Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g099415 Medicago truncatula HOM05D006572 ORTHO05D008181 8.0e-303 1043.1 587 100.0
Lj4g0027687 Lotus japonicus HOM05D006572 ORTHO05D008181 2.1e-210 736.1 603 68.7
Psat7g026640 Pisum sativum HOM05D006572 ORTHO05D008181 2.4e-206 722.6 580 73.8
VMungo0251G1431 Vigna mungo HOM05D006572 ORTHO05D008181 5.0e-204 714.9 599 67.1
Lalb_Chr05g0224161 Lupinus albus HOM05D006572 ORTHO05D008181 2.6e-192 676.0 585 65.8
Glyma.05G216500 Glycine max HOM05D006572 ORTHO05D008181 5.4e-190 668.3 583 66.4
Phvul.002G297700 Phaseolus vulgaris HOM05D006572 ORTHO05D008181 8.6e-188 661.0 585 64.6
Ca_17483_v3 Cicer arietinum L. HOM05D006572 ORTHO05D008181 2.2e-175 619.8 601 63.6
Ca_17508_v3 Cicer arietinum L. HOM05D006572 ORTHO05D008181 2.2e-175 619.8 601 63.6
TPR.G3379 Trifolium pratense HOM05D006572 ORTHO05D008181 1.6e-173 613.6 583 67.1
COL.COLO4_10694 Corchorus olitorius HOM05D006572 ORTHO05D008181 6.0e-157 558.5 595 55.1
arahy.Tifrunner.gnm1.ann1.GR96MW Arachis hypogaea HOM05D006572 ORTHO05D008181 8.9e-153 544.7 585 59.8
FAN04G0113 Fragaria x ananassa HOM05D006572 ORTHO05D008181 2.2e-151 540.0 605 49.9
Thecc.03G297200 Theobroma cacao HOM05D006572 ORTHO05D008181 2.9e-151 539.7 587 55.5
arahy.Tifrunner.gnm1.ann1.Z469MH Arachis hypogaea HOM05D006572 ORTHO05D008181 1.3e-148 530.8 585 58.6
FAN18G3438 Fragaria x ananassa HOM05D006572 ORTHO05D008181 1.8e-145 520.4 601 49.6
FAN18G4203 Fragaria x ananassa HOM05D006572 ORTHO05D008181 7.1e-142 508.4 616 49.5
FvH4_5g04510 Fragaria vesca HOM05D006572 ORTHO05D008181 3.1e-137 493.0 606 49.2
Prupe.5G118200 Prunus persica HOM05D006572 ORTHO05D008181 2.6e-136 490.0 588 52.6
FAN08G2039 Fragaria x ananassa HOM05D006572 ORTHO05D008181 1.7e-135 487.3 612 50.8
TWI60G0540 Tripterygium wilfordii HOM05D006572 ORTHO05D008181 3.2e-134 483.0 572 53.7
Duzib205G1524 Durio zibethinus HOM05D006572 ORTHO05D008181 1.6e-133 480.7 574 52.3
Manes.02G010400 Manihot esculenta HOM05D006572 ORTHO05D008181 1.0e-132 478.0 573 50.6
Ciclev10019283m.g Citrus clementina HOM05D006572 ORTHO05D008181 7.4e-131 471.9 610 50.2
CiPaw.12G083500 Carya illinoinensis HOM05D006572 ORTHO05D008181 2.0e-128 463.8 582 53.3
Duzib068G0791 Durio zibethinus HOM05D006572 ORTHO05D008181 9.3e-126 454.9 591 50.4
Potri.001G092000 Populus trichocarpa HOM05D006572 ORTHO05D008181 3.5e-125 453.0 587 49.4
MD14G1128100 Malus domestica HOM05D006572 ORTHO05D008181 4.6e-125 452.6 580 53.3
EL10Ac5g12911 Beta vulgaris HOM05D006572 ORTHO05D008181 3.0e-124 449.9 612 47.7
Haze_08618 Corylus avellana HOM05D006572 ORTHO05D008181 2.6e-120 436.8 534 54.3
Nitab4.5_0005537g0050 Nicotiana tabacum HOM05D006572 ORTHO05D008181 5.0e-119 432.6 587 48.2
Eucgr.E00859 Eucalyptus grandis HOM05D006572 ORTHO05D008181 4.2e-118 429.5 587 43.4
ECA233G0093 Erigeron canadensis HOM05D006572 ORTHO05D008181 1.2e-117 427.9 577 49.4
MSTRG.25670 Avicennia marina HOM05D006572 ORTHO05D008181 2.7e-117 426.8 568 49.1
GSVIVG01019526001 Vitis vinifera HOM05D006572 ORTHO05D008181 3.9e-116 422.9 569 48.7
Gohir.D03G082800 Gossypium hirsutum HOM05D006572 ORTHO05D008181 1.1e-115 421.4 573 43.6
CSS0002826 Camellia sinensis var. sinensis HOM05D006572 ORTHO05D008181 7.4e-115 418.7 581 46.3
Rhsim02G0242800 Rhododendron simsii HOM05D006572 ORTHO05D008181 1.6e-114 417.5 575 45.7
Lj8C208G13 Lonicera japonica HOM05D006572 ORTHO05D008181 2.2e-114 417.2 569 47.1
RcHm_v2.0_Chr7g0194941 Rosa chinensis HOM05D006572 ORTHO05D008181 4.8e-114 416.0 606 47.0
SalBow1G0494 Salvia bowleyana HOM05D006572 ORTHO05D008181 8.2e-114 415.2 537 50.5
Migut.A00646 Erythranthe guttata HOM05D006572 ORTHO05D008181 1.2e-112 411.4 579 46.5
Peaxi162Scf00074g00932 Petunia axillaris HOM05D006572 ORTHO05D008181 2.2e-111 407.1 586 48.1
Sabra01G0068400 Salix brachista HOM05D006572 ORTHO05D008181 5.0e-111 406.0 587 47.0
SGA_v2.0_scaffold96G28963 Striga asiatica HOM05D006572 ORTHO05D008181 1.9e-110 404.1 598 47.5
Gorai.003G080600 Gossypium raimondii HOM05D006572 ORTHO05D008181 1.4e-108 397.9 573 45.4
SHI08936 Sapria himalayana HOM05D006572 ORTHO05D008181 1.8e-108 397.5 606 41.7
Gohir.A02G101400 Gossypium hirsutum HOM05D006572 ORTHO05D008181 2.3e-108 397.1 573 45.4
Cfa021209 Carpinus fangiana HOM05D006572 ORTHO05D008181 3.0e-108 396.7 513 53.2
MBI06_g08449_MAGBIO Magnolia biondii HOM05D006572 ORTHO05D008181 7.4e-107 392.1 523 47.6
Ah.12g052520 Amaranthus hybridus HOM05D006572 ORTHO05D008181 3.7e-106 389.8 581 46.5
Nitab4.5_0001231g0070 Nicotiana tabacum HOM05D006572 ORTHO05D008181 1.1e-105 388.3 615 44.1
Actinidia04204 Actinidia chinensis HOM05D006572 ORTHO05D008181 6.9e-105 385.6 574 43.6
HanXRQChr02g0047891 Helianthus annuus HOM05D006572 ORTHO05D008181 4.5e-104 382.9 575 46.6
Aqoxy5G04214 Aquilegia oxysepala HOM05D006572 ORTHO05D008181 7.7e-104 382.1 582 44.0
AUR62019834 Chenopodium quinoa HOM05D006572 ORTHO05D008181 2.2e-103 380.6 558 44.4
CANSAT21G1897 Cannabis sativa HOM05D006572 ORTHO05D008181 1.4e-102 377.9 571 46.8
Oeu031670.2 Olea europaea HOM05D006572 ORTHO05D008181 3.2e-102 376.7 608 43.3
MELO3C016288.2 Cucumis melo HOM05D006572 ORTHO05D008181 2.1e-101 374.0 602 42.4
Hund11391 Selenicereus undatus HOM05D006572 ORTHO05D008181 2.3e-100 370.5 589 43.1
Nn3g19021 Nelumbo nucifera HOM05D006572 ORTHO05D008181 4.4e-99 366.3 595 43.7
A03p54790 Brassica napus HOM05D006572 ORTHO05D008181 2.2e-98 364.0 576 44.1
BraA03t14546Z Brassica rapa HOM05D006572 ORTHO05D008181 2.2e-98 364.0 576 44.1
DCAR_029886 Daucus carota HOM05D006572 ORTHO05D008181 4.8e-98 362.8 578 41.2
BcaNung04237 Brassica carinata HOM05D006572 ORTHO05D008181 1.2e-96 358.2 579 43.4
C07p53150 Brassica napus HOM05D006572 ORTHO05D008181 1.2e-96 358.2 579 43.4
Cc08_g16020 Coffea canephora HOM05D006572 ORTHO05D008181 1.6e-96 357.8 592 44.9
PGR042G1206 Punica granatum HOM05D006572 ORTHO05D008181 2.6e-96 357.1 589 42.1
Sed0014568 Sechium edule HOM05D006572 ORTHO05D008181 3.5e-96 356.7 549 42.8
PGSC0003DMG400012287 Solanum tuberosum HOM05D006572 ORTHO05D008181 1.3e-95 354.8 583 45.3
Lsat_1_v5_gn_6_12380 Lactuca sativa HOM05D006572 ORTHO05D008181 1.7e-95 354.4 580 44.7
CARHR231220 Cardamine hirsuta HOM05D006572 ORTHO05D008181 2.2e-95 354.0 570 45.6
PSO384G1203 Papaver somniferum HOM05D006572 ORTHO05D008181 3.8e-95 353.2 585 41.7
Sopen08g030540 Solanum pennellii HOM05D006572 ORTHO05D008181 3.8e-95 353.2 583 45.3
BolC7t45811H Brassica oleracea HOM05D006572 ORTHO05D008181 1.5e-94 351.3 579 43.0
ClCG07G015010 Citrullus lanatus HOM05D006572 ORTHO05D008181 5.5e-94 349.4 575 42.1
Dinv37535 Davidia involucrata HOM05D006572 ORTHO05D008181 7.2e-94 349.0 354 53.1
Solyc08g082270.3 Solanum lycopersicum HOM05D006572 ORTHO05D008181 5.2e-92 342.8 583 44.9
AUR62010836 Chenopodium quinoa HOM05D006572 ORTHO05D008181 3.3e-91 340.1 585 43.2
Dinv38835 Davidia involucrata HOM05D006572 ORTHO05D008181 5.7e-91 339.3 492 46.1
ATR0188G004 Amborella trichopoda HOM05D006572 ORTHO05D008181 7.5e-91 339.0 572 42.7
TAR636G1103 Trochodendron aralioides HOM05D006572 ORTHO05D008181 1.4e-89 334.7 509 44.6
vmacro11428 Vaccinium macrocarpon HOM05D006572 ORTHO05D008181 7.7e-88 328.9 590 40.7
TAR629G2735 Trochodendron aralioides HOM05D006572 ORTHO05D008181 1.4e-84 318.2 382 46.1
CAN.G532.118 Capsicum annuum HOM05D006572 ORTHO05D008181 4.0e-84 316.6 496 48.0
Pp3c22_12260 Physcomitrium patens HOM05D006572 ORTHO05D008181 1.7e-82 311.2 605 34.0
Carub.0007s1729 Capsella rubella HOM05D006572 ORTHO05D008181 3.8e-79 300.1 567 42.7
THA.LOC104815028 Tarenaya hassleriana HOM05D006572 ORTHO05D008181 9.8e-75 285.4 576 36.8
Os05g0212200 Oryza sativa ssp. japonica HOM05D006572 ORTHO05D008181 4.9e-74 283.1 570 36.5
CsaV3_4G006550 Cucumis sativus L. HOM05D006572 ORTHO05D008181 6.3e-74 282.7 501 39.7
AL7G29520 Arabidopsis lyrata HOM05D006572 ORTHO05D008181 1.6e-72 278.1 570 41.6
SEGI_00989 Sequoiadendron giganteum HOM05D006572 ORTHO05D008181 2.7e-72 277.3 595 38.2
AT4G23840 Arabidopsis thaliana HOM05D006572 ORTHO05D008181 1.7e-71 274.6 568 40.7
HPP92_024023 Vanilla planifolia HOM05D006572 ORTHO05D008181 5.0e-71 273.1 569 39.4
Atru.BG.201.p Acer truncatum HOM05D006572 ORTHO05D008181 1.0e-68 265.4 366 45.9
Thhalv10024706m.g Eutrema salsugineum HOM05D006572 ORTHO05D008181 2.0e-67 261.2 580 38.8
Sp7g21790 Schrenkiella parvula HOM05D006572 ORTHO05D008181 3.4e-67 260.4 578 38.4
CDE03G0094 Ceratophyllum demersum HOM05D006572 ORTHO05D008181 2.9e-66 257.3 540 40.4
Zm00001eb350650 Zea mays HOM05D006572 ORTHO05D008181 3.0e-63 247.3 576 34.5
SMO232G0056 Selaginella moellendorffii HOM05D006572 ORTHO05D008181 5.0e-63 246.5 517 33.7
Aa31LG6G7050 Aethionema arabicum HOM05D006572 ORTHO05D008181 1.5e-62 245.0 576 38.7
Sc22g0005020 Simmondsia chinensis HOM05D006572 ORTHO05D008181 1.5e-62 245.0 466 42.1
BcaNung04088 Brassica carinata HOM05D006572 ORTHO05D008181 8.3e-58 229.2 522 36.0
FAN13G1782 Fragaria x ananassa HOM05D006572 ORTHO05D008181 1.5e-46 191.8 322 39.4
Dinv37534 Davidia involucrata HOM05D006572 ORTHO05D008181 1.6e-29 135.2 212 49.1
TAR376G0673 Trochodendron aralioides HOM05D006572 ORTHO05D008181 6.4e-26 123.2 157 47.1
Hma1.2p1_0450F.1_g155520 Hydrangea macrophylla HOM05D006572 ORTHO05D008181 1.2e-24 119.0 175 41.1
unitig_748.g8130 Utricularia gibba HOM05D006572 ORTHO05D008181 1.9e-22 111.7 222 36.5
unitig_748.g8129 Utricularia gibba HOM05D006572 ORTHO05D008181 9.6e-22 109.4 153 40.5
Hma1.2p1_1530F.1_g289190 Hydrangea macrophylla HOM05D006572 ORTHO05D008181 2.1e-21 108.2 195 35.9
TAR629G3536 Trochodendron aralioides HOM05D006572 ORTHO05D008181 4.6e-16 90.5 185 49.2
CBR_g39933 Chara braunii HOM05D006572 ORTHO05D008181 6.0e-16 90.1 556 25.2
Medtr0050s0150 Medicago truncatula HOM05D006572 ORTHO05D008181 3.9e-15 87.4 126 50.0
Hma1.2p1_0082F.1_g042550 Hydrangea macrophylla HOM05D006572 ORTHO05D008181 7.6e-11 73.2 136 38.2
Actinidia27580 Actinidia chinensis HOM05D006572 ORTHO05D008181 1.6e-08 65.5 69 43.5
QL12p023582 Quercus lobata HOM05D006572 ORTHO05D008181 6.0e-08 63.5 48 66.7
QL93p2003_0058 Quercus lobata HOM05D006572 ORTHO05D008181 1.8e-07 62.0 48 64.6
Cpa.g.sc79.39 Carica papaya HOM05D006572 ORTHO05D008181 1.5e-06 58.9 73 49.3
COL.COLO4_23949 Corchorus olitorius HOM05D000311 ORTHO05D000183 1.9e-06 58.5 98 40.8


User provided reference genes

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