTHO05D007666 5.5e-54 214.5 149 76.5
DCAR_007862 Daucus carota HOM05D006253 ORTHO05D007666 5.5e-54 214.5 144 77.8
A01p04020 Brassica napus HOM05D006253 ORTHO05D007666 7.2e-54 214.2 149 75.8
Sp7g32200 Schrenkiella parvula HOM05D006253 ORTHO05D007666 1.2e-53 213.4 149 75.8
BcaNung06978 Brassica carinata HOM05D006253 ORTHO05D007666 2.1e-53 212.6 149 75.2
Thhalv10026394m.g Eutrema salsugineum HOM05D006253 ORTHO05D007666 2.1e-53 212.6 149 75.2
Carub.0007s0590 Capsella rubella HOM05D006253 ORTHO05D007666 2.7e-53 212.2 149 74.5
BraA03t15367Z Brassica rapa HOM05D006253 ORTHO05D007666 6.1e-53 211.1 149 75.2
C07p60590 Brassica napus HOM05D006253 ORTHO05D007666 2.3e-52 209.1 149 74.5
BolC7t46489H Brassica oleracea HOM05D003825 ORTHO05D004491 2.3e-52 209.1 149 74.5
Glyma.06G172100 Glycine max HOM05D006253 ORTHO05D007666 3.0e-52 208.8 121 89.3
Aa31LG2G16330 Aethionema arabicum HOM05D006253 ORTHO05D007666 2.6e-51 205.7 149 73.8
AagrBONN_evm.TU.Sc2ySwM_344.4457 Anthoceros agrestis HOM05D006253 ORTHO05D007666 8.3e-50 200.7 149 67.1
Mapoly0083s0082 Marchantia polymorpha HOM05D006253 ORTHO05D007666 1.2e-48 196.8 149 64.4
Atru.chr5.2705 Acer truncatum HOM05D006253 ORTHO05D007666 2.7e-48 195.7 149 72.5
Sed0021593 Sechium edule HOM05D006253 ORTHO05D007666 7.7e-48 194.1 131 75.6
SMO351G0094 Selaginella moellendorffii HOM05D006253 ORTHO05D007666 7.7e-48 194.1 149 65.8
FAN20G2826 Fragaria x ananassa HOM05D006253 ORTHO05D007666 1.3e-47 193.4 149 70.5
CSS0003209 Camellia sinensis var. sinensis HOM05D006253 ORTHO05D007666 2.5e-46 189.1 119 81.5
Pp3c22_3990 Physcomitrium patens HOM05D006253 ORTHO05D007666 5.5e-46 188.0 149 62.4
CDE08G0295 Ceratophyllum demersum HOM05D006253 ORTHO05D007666 8.8e-44 180.6 120 75.8
Phvul.002G266500 Phaseolus vulgaris HOM05D006253 ORTHO05D007666 3.4e-43 178.7 111 83.8
Hund00335 Selenicereus undatus HOM05D006253 ORTHO05D007666 2.8e-42 175.6 149 67.1
AUR62029937 Chenopodium quinoa HOM05D006253 ORTHO05D007666 3.7e-42 175.3 127 73.2
AUR62033746 Chenopodium quinoa HOM05D006253 ORTHO05D007666 9.2e-41 170.6 144 66.0
Medtr2g105210 Medicago truncatula HOM05D006253 ORTHO05D007666 2.0e-40 169.5 123 75.6
FAN15G3440 Fragaria x ananassa HOM05D006253 ORTHO05D007666 2.5e-38 162.5 149 62.4
CBR_g38557 Chara braunii HOM05D006253 ORTHO05D007666 1.6e-37 159.8 149 56.4
CSS0033941 Camellia sinensis var. sinensis HOM05D006253 ORTHO05D007666 1.4e-36 156.8 139 68.3
MD10G1094500 Malus domestica HOM05D006253 ORTHO05D007666 3.0e-36 155.6 126 65.9
SEGI_00233 Sequoiadendron giganteum HOM05D006253 ORTHO05D007666 8.3e-34 147.5 95 77.9
C01p04340 Brassica napus HOM05D006253 ORTHO05D007666 1.3e-31 140.2 99 73.7
BolC1t00422H Brassica oleracea HOM05D006253 ORTHO05D007666 8.6e-31 137.5 92 79.3
Cc02_g18770 Coffea canephora HOM05D006253 ORTHO05D007666 1.6e-29 133.3 89 76.4
vmacro19500 Vaccinium macrocarpon HOM05D006253 ORTHO05D007666 1.8e-28 129.8 164 54.3
Prupe.4G258000 Prunus persica HOM05D006253 ORTHO05D007666 1.7e-26 123.2 99 64.6
SalBow3G2580 Salvia bowleyana HOM05D006253 ORTHO05D007666 3.7e-26 122.1 120 59.2
Prupe.6G016400 Prunus persica HOM05D006253 ORTHO05D007666 8.3e-26 120.9 128 53.9
vmacro06019 Vaccinium macrocarpon HOM05D006253 ORTHO05D007666 2.4e-25 119.4 95 70.5
Ah.10g034240 Amaranthus hybridus HOM05D006253 ORTHO05D007666 2.0e-24 116.3 86 70.9
MCO10G211 Micromonas commoda HOM05D006253 ORTHO05D007666 2.0e-24 116.3 137 45.3
PRCOL_00001305 Prasinoderma coloniale HOM05D006253 ORTHO05D007666 8.6e-23 110.9 156 41.7
Sabra09G0078100 Salix brachista HOM05D006253 ORTHO05D007666 1.1e-22 110.5 86 72.1
Cre01.g030950 Chlamydomonas reinhardtii HOM05D006253 ORTHO05D007666 1.5e-22 110.2 149 38.9
Hma1.2p1_0804F.1_g221060 Hydrangea macrophylla HOM05D006253 ORTHO05D007666 1.5e-19 100.1 71 73.2
A03p62890 Brassica napus HOM05D000211 ORTHO05D007666 1.7e-18 96.7 71 71.8
Gorai.005G238200 Gossypium raimondii HOM05D006253 ORTHO05D007666 1.7e-15 86.7 81 59.3
Hma1.2p1_0674F.1_g201500 Hydrangea macrophylla HOM05D006253 ORTHO05D007666 5.1e-15 85.1 58 77.6
Oeu025576.2 Olea europaea HOM05D006253 ORTHO05D007666 3.6e-13 79.0 63 66.7
Prupe.4G259300 Prunus persica HOM05D006253 ORTHO05D007666 3.6e-13 79.0 86 51.2
Prupe.2G172700 Prunus persica HOM05D006253 ORTHO05D007666 6.2e-13 78.2 51 76.5
Migut.N01188 Erythranthe guttata HOM05D006253 ORTHO05D007666 1.8e-12 76.6 55 74.5
Aqoxy5G01240 Aquilegia oxysepala HOM05D006253 ORTHO05D007666 1.5e-11 73.6 57 63.2
Gohir.D02G210201 Gossypium hirsutum HOM05D006253 ORTHO05D007666 7.6e-11 71.2 74 55.4
SEGI_00525 Sequoiadendron giganteum HOM05D006253 ORTHO05D007666 8.4e-10 67.8 58 60.3
ClCG05G009990 Citrullus lanatus HOM05D006253 ORTHO05D007666 2.7e-08 62.8 92 43.5


User provided reference genes

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