Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g099455 Medicago truncatula HOM05D000749 ORTHO05D005685 5.7e-141 504.2 250 100.0
Ca_17481_v3 Cicer arietinum L. HOM05D000749 ORTHO05D004893 1.4e-110 403.3 247 82.6
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 1.4e-110 403.3 247 82.6
Glyma.08G022600 Glycine max HOM05D000749 ORTHO05D005685 4.0e-110 401.7 262 79.0
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 1.2e-106 390.2 262 77.5
Phvul.002G298000 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 1.0e-105 387.1 262 77.1
Glyma.05G216800 Glycine max HOM05D000749 ORTHO05D005685 1.8e-102 376.3 262 75.6
Lalb_Chr09g0332451 Lupinus albus HOM05D000749 ORTHO05D005685 1.8e-102 376.3 254 75.6
Lj4g0022263 Lotus japonicus HOM05D000749 ORTHO05D005685 5.8e-101 371.3 240 78.3
Psat7g025640 Pisum sativum HOM05D000749 ORTHO05D005685 6.4e-100 367.9 222 85.6
arahy.Tifrunner.gnm1.ann1.1JV6NN Arachis hypogaea HOM05D000749 ORTHO05D005685 6.6e-97 357.8 250 74.0
arahy.Tifrunner.gnm1.ann1.YIX88E Arachis hypogaea HOM05D000749 ORTHO05D005685 2.8e-95 352.4 250 73.2
Potri.003G140500 Populus trichocarpa HOM05D000749 ORTHO05D005685 3.0e-89 332.4 251 66.5
COL.COLO4_10708 Corchorus olitorius HOM05D000749 ORTHO05D005685 1.1e-88 330.5 249 66.3
Haze_09069 Corylus avellana HOM05D000749 ORTHO05D005685 1.6e-87 326.6 252 66.7
Manes.01G049300 Manihot esculenta HOM05D000749 ORTHO05D005685 2.8e-87 325.9 240 67.1
Thecc.03G298600 Theobroma cacao HOM05D000749 ORTHO05D005685 4.0e-86 322.0 249 66.7
CSS0014286 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 8.9e-86 320.9 247 64.4
CSS0022068 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 2.0e-85 319.7 247 64.4
CiPaw.11G120800 Carya illinoinensis HOM05D000749 ORTHO05D005685 2.0e-85 319.7 250 66.0
VMungo1215G3291 Vigna mungo HOM05D000749 ORTHO05D005685 7.6e-85 317.8 243 65.8
ClCG01G001690 Citrullus lanatus HOM05D000749 ORTHO05D005685 1.3e-84 317.0 254 65.0
Sabra03G0101500 Salix brachista HOM05D000749 ORTHO05D005685 1.7e-84 316.6 258 63.6
Gohir.A12G236700 Gossypium hirsutum HOM05D000749 ORTHO05D005685 2.2e-84 316.2 247 67.2
Dinv37528 Davidia involucrata HOM05D000749 ORTHO05D005685 2.9e-84 315.8 242 67.4
Gorai.008G254700 Gossypium raimondii HOM05D000749 ORTHO05D005685 3.8e-84 315.5 247 66.8
CSS0029811 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 3.2e-83 312.4 247 64.0
QL02p030312 Quercus lobata HOM05D000749 ORTHO05D005685 3.2e-83 312.4 248 64.5
CSS0041880 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 4.2e-83 312.0 247 64.0
TWI81G0603 Tripterygium wilfordii HOM05D000749 ORTHO05D005685 7.1e-83 311.2 248 64.9
Sed0020991 Sechium edule HOM05D000749 ORTHO05D005685 1.2e-82 310.5 239 66.1
Potri.001G091100 Populus trichocarpa HOM05D000749 ORTHO05D005685 1.6e-82 310.1 245 64.1
Lj2A167G41 Lonicera japonica HOM05D000749 ORTHO05D005685 2.1e-82 309.7 228 70.6
CANSAT21G1880 Cannabis sativa HOM05D000749 ORTHO05D005685 4.6e-82 308.5 244 66.4
Hma1.2p1_0359F.1_g135200 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 4.6e-82 308.5 247 64.0
PGR042G1555 Punica granatum HOM05D000749 ORTHO05D005685 4.6e-82 308.5 250 62.8
Sabra01G0067500 Salix brachista HOM05D000749 ORTHO05D005685 6.0e-82 308.1 258 61.2
Carub.0007s1721 Capsella rubella HOM05D000749 ORTHO05D005685 7.8e-82 307.8 246 64.2
FAN18G2450 Fragaria x ananassa HOM05D000749 ORTHO05D005685 7.8e-82 307.8 258 62.4
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 1.0e-81 307.4 249 64.7
FvH4_5g04660 Fragaria vesca HOM05D000749 ORTHO05D005685 5.1e-81 305.1 254 60.6
Sp7g21860 Schrenkiella parvula HOM05D000749 ORTHO05D005685 6.6e-81 304.7 250 62.4
LjContig00312_ERROPOS870357g0005368 Lotus japonicus HOM05D000749 ORTHO05D005685 8.7e-81 304.3 189 77.8
AL7G29440 Arabidopsis lyrata HOM05D000749 ORTHO05D005685 1.1e-80 303.9 248 64.5
CARHR231300 Cardamine hirsuta HOM05D000749 ORTHO05D005685 1.9e-80 303.1 246 63.8
THA.LOC104806439 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 4.3e-80 302.0 239 65.3
Cfa012001 Carpinus fangiana HOM05D000749 ORTHO05D004893 7.3e-80 301.2 224 68.3
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 9.6e-80 300.8 240 64.2
FAN13G3049 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.3e-79 300.4 253 59.3
Glyma.11G017700 Glycine max HOM05D000749 ORTHO05D005685 2.1e-79 299.7 190 77.9
CiPaw.12G082400 Carya illinoinensis HOM05D000749 ORTHO05D005685 4.8e-79 298.5 245 62.9
FAN18G0718 Fragaria x ananassa HOM05D000749 ORTHO05D005685 6.2e-79 298.1 253 59.3
Prupe.5G120700 Prunus persica HOM05D000749 ORTHO05D004893 8.1e-79 297.7 254 60.6
ECA246G0427 Erigeron canadensis HOM05D000749 ORTHO05D005685 1.8e-78 296.6 239 61.9
TPR.G25592 Trifolium pratense HOM05D000749 ORTHO05D005685 1.8e-78 296.6 221 68.3
RcHm_v2.0_Chr7g0194721 Rosa chinensis HOM05D000749 ORTHO05D005685 3.1e-78 295.8 248 60.1
TPR.G3419 Trifolium pratense HOM05D000749 ORTHO05D005685 4.0e-78 295.4 170 87.6
AT4G23895 Arabidopsis thaliana HOM05D000749 ORTHO05D004893 6.9e-78 294.7 239 63.6
FAN08G1955 Fragaria x ananassa HOM05D000749 ORTHO05D005685 6.9e-78 294.7 260 58.5
BcaNung04079 Brassica carinata HOM05D000749 ORTHO05D005685 1.5e-77 293.5 247 61.1
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 1.5e-77 293.5 224 66.1
TAR629G1059 Trochodendron aralioides HOM05D000749 ORTHO05D005685 2.6e-77 292.7 249 61.8
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 3.4e-77 292.4 208 71.2
Atru.chr9.1976 Acer truncatum HOM05D000749 ORTHO05D005685 4.5e-77 292.0 249 62.2
Atru.chr9.1991 Acer truncatum HOM05D000749 ORTHO05D005685 4.5e-77 292.0 249 62.2
Aa31LG6G7160 Aethionema arabicum HOM05D000749 ORTHO05D005685 4.5e-77 292.0 245 61.2
Hma1.2p1_0440F.1_g153310 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 5.8e-77 291.6 263 58.6
vmacro11358 Vaccinium macrocarpon HOM05D000749 ORTHO05D005685 9.9e-77 290.8 242 62.4
BraA03t14551Z Brassica rapa HOM05D000749 ORTHO05D005685 2.2e-76 289.7 250 60.0
Solyc12g055950.2 Solanum lycopersicum HOM05D000749 ORTHO05D005685 2.2e-76 289.7 240 62.1
C07p53200 Brassica napus HOM05D000749 ORTHO05D005685 2.9e-76 289.3 251 59.8
BolC7t45815H Brassica oleracea HOM05D000749 ORTHO05D005685 2.9e-76 289.3 251 59.8
DCAR_029896 Daucus carota HOM05D000749 ORTHO05D005685 2.9e-76 289.3 242 63.2
Medtr5g009310 Medicago truncatula HOM05D000749 ORTHO05D005685 4.9e-76 288.5 186 76.3
arahy.Tifrunner.gnm1.ann1.JB76D2 Arachis hypogaea HOM05D000749 ORTHO05D005685 6.4e-76 288.1 191 71.7
Sopen12g024420 Solanum pennellii HOM05D000749 ORTHO05D005685 6.4e-76 288.1 240 61.7
Actinidia22163 Actinidia chinensis HOM05D000749 ORTHO05D005685 1.4e-75 287.0 240 61.7
BcaNung04243 Brassica carinata HOM05D000749 ORTHO05D005685 1.4e-75 287.0 252 59.9
Migut.A00638 Erythranthe guttata HOM05D000749 ORTHO05D005685 1.9e-75 286.6 247 57.5
SGA_v2.0_scaffold305G47984 Striga asiatica HOM05D000749 ORTHO05D005685 4.2e-75 285.4 249 59.8
Duzib205G1799 Durio zibethinus HOM05D000749 ORTHO05D005685 7.1e-75 284.6 248 60.9
A03p54840 Brassica napus HOM05D000749 ORTHO05D005685 9.3e-75 284.3 246 59.3
Rhsim02G0244300 Rhododendron simsii HOM05D000749 ORTHO05D005685 1.2e-74 283.9 245 61.2
Ciclev10022306m.g Citrus clementina HOM05D000749 ORTHO05D005685 2.1e-74 283.1 187 72.2
FAN13G2768 Fragaria x ananassa HOM05D000749 ORTHO05D005685 2.1e-74 283.1 257 58.8
HanXRQChr17g0534821 Helianthus annuus HOM05D000749 ORTHO05D005685 3.5e-74 282.3 242 61.2
Peaxi162Scf00117g01125 Petunia axillaris HOM05D000749 ORTHO05D005685 3.5e-74 282.3 242 60.7
Eucgr.E00870 Eucalyptus grandis HOM05D000749 ORTHO05D005685 4.6e-74 282.0 275 56.0
Oeu063515.1 Olea europaea HOM05D000749 ORTHO05D005685 6.0e-74 281.6 251 59.0
Lsat_1_v5_gn_6_83941 Lactuca sativa HOM05D000749 ORTHO05D004893 7.9e-74 281.2 241 60.2
MD06G1107400 Malus domestica HOM05D000749 ORTHO05D005685 1.0e-73 280.8 240 62.1
THA.LOC104813042 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 2.3e-73 279.6 250 59.2
Thhalv10026064m.g Eutrema salsugineum HOM05D000749 ORTHO05D005685 5.1e-73 278.5 185 73.0
MSTRG.25679 Avicennia marina HOM05D000749 ORTHO05D005685 6.7e-73 278.1 238 60.5
Gohir.D12G237900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.5e-72 276.9 185 73.5
Lalb_Chr09g0320651 Lupinus albus HOM05D000749 ORTHO05D005685 1.5e-72 276.9 194 70.6
SalBow1G4618 Salvia bowleyana HOM05D000749 ORTHO05D005685 1.9e-72 276.6 241 61.0
CAN.G390.4 Capsicum annuum HOM05D000749 ORTHO05D005685 7.4e-72 274.6 237 59.1
Nitab4.5_0000726g0060 Nicotiana tabacum HOM05D000749 ORTHO05D005685 2.8e-71 272.7 238 60.9
Phvul.002G164200 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 6.2e-71 271.6 189 71.4
PSO135G0827 Papaver somniferum HOM05D000749 ORTHO05D005685 8.1e-71 271.2 231 62.3
Cc08_g16120 Coffea canephora HOM05D000749 ORTHO05D005685 1.1e-70 270.8 187 70.1
MELO3C005770.2 Cucumis melo HOM05D000749 ORTHO05D005685 1.1e-70 270.8 195 70.3
BcaB03g12399 Brassica carinata HOM05D000749 ORTHO05D005685 1.4e-70 270.4 224 63.8
Sc07g0010060 Simmondsia chinensis HOM05D000749 ORTHO05D005685 2.4e-70 269.6 271 56.5
Gohir.D08G125900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 6.9e-70 268.1 187 71.1
Gorai.004G132800 Gossypium raimondii HOM05D000749 ORTHO05D005685 1.2e-69 267.3 188 70.7
Nitab4.5_0004010g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 2.0e-69 266.5 225 61.3
Sed0010333 Sechium edule HOM05D000749 ORTHO05D005685 3.4e-69 265.8 178 72.5
AUR62019844 Chenopodium quinoa HOM05D000749 ORTHO05D005685 4.5e-69 265.4 267 53.9
MBI06_g08470_MAGBIO Magnolia biondii HOM05D000749 ORTHO05D005685 5.8e-69 265.0 243 57.6
PSO384G3968 Papaver somniferum HOM05D000749 ORTHO05D005685 7.6e-69 264.6 226 62.8
CDE10G0735 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 1.3e-68 263.8 241 58.1
Lsat_1_v5_gn_3_10900 Lactuca sativa HOM05D000749 ORTHO05D004893 1.3e-68 263.8 242 56.2
Nitab4.5_0006775g0110 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.3e-68 263.8 184 70.1
HanXRQChr13g0415321 Helianthus annuus HOM05D000749 ORTHO05D005685 2.2e-68 263.1 180 69.4
MD14G1129100 Malus domestica HOM05D000749 ORTHO05D005685 6.4e-68 261.5 183 69.9
AUR62010845 Chenopodium quinoa HOM05D000749 ORTHO05D005685 1.4e-67 260.4 267 54.3
PGSC0003DMG400012277 Solanum tuberosum HOM05D000749 ORTHO05D005685 1.2e-66 257.3 184 67.9
Aqoxy7G00094 Aquilegia oxysepala HOM05D000749 ORTHO05D005685 1.3e-65 253.8 240 58.8
CAN.G1804.10 Capsicum annuum HOM05D000749 ORTHO05D005685 1.8e-65 253.4 184 65.2
Peaxi162Scf00074g00738 Petunia axillaris HOM05D000749 ORTHO05D005685 1.8e-65 253.4 188 68.6
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 2.3e-65 253.1 270 51.9
Hund14218 Selenicereus undatus HOM05D000749 ORTHO05D005685 3.9e-65 252.3 180 68.3
Solyc08g082420.3 Solanum lycopersicum HOM05D000749 ORTHO05D005685 8.7e-65 251.1 184 66.3
Sopen08g030670 Solanum pennellii HOM05D000749 ORTHO05D005685 8.7e-65 251.1 184 66.3
Hund11388 Selenicereus undatus HOM05D000749 ORTHO05D005685 9.6e-64 247.7 265 52.8
Sc22g0004990 Simmondsia chinensis HOM05D000749 ORTHO05D005685 9.6e-64 247.7 194 66.0
EL10Ac5g12920 Beta vulgaris HOM05D000749 ORTHO05D004893 1.1e-62 244.2 244 54.1
PGSC0003DMG400004994 Solanum tuberosum HOM05D000749 ORTHO05D005685 1.8e-62 243.4 162 71.6
Zm00001eb297840 Zea mays HOM05D000749 ORTHO05D005685 4.0e-62 242.3 238 51.7
Nn1g00225 Nelumbo nucifera HOM05D000749 ORTHO05D005685 6.9e-62 241.5 158 74.1
ECA240G0537 Erigeron canadensis HOM05D000749 ORTHO05D005685 1.2e-61 240.7 239 54.4
SalBow1G0265 Salvia bowleyana HOM05D000749 ORTHO05D005685 4.5e-61 238.8 328 44.8
HPP92_008182 Vanilla planifolia HOM05D000749 ORTHO05D005685 5.8e-61 238.4 238 53.4
HanXRQChr03g0083461 Helianthus annuus HOM05D000749 ORTHO05D005685 1.3e-60 237.3 174 68.4
unitig_88.g27644 Utricularia gibba HOM05D000749 ORTHO05D005685 3.8e-60 235.7 166 65.1
Os05g0595500 Oryza sativa ssp. japonica HOM05D000749 ORTHO05D005685 4.9e-60 235.3 232 52.2
ATR0602G082 Amborella trichopoda HOM05D000749 ORTHO05D005685 1.0e-57 227.6 225 53.3
unitig_0.g1147 Utricularia gibba HOM05D000749 ORTHO05D005685 3.3e-56 222.6 237 49.8
BolC3t20284H Brassica oleracea HOM05D000749 ORTHO05D005685 3.1e-54 216.1 195 59.0
ECA240G3820 Erigeron canadensis HOM05D000749 ORTHO05D005685 4.1e-54 215.7 147 70.7
Nitab4.5_0001210g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 6.9e-54 214.9 137 75.9
Gohir.A08G112900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.3e-52 210.7 139 70.5
Gohir.D12G237901 Gossypium hirsutum HOM05D000749 ORTHO05D005685 4.2e-51 205.7 125 78.4
BcaC01g00478 Brassica carinata HOM05D000749 ORTHO05D005685 6.1e-50 201.8 221 52.0
C03p80360 Brassica napus HOM05D000749 ORTHO05D005685 6.1e-50 201.8 221 52.0
MSTRG.13887 Avicennia marina HOM05D000749 ORTHO05D005685 1.1e-46 191.0 127 68.5
CDE10G1055 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 6.1e-42 175.3 123 66.7
Mapoly0105s0026 Marchantia polymorpha HOM05D000749 ORTHO05D005685 7.4e-40 168.3 163 51.5
TPR.G18933 Trifolium pratense HOM05D000749 ORTHO05D005685 2.5e-35 153.3 78 91.0
Pp3c8_7850 Physcomitrium patens HOM05D000749 ORTHO05D005685 8.8e-33 144.8 199 41.2
BcaC09g50933 Brassica carinata HOM05D000749 ORTHO05D005685 4.5e-29 132.5 116 56.0
Cpa.g.sc79.31 Carica papaya HOM05D000749 ORTHO05D005685 7.5e-24 115.2 113 64.6
AagrBONN_evm.TU.Sc2ySwM_344.2051 Anthoceros agrestis HOM05D000749 ORTHO05D005685 1.4e-22 110.9 104 54.8
Pp3c24_4620 Physcomitrium patens HOM05D000749 ORTHO05D005685 5.9e-21 105.5 109 51.4
CBR_g4807 Chara braunii HOM05D000749 ORTHO05D005685 4.0e-17 92.8 177 33.3
FAN04G2853 Fragaria x ananassa HOM05D000749 ORTHO05D004893 1.3e-12 77.8 60 60.0
RcHm_v2.0_Chr1g0343991 Rosa chinensis HOM05D000749 ORTHO05D005685 5.5e-11 72.4 45 64.4


User provided reference genes

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