Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g099425 Medicago truncatula HOM05D005115 ORTHO05D005703 5.6e-187 657.5 347 100.0
TPR.G3414 Trifolium pratense HOM05D005115 ORTHO05D005703 2.1e-77 293.5 208 78.8
Ca_17482_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 3.4e-75 286.2 208 74.0
Ca_17506_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 3.4e-75 286.2 208 74.0
Glyma.11G017800 Glycine max HOM05D005115 ORTHO05D005703 2.4e-68 263.5 209 69.4
Glyma.01G225300 Glycine max HOM05D005115 ORTHO05D005703 6.8e-68 261.9 209 68.9
Phvul.002G164100 Phaseolus vulgaris HOM05D005115 ORTHO05D005703 1.7e-63 247.3 208 63.9
arahy.Tifrunner.gnm1.ann1.V4I9JE Arachis hypogaea HOM05D005115 ORTHO05D005703 1.3e-61 241.1 209 65.6
arahy.Tifrunner.gnm1.ann1.M14U5A Arachis hypogaea HOM05D005115 ORTHO05D005703 2.4e-60 236.9 209 65.1
VMungo1215G1874 Vigna mungo HOM05D005115 ORTHO05D005703 2.4e-60 236.9 212 64.2
LjContig00312_ERROPOS870357g0004531 Lotus japonicus HOM05D005115 ORTHO05D005703 1.7e-58 230.7 209 63.6
CiPaw.11G120600 Carya illinoinensis HOM05D005115 ORTHO05D005703 7.3e-54 215.3 212 60.8
Cfa011998 Carpinus fangiana HOM05D005115 ORTHO05D005703 6.2e-53 212.2 211 58.3
Thecc.03G298900 Theobroma cacao HOM05D005115 ORTHO05D005703 9.9e-51 204.9 209 60.8
Gohir.A09G190300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.2e-50 203.8 210 59.0
Rhsim02G0244500 Rhododendron simsii HOM05D005115 ORTHO05D005703 2.2e-50 203.8 213 56.8
Duzib205G0660 Durio zibethinus HOM05D005115 ORTHO05D005703 6.4e-50 202.2 210 58.6
CiPaw.12G082200 Carya illinoinensis HOM05D005115 ORTHO05D005703 1.1e-49 201.4 211 60.2
Dinv37526 Davidia involucrata HOM05D005115 ORTHO05D005703 1.4e-49 201.1 209 56.9
Gorai.006G207500 Gossypium raimondii HOM05D005115 ORTHO05D005703 1.4e-49 201.1 210 58.1
Gohir.D09G185000 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.9e-49 200.7 210 54.8
Duzib068G0330 Durio zibethinus HOM05D005115 ORTHO05D005703 9.3e-49 198.4 210 56.7
Solyc08g008350.3 Solanum lycopersicum HOM05D005115 ORTHO05D005703 1.6e-48 197.6 212 57.5
Duzib084G1297 Durio zibethinus HOM05D005115 ORTHO05D005703 2.7e-48 196.8 212 58.5
Psat7g026000 Pisum sativum HOM05D005115 ORTHO05D005703 2.7e-48 196.8 118 87.3
Prupe.5G120800 Prunus persica HOM05D005115 ORTHO05D005703 8.7e-47 191.8 213 57.7
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 1.9e-46 190.7 203 56.2
Cc08_g16140 Coffea canephora HOM05D005115 ORTHO05D005703 4.3e-46 189.5 210 53.8
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 4.3e-46 189.5 213 56.3
TAR375G0477 Trochodendron aralioides HOM05D005115 ORTHO05D005703 9.6e-46 188.3 209 55.5
vmacro11350 Vaccinium macrocarpon HOM05D005115 ORTHO05D005703 3.7e-45 186.4 248 48.4
Peaxi162Scf00102g01844 Petunia axillaris HOM05D005115 ORTHO05D005703 4.8e-45 186.0 212 55.7
Cpa.g.sc79.29 Carica papaya HOM05D005115 ORTHO05D005703 8.1e-45 185.3 215 53.0
TAR375G0257 Trochodendron aralioides HOM05D005115 ORTHO05D005703 1.1e-44 184.9 209 57.4
Gohir.D11G024900 Gossypium hirsutum HOM05D005115 ORTHO05D005703 6.9e-44 182.2 210 53.3
Gohir.A11G025300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 9.0e-44 181.8 210 53.8
Gorai.007G026700 Gossypium raimondii HOM05D005115 ORTHO05D005703 1.5e-43 181.0 210 52.9
FAN18G1353 Fragaria x ananassa HOM05D005115 ORTHO05D005703 2.0e-43 180.6 208 55.3
FAN13G0546 Fragaria x ananassa HOM05D005115 ORTHO05D005703 3.4e-43 179.9 208 56.7
FAN13G3196 Fragaria x ananassa HOM05D005115 ORTHO05D005703 3.4e-43 179.9 208 56.7
FvH4_5g04680 Fragaria vesca HOM05D005115 ORTHO05D005703 1.0e-42 178.3 208 55.3
Nitab4.5_0002231g0060 Nicotiana tabacum HOM05D005115 ORTHO05D005703 2.2e-42 177.2 240 47.9
Sc22g0004980 Simmondsia chinensis HOM05D005115 ORTHO05D005703 8.4e-42 175.3 209 52.6
CsaV3_4G006640 Cucumis sativus L. HOM05D005115 ORTHO05D005703 1.9e-41 174.1 209 51.7
TWI81G0084 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 1.9e-41 174.1 211 52.6
Haze_09072 Corylus avellana HOM05D005115 ORTHO05D005703 9.3e-41 171.8 308 40.9
Sed0016945 Sechium edule HOM05D005115 ORTHO05D005703 9.3e-41 171.8 215 50.2
Nitab4.5_0007367g0090 Nicotiana tabacum HOM05D005115 ORTHO05D005703 1.6e-40 171.0 238 47.5
TWI15G1136 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 1.3e-39 167.9 211 51.2
Potri.003G140700 Populus trichocarpa HOM05D005115 ORTHO05D005703 1.8e-39 167.5 207 52.2
Actinidia22166 Actinidia chinensis HOM05D005115 ORTHO05D005703 2.3e-39 167.2 195 59.0
CANSAT21G0870 Cannabis sativa HOM05D005115 ORTHO05D005703 2.3e-39 167.2 225 54.2
Oeu055028.2 Olea europaea HOM05D005115 ORTHO05D005703 2.3e-39 167.2 257 42.4
Hma1.2p1_0440F.1_g153350 Hydrangea macrophylla HOM05D005115 ORTHO05D005703 5.1e-39 166.0 229 50.7
Manes.02G009400 Manihot esculenta HOM05D005115 ORTHO05D005703 6.7e-39 165.6 211 57.3
ClCG07G011580 Citrullus lanatus HOM05D005115 ORTHO05D005703 1.1e-38 164.9 212 50.0
RcHm_v2.0_Chr7g0194701 Rosa chinensis HOM05D005115 ORTHO05D005703 2.5e-38 163.7 194 57.7
Potri.001G090900 Populus trichocarpa HOM05D005115 ORTHO05D005703 5.7e-38 162.5 207 49.8
Aqoxy7G00093 Aquilegia oxysepala HOM05D005115 ORTHO05D005703 1.3e-37 161.4 211 52.1
AUR62010847 Chenopodium quinoa HOM05D000034 ORTHO05D005703 2.1e-37 160.6 211 48.3
Sabra01G0067300 Salix brachista HOM05D005115 ORTHO05D005703 2.1e-37 160.6 207 49.8
Atru.chr9.1972 Acer truncatum HOM05D005115 ORTHO05D005703 2.8e-37 160.2 189 58.2
Atru.chr9.1986 Acer truncatum HOM05D005115 ORTHO05D005703 2.8e-37 160.2 189 58.2
ECA240G1127 Erigeron canadensis HOM05D005115 ORTHO05D005703 2.8e-37 160.2 219 48.9
Migut.A00633 Erythranthe guttata HOM05D005115 ORTHO05D005703 6.2e-37 159.1 215 54.9
ECA240G3401 Erigeron canadensis HOM05D000003 ORTHO05D000004 1.8e-36 157.5 223 47.1
Eucgr.D01748 Eucalyptus grandis HOM05D005115 ORTHO05D005703 1.8e-36 157.5 215 47.4
HanXRQChr03g0083441 Helianthus annuus HOM05D005115 ORTHO05D005703 3.4e-35 153.3 202 49.0
PGR031G1480 Punica granatum HOM05D005115 ORTHO05D005703 1.3e-34 151.4 212 47.2
SalBow6G1704 Salvia bowleyana HOM05D005115 ORTHO05D005703 2.9e-34 150.2 263 40.7
SalBow8G0540 Salvia bowleyana HOM05D005115 ORTHO05D005703 2.9e-34 150.2 263 40.7
PGR042G1877 Punica granatum HOM05D005115 ORTHO05D005703 1.1e-33 148.3 208 49.5
EL10Ac5g12921 Beta vulgaris HOM05D005115 ORTHO05D005703 1.4e-33 147.9 255 43.5
Lsat_1_v5_gn_6_83921 Lactuca sativa HOM05D005115 ORTHO05D005703 3.5e-32 143.3 212 47.2
TAR636G3146 Trochodendron aralioides HOM05D005115 ORTHO05D005703 3.5e-32 143.3 125 63.2
MBI06_g08472_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 4.6e-32 142.9 190 50.5
GSVIVG01019540001 Vitis vinifera HOM05D005115 ORTHO05D005703 2.3e-31 140.6 118 66.1
CSS0002161 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 3.0e-31 140.2 121 66.9
CSS0007380 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 3.0e-31 140.2 121 66.9
Hund14216 Selenicereus undatus HOM05D005115 ORTHO05D005703 3.9e-31 139.8 216 45.4
PSO384G2123 Papaver somniferum HOM05D005115 ORTHO05D005703 5.1e-31 139.4 222 48.6
PGSC0003DMG400005793 Solanum tuberosum HOM05D005115 ORTHO05D005703 2.5e-30 137.1 119 65.5
AT4G10970 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 3.3e-30 136.7 211 52.1
Thhalv10028955m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 3.3e-30 136.7 210 46.7
Sopen08g004230 Solanum pennellii HOM05D005115 ORTHO05D005703 3.3e-30 136.7 119 64.7
CAN.G792.37 Capsicum annuum HOM05D005115 ORTHO05D005703 4.3e-30 136.3 120 62.5
PSO135G0387 Papaver somniferum HOM05D005115 ORTHO05D005703 5.7e-30 136.0 221 47.1
HanXRQChr13g0415351 Helianthus annuus HOM05D005115 ORTHO05D005703 7.4e-30 135.6 204 46.6
CDE04G3646 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 9.7e-30 135.2 180 50.0
MSTRG.25681 Avicennia marina HOM05D005115 ORTHO05D005703 2.8e-29 133.7 118 63.6
BcaC01g04648 Brassica carinata HOM05D005115 ORTHO05D005703 2.8e-29 133.7 211 46.0
MELO3C016298.2 Cucumis melo HOM05D005115 ORTHO05D005703 2.8e-29 133.7 247 40.1
Carub.0006s2972 Capsella rubella HOM05D005115 ORTHO05D005703 1.1e-28 131.7 215 45.6
AL6G45070 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 1.8e-28 131.0 212 51.4
THA.LOC104815118 Tarenaya hassleriana HOM05D005115 ORTHO05D005703 1.8e-28 131.0 221 44.8
CARHR255630 Cardamine hirsuta HOM05D005115 ORTHO05D005703 6.9e-28 129.0 229 43.7
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 9.0e-28 128.6 203 44.3
Sed0001802 Sechium edule HOM05D005115 ORTHO05D005703 2.6e-27 127.1 214 44.9
unitig_0.g2839 Utricularia gibba HOM05D005115 ORTHO05D005703 3.4e-27 126.7 138 53.6
Sp6g06500 Schrenkiella parvula HOM05D005115 ORTHO05D005703 5.9e-27 125.9 211 45.5
BcaB01g02726 Brassica carinata HOM05D005115 ORTHO05D005703 7.7e-27 125.6 210 43.8
AUR62019846 Chenopodium quinoa HOM05D005115 ORTHO05D005703 7.7e-27 125.6 119 60.5
C03p35310 Brassica napus HOM05D005115 ORTHO05D005703 1.7e-26 124.4 208 44.7
COL.COLO4_10710 Corchorus olitorius HOM05D005115 ORTHO05D005703 1.7e-26 124.4 115 61.7
Aa31LG9G11140 Aethionema arabicum HOM05D005115 ORTHO05D005703 1.1e-25 121.7 256 37.9
Lalb_Chr05g0211561 Lupinus albus HOM05D005115 ORTHO05D005703 4.2e-25 119.8 104 64.4
Hund11387 Selenicereus undatus HOM05D005115 ORTHO05D005703 4.2e-25 119.8 310 34.2
HPP92_002918 Vanilla planifolia HOM05D005115 ORTHO05D005703 7.9e-24 115.5 217 39.6
Sabra03G0101600 Salix brachista HOM05D000906 ORTHO05D000713 6.7e-23 112.5 301 34.9
MBI07_g07104_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 1.5e-22 111.3 207 42.0
CDE03G0211 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 3.3e-22 110.2 164 46.3
MD06G1108200 Malus domestica HOM05D005115 ORTHO05D005703 1.3e-21 108.2 98 62.2
BolC3t15841H Brassica oleracea HOM05D005115 ORTHO05D005703 2.8e-21 107.1 120 55.0
A03p29200 Brassica napus HOM05D005115 ORTHO05D005703 4.8e-21 106.3 233 39.9
Os08g0374200 Oryza sativa ssp. japonica HOM05D005115 ORTHO05D005703 1.5e-19 101.3 121 50.4
Zm00001eb042700 Zea mays HOM05D005115 ORTHO05D005703 3.4e-19 100.1 135 48.1
Zm00001eb178470 Zea mays HOM05D005115 ORTHO05D005703 3.4e-19 100.1 189 39.2
Sp7g21880 Schrenkiella parvula HOM05D005115 ORTHO05D005703 2.2e-18 97.4 207 38.2
ATR0602G161 Amborella trichopoda HOM05D005115 ORTHO05D005703 1.2e-16 91.7 134 44.8
AT4G23910 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 3.6e-16 90.1 211 37.4
BcaNung01098 Brassica carinata HOM05D005115 ORTHO05D005703 3.6e-16 90.1 215 36.3
A01p15220 Brassica napus HOM05D005115 ORTHO05D005703 3.6e-16 90.1 206 37.4
SHI06967 Sapria himalayana HOM05D005115 ORTHO05D005703 7.9e-16 89.0 99 51.5
Thhalv10026287m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 1.4e-15 88.2 213 38.5
Gohir.D12G237999 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.4e-15 88.2 115 48.7
Gohir.D12G238133 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.4e-15 88.2 115 48.7
Gorai.008G254900 Gossypium raimondii HOM05D005115 ORTHO05D005703 1.4e-15 88.2 115 48.7
Lj4g0005021 Lotus japonicus HOM05D005115 ORTHO05D005703 2.3e-15 87.4 83 56.6
SEGI_32593 Sequoiadendron giganteum HOM05D005115 ORTHO05D005703 3.9e-15 86.7 194 42.3
arahy.Tifrunner.gnm1.ann1.ULQ1VN Arachis hypogaea HOM05D005115 ORTHO05D005703 8.8e-15 85.5 70 65.7
AL7G29420 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 3.3e-14 83.6 210 38.1
Carub.0007s1718 Capsella rubella HOM05D005115 ORTHO05D005703 9.7e-14 82.0 210 36.7
Medtr1g025900 Medicago truncatula HOM05D027948 ORTHO05D005703 1.7e-13 81.3 97 50.5
C01p19150 Brassica napus HOM05D005115 ORTHO05D005703 3.1e-12 77.0 120 43.3
Medtr2g006120 Medicago truncatula HOM05D027948 ORTHO05D005703 3.1e-12 77.0 47 76.6
Lalb_Chr05g0211571 Lupinus albus HOM05D005115 ORTHO05D005703 7.0e-12 75.9 94 51.1
BraA01t01460Z Brassica rapa HOM05D005115 ORTHO05D005703 9.1e-12 75.5 134 38.8
BolC1t01841H Brassica oleracea HOM05D005115 ORTHO05D005703 1.2e-11 75.1 120 42.5
CARHR231320 Cardamine hirsuta HOM05D005115 ORTHO05D005703 2.0e-11 74.3 122 43.4
BcaC09g50931 Brassica carinata HOM05D005115 ORTHO05D005703 3.5e-11 73.6 251 32.3
DCAR_029907 Daucus carota HOM05D005115 ORTHO05D005703 2.2e-10 70.9 73 60.3
Oeu029936.1 Olea europaea HOM05D005115 ORTHO05D005703 4.2e-09 66.6 52 63.5
Lsat_1_v5_gn_1_118201 Lactuca sativa HOM05D009751 ORTHO05D005703 5.5e-09 66.2 57 57.9
MD06G1108300 Malus domestica HOM05D005115 ORTHO05D005703 5.5e-09 66.2 56 66.1
Lsat_1_v5_gn_8_68541 Lactuca sativa HOM05D005115 ORTHO05D018183 9.4e-09 65.5 64 53.1
CSS0029994 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 2.7e-08 63.9 93 45.2
CSS0045410 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 2.7e-08 63.9 93 45.2
QL02p030259 Quercus lobata HOM05D005115 ORTHO05D005703 2.7e-08 63.9 88 46.6
FAN04G1053 Fragaria x ananassa HOM05D005115 ORTHO05D005703 8.0e-08 62.4 71 52.1
Medtr4g057580 Medicago truncatula HOM05D027948 ORTHO05D261888 1.5e-06 58.2 33 87.9


User provided reference genes

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