Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g099725 Medicago truncatula HOM05D005777 ORTHO05D006854 0.0e+00 1166.8 629 100.0
Psat7g024000 Pisum sativum HOM05D005777 ORTHO05D006854 4.4e-214 748.4 511 81.6
Lj4g0026879 Lotus japonicus HOM05D005777 ORTHO05D006854 4.4e-166 589.0 544 59.4
Glyma.08G025000 Glycine max HOM05D005777 ORTHO05D006854 1.2e-163 580.9 534 59.7
Glyma.05G218900 Glycine max HOM05D005777 ORTHO05D006854 1.9e-161 573.5 530 59.1
TPR.G3378 Trifolium pratense HOM05D005777 ORTHO05D006854 1.3e-157 560.8 442 69.9
Ca_17460_v3 Cicer arietinum L. HOM05D005777 ORTHO05D006854 5.1e-146 522.3 544 62.3
Phvul.002G300700 Phaseolus vulgaris HOM05D005777 ORTHO05D006854 7.6e-142 508.4 546 52.0
Lalb_Chr05g0223951 Lupinus albus HOM05D005777 ORTHO05D006854 2.5e-129 466.8 417 61.4
VMungo0251G0419 Vigna mungo HOM05D003100 ORTHO05D003533 1.5e-113 414.5 602 43.7
TWI60G0567 Tripterygium wilfordii HOM05D005777 ORTHO05D006854 1.7e-104 384.4 459 47.1
Atru.chr9.1942 Acer truncatum HOM05D005777 ORTHO05D006854 7.0e-95 352.4 561 39.9
RcHm_v2.0_Chr7g0186161 Rosa chinensis HOM05D005777 ORTHO05D006854 2.9e-93 347.1 382 51.8
Prupe.5G124500 Prunus persica HOM05D005777 ORTHO05D006854 1.5e-92 344.7 370 52.7
FvH4_5g11630 Fragaria vesca HOM05D005777 ORTHO05D006854 2.8e-88 330.5 384 49.2
FAN04G0792 Fragaria x ananassa HOM05D005777 ORTHO05D006854 1.1e-87 328.6 351 51.9
FAN13G2465 Fragaria x ananassa HOM05D005777 ORTHO05D006854 5.4e-87 326.2 384 48.7
Cfa011969 Carpinus fangiana HOM05D005777 ORTHO05D006854 9.1e-87 325.5 383 49.3
PGR042G2859 Punica granatum HOM05D005777 ORTHO05D006854 1.9e-84 317.8 425 44.9
QL02p029612 Quercus lobata HOM05D005777 ORTHO05D006854 4.2e-84 316.6 381 47.5
CANSAT21G0853 Cannabis sativa HOM05D005777 ORTHO05D006854 4.7e-83 313.2 439 42.4
Nitab4.5_0002367g0090 Nicotiana tabacum HOM05D005777 ORTHO05D006854 4.0e-82 310.1 389 48.6
MD06G1111700 Malus domestica HOM05D005777 ORTHO05D006854 2.0e-81 307.8 420 43.6
vmacro13879 Vaccinium macrocarpon HOM05D005777 ORTHO05D006854 1.3e-80 305.1 438 44.3
Nitab4.5_0002793g0030 Nicotiana tabacum HOM05D005777 ORTHO05D006854 4.9e-80 303.1 386 46.6
Haze_09107 Corylus avellana HOM05D005777 ORTHO05D006854 6.3e-80 302.8 385 47.3
Lj8C204T6 Lonicera japonica HOM05D005777 ORTHO05D006854 1.4e-79 301.6 383 45.4
Cpa.g.sc79.3 Carica papaya HOM05D005777 ORTHO05D006854 2.9e-77 293.9 430 42.8
Eucgr.E00747 Eucalyptus grandis HOM05D005777 ORTHO05D006854 8.6e-77 292.4 387 45.2
Rhsim07G0080700 Rhododendron simsii HOM05D005777 ORTHO05D006854 8.6e-77 292.4 440 41.4
CSS0003604 Camellia sinensis var. sinensis HOM05D005777 ORTHO05D006854 1.0e-74 285.4 368 44.8
CsaV3_5G001940 Cucumis sativus L. HOM05D005777 ORTHO05D006854 1.8e-74 284.6 345 46.7
Sabra07G0049700 Salix brachista HOM05D005777 ORTHO05D006854 1.2e-73 282.0 444 41.9
Eucgr.E00744 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.5e-73 281.6 474 37.8
Thecc.08G166000 Theobroma cacao HOM05D005777 ORTHO05D006854 5.8e-73 279.6 381 44.9
Peaxi162Scf00074g00526 Petunia axillaris HOM05D005777 ORTHO05D006854 7.5e-73 279.3 359 46.8
Potri.007G058050 Populus trichocarpa HOM05D005777 ORTHO05D006854 9.8e-73 278.9 368 46.2
MELO3C033830.2 Cucumis melo HOM05D005777 ORTHO05D006854 1.3e-72 278.5 340 45.6
Eucgr.E00956 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.2e-72 277.7 387 41.9
Lsat_1_v5_gn_6_83361 Lactuca sativa HOM05D005777 ORTHO05D006854 8.3e-72 275.8 381 42.5
ECA240G0322 Erigeron canadensis HOM05D005777 ORTHO05D006854 5.4e-71 273.1 439 41.0
PGSC0003DMG400012134 Solanum tuberosum HOM05D005777 ORTHO05D006854 2.7e-70 270.8 367 45.0
Sed0007946 Sechium edule HOM05D005777 ORTHO05D006854 3.5e-70 270.4 398 42.0
Sopen08g030950 Solanum pennellii HOM05D005777 ORTHO05D006854 6.0e-70 269.6 350 46.3
Solyc08g082720.4 Solanum lycopersicum HOM05D005777 ORTHO05D006854 1.0e-69 268.9 380 43.9
CAN.G567.32 Capsicum annuum HOM05D005777 ORTHO05D006854 3.9e-69 266.9 367 44.1
HanXRQChr03g0083721 Helianthus annuus HOM05D005777 ORTHO05D006854 3.3e-68 263.8 356 43.8
TAR629G1222 Trochodendron aralioides HOM05D005777 ORTHO05D006854 7.3e-68 262.7 513 41.7
MBI07_g24771_MAGBIO Magnolia biondii HOM05D005777 ORTHO05D006854 2.5e-60 237.7 412 38.8
CiPaw.11G117200 Carya illinoinensis HOM05D005777 ORTHO05D006854 4.3e-60 236.9 248 53.6
Nn1g00296 Nelumbo nucifera HOM05D005777 ORTHO05D006854 7.3e-60 236.1 360 41.4
Manes.01G049500 Manihot esculenta HOM05D005777 ORTHO05D006854 1.1e-58 232.3 272 50.0
Aqoxy5G04312 Aquilegia oxysepala HOM05D005777 ORTHO05D006854 2.3e-58 231.1 405 39.5
FAN18G2480 Fragaria x ananassa HOM05D005777 ORTHO05D006854 8.9e-58 229.2 334 40.7
Oeu055021.1 Olea europaea HOM05D005777 ORTHO05D006854 1.7e-56 224.9 251 49.8
Migut.E01651 Erythranthe guttata HOM05D005777 ORTHO05D006854 2.9e-56 224.2 261 49.0
Migut.E00735 Erythranthe guttata HOM05D005777 ORTHO05D006854 8.3e-56 222.6 343 41.1
Cc08_g16390 Coffea canephora HOM05D005777 ORTHO05D006854 2.3e-53 214.5 248 50.4
DCAR_006511 Daucus carota HOM05D005777 ORTHO05D006854 3.1e-50 204.1 415 35.9
PSO170G4328 Papaver somniferum HOM05D005777 ORTHO05D006854 2.0e-49 201.4 457 31.3
Eucgr.E00752 Eucalyptus grandis HOM05D005777 ORTHO05D006854 4.4e-49 200.3 494 31.0
EL10Ac5g12951 Beta vulgaris HOM05D005777 ORTHO05D006854 5.8e-49 199.9 267 43.8
Sc01g0010430 Simmondsia chinensis HOM05D005777 ORTHO05D006854 2.9e-48 197.6 240 50.0
Ah.12g052840 Amaranthus hybridus HOM05D005777 ORTHO05D006854 1.9e-47 194.9 272 45.6
Hund14203 Selenicereus undatus HOM05D005777 ORTHO05D006854 9.2e-47 192.6 266 44.0
Actinidia22740 Actinidia chinensis HOM05D005777 ORTHO05D006854 1.2e-46 192.2 311 39.5
Gorai.005G117300 Gossypium raimondii HOM05D005777 ORTHO05D006854 1.5e-44 185.3 263 44.9
Gohir.A02G088000 Gossypium hirsutum HOM05D005777 ORTHO05D006854 6.2e-43 179.9 263 44.1
FAN08G0729 Fragaria x ananassa HOM05D005777 ORTHO05D006854 1.4e-42 178.7 304 37.2
Eucgr.E00762 Eucalyptus grandis HOM05D005777 ORTHO05D006854 7.6e-41 172.9 295 36.3
Eucgr.E00939 Eucalyptus grandis HOM05D005777 ORTHO05D006854 4.6e-38 163.7 199 48.7
COL.COLO4_25066 Corchorus olitorius HOM05D000316 ORTHO05D006854 3.9e-37 160.6 244 41.0
Duzib116G0305 Durio zibethinus HOM05D005777 ORTHO05D006854 1.1e-36 159.1 232 42.2
Ciclev10023874m.g Citrus clementina HOM05D005777 ORTHO05D006854 1.9e-36 158.3 152 55.3
FAN18G2579 Fragaria x ananassa HOM05D005777 ORTHO05D006854 2.5e-36 157.9 274 36.1
HPP92_024143 Vanilla planifolia HOM05D005777 ORTHO05D006854 2.4e-34 151.4 232 41.4
AUR62019875 Chenopodium quinoa HOM05D005777 ORTHO05D006854 9.0e-34 149.4 197 46.2
Lsat_1_v5_gn_5_82800 Lactuca sativa HOM05D005777 ORTHO05D006854 1.9e-31 141.7 277 35.4
Dinv37498 Davidia involucrata HOM05D005777 ORTHO05D006854 1.2e-30 139.0 171 47.4
ATR0602G092 Amborella trichopoda HOM05D005777 ORTHO05D006854 2.7e-30 137.9 248 38.7
Ciclev10023944m.g Citrus clementina HOM05D005777 ORTHO05D006854 2.7e-30 137.9 187 43.9
SGA_v2.0_scaffold74G24601 Striga asiatica HOM05D005777 ORTHO05D006854 1.1e-28 132.5 245 36.3
GSVIVG01019597001 Vitis vinifera HOM05D005777 ORTHO05D006854 2.5e-28 131.3 117 58.1
Lsat_1_v5_gn_9_112141 Lactuca sativa HOM05D005777 ORTHO05D006854 6.2e-27 126.7 123 55.3
Thhalv10028849m.g Eutrema salsugineum HOM05D005777 ORTHO05D006854 3.4e-25 120.9 158 45.6
THA.LOC104813047 Tarenaya hassleriana HOM05D005777 ORTHO05D006854 7.6e-25 119.8 161 47.2
Eucgr.E00969 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.2e-24 118.2 170 45.3
Sp6g06640 Schrenkiella parvula HOM05D005777 ORTHO05D006854 2.2e-24 118.2 158 45.6
Eucgr.E00749 Eucalyptus grandis HOM05D005777 ORTHO05D006854 6.4e-24 116.7 166 45.2
Eucgr.E00900 Eucalyptus grandis HOM05D005777 ORTHO05D006854 8.4e-24 116.3 162 43.8
Eucgr.E01013 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.4e-23 115.5 170 44.7
CDE03G0022 Ceratophyllum demersum HOM05D002476 ORTHO05D002652 2.1e-22 111.7 228 35.1
CARHR255730 Cardamine hirsuta HOM05D005777 ORTHO05D006854 2.7e-22 111.3 158 43.7
FAN04G0565 Fragaria x ananassa HOM05D005777 ORTHO05D006854 3.5e-22 110.9 97 57.7
Os09g0363400 Oryza sativa ssp. japonica HOM05D005777 ORTHO05D006854 3.5e-22 110.9 218 33.0
Carub.0006s2962 Capsella rubella HOM05D005777 ORTHO05D006854 3.0e-21 107.8 194 36.1
Eucgr.E00726 Eucalyptus grandis HOM05D005777 ORTHO05D006854 3.0e-21 107.8 137 46.0
Eucgr.E00894 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.5e-20 105.5 85 58.8
Eucgr.E00912 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.5e-20 105.5 95 52.6
AL6G44960 Arabidopsis lyrata HOM05D005777 ORTHO05D006854 5.6e-20 103.6 194 38.1
AUR62007011 Chenopodium quinoa HOM05D005777 ORTHO05D006854 9.6e-20 102.8 261 33.3
Eucgr.E00696 Eucalyptus grandis HOM05D005777 ORTHO05D006854 9.6e-20 102.8 95 51.6
Eucgr.E00895 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.8e-19 101.3 103 48.5
AT4G10890 Arabidopsis thaliana HOM05D005777 ORTHO05D006854 1.8e-18 98.6 144 41.0
BraA09t38398Z Brassica rapa HOM05D005777 ORTHO05D006854 6.9e-18 96.7 145 42.8
BcaB01g01556 Brassica carinata HOM05D005777 ORTHO05D006854 1.5e-17 95.5 145 43.4
A09p28290 Brassica napus HOM05D005777 ORTHO05D006854 1.5e-17 95.5 145 41.4
C09p35860 Brassica napus HOM05D005777 ORTHO05D006854 4.5e-17 94.0 137 43.1
BcaC04g21086 Brassica carinata HOM05D005777 ORTHO05D006854 5.8e-17 93.6 139 41.0
Aa31LG9G11240 Aethionema arabicum HOM05D005777 ORTHO05D006854 1.7e-16 92.0 69 63.8
BolC9t56419H Brassica oleracea HOM05D005777 ORTHO05D006854 4.9e-16 90.5 137 42.3
SHI06955 Sapria himalayana HOM05D005777 ORTHO05D006854 6.5e-16 90.1 106 50.9
Actinidia27306 Actinidia chinensis HOM05D005777 ORTHO05D006854 1.9e-15 88.6 66 60.6
Gohir.D02G103200 Gossypium hirsutum HOM05D005777 ORTHO05D006854 1.2e-14 85.9 153 33.3
TPR.G3392 Trifolium pratense HOM05D005777 ORTHO05D006854 3.0e-13 81.3 106 73.6
Eucgr.E00686 Eucalyptus grandis HOM05D005777 ORTHO05D006854 3.9e-13 80.9 94 48.9
Eucgr.H03743 Eucalyptus grandis HOM05D005777 ORTHO05D006854 3.9e-13 80.9 77 57.1
Lalb_Chr05g0223961 Lupinus albus HOM05D005777 ORTHO05D006854 7.4e-12 76.6 70 57.1
AagrBONN_evm.TU.Sc2ySwM_368.2767 Anthoceros agrestis HOM05D005777 ORTHO05D006854 2.4e-10 71.6 76 51.3
QL08p034398 Quercus lobata HOM05D000176 ORTHO05D000106 4.5e-09 67.4 85 38.8
QL06p042986 Quercus lobata HOM05D000529 ORTHO05D000472 5.9e-09 67.0 85 38.8
Lsat_1_v5_gn_3_40061 Lactuca sativa HOM05D005777 ORTHO05D006854 1.9e-07 62.0 90 41.1
Hma1.2p1_0338F.1_g129700 Hydrangea macrophylla HOM05D005777 ORTHO05D006854 5.5e-07 60.5 52 57.7


User provided reference genes

Program Settings