Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g099150 Medicago truncatula HOM05D004421 ORTHO05D005227 6.6e-54 213.8 107 100.0
Medtr8g016300 Medicago truncatula HOM05D004421 ORTHO05D005227 7.3e-53 210.3 107 98.1
TPR.G7933 Trifolium pratense HOM05D004421 ORTHO05D005227 8.9e-51 203.4 105 94.3
Psat4g220560 Pisum sativum HOM05D004421 ORTHO05D005227 1.7e-49 199.1 101 96.0
TPR.G1800 Trifolium pratense HOM05D004421 ORTHO05D005227 3.7e-49 198.0 103 92.2
Lalb_Chr10g0105671 Lupinus albus HOM05D004421 ORTHO05D005227 2.4e-48 195.3 104 92.3
LjContig00564g0020145 Lotus japonicus HOM05D004421 ORTHO05D005227 3.2e-48 194.9 103 90.3
LjContig00564g0024160 Lotus japonicus HOM05D004421 ORTHO05D005227 3.2e-48 194.9 103 90.3
Ca_23316_v3 Cicer arietinum L. HOM05D004421 ORTHO05D005227 4.1e-48 194.5 103 90.3
LjContig00564g0000485 Lotus japonicus HOM05D004421 ORTHO05D005227 9.2e-48 193.4 103 89.3
LjContig00564g0024311 Lotus japonicus HOM05D004421 ORTHO05D005227 9.2e-48 193.4 103 89.3
arahy.Tifrunner.gnm1.ann1.J4LN0V Arachis hypogaea HOM05D004421 ORTHO05D005227 4.6e-47 191.0 104 87.5
arahy.Tifrunner.gnm1.ann1.BKRM87 Arachis hypogaea HOM05D004421 ORTHO05D005227 6.0e-47 190.7 104 87.5
Hma1.2p1_0445F.1_g154450 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 8.6e-46 186.8 104 86.5
Cfa014325 Carpinus fangiana HOM05D004421 ORTHO05D005227 1.1e-45 186.4 104 86.5
Glyma.14G047100 Glycine max HOM05D004421 ORTHO05D005227 1.5e-45 186.0 102 87.3
Phvul.008G212200 Phaseolus vulgaris HOM05D004421 ORTHO05D005227 1.9e-45 185.7 102 86.3
VMungo0647G1664 Vigna mungo HOM05D004421 ORTHO05D005227 1.9e-45 185.7 102 87.3
QL10p065608 Quercus lobata HOM05D004421 ORTHO05D005227 3.3e-45 184.9 104 84.6
QL08p031014 Quercus lobata HOM05D004421 ORTHO05D005227 7.3e-45 183.7 104 84.6
Haze_12777 Corylus avellana HOM05D004421 ORTHO05D005227 1.2e-44 183.0 104 85.6
PGR042G0750 Punica granatum HOM05D004421 ORTHO05D005227 1.2e-44 183.0 104 85.6
QL10p065434 Quercus lobata HOM05D004421 ORTHO05D005227 1.2e-44 183.0 104 83.7
Eucgr.B01010 Eucalyptus grandis HOM05D004421 ORTHO05D005227 2.8e-44 181.8 101 86.1
Glyma.02G269800 Glycine max HOM05D004421 ORTHO05D005227 3.6e-44 181.4 102 85.3
Lsat_1_v5_gn_7_92700 Lactuca sativa HOM05D004421 ORTHO05D005227 4.7e-44 181.0 104 82.7
CSS0000360 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 6.2e-44 180.6 104 81.7
CSS0029217 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 6.2e-44 180.6 104 81.7
HanXRQChr04g0126911 Helianthus annuus HOM05D004421 ORTHO05D005227 8.1e-44 180.3 104 81.7
Prupe.3G211700 Prunus persica HOM05D004421 ORTHO05D005227 8.1e-44 180.3 104 84.6
Hma1.2p1_0177F.1_g077900 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 1.1e-43 179.9 105 80.0
Hma1.2p1_0177F.1_g077905 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 1.1e-43 179.9 105 80.0
AUR62030797 Chenopodium quinoa HOM05D004421 ORTHO05D005227 1.4e-43 179.5 104 82.7
FAN02G1632 Fragaria x ananassa HOM05D004421 ORTHO05D005227 1.4e-43 179.5 103 86.4
AUR62030497 Chenopodium quinoa HOM05D004421 ORTHO05D005227 1.8e-43 179.1 100 86.0
vmacro09354 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 1.8e-43 179.1 104 80.8
GSVIVG01036899001 Vitis vinifera HOM05D004421 ORTHO05D005227 2.4e-43 178.7 98 87.8
CsaV3_2G034620 Cucumis sativus L. HOM05D004421 ORTHO05D005227 3.1e-43 178.3 104 85.6
ECA236G3405 Erigeron canadensis HOM05D004421 ORTHO05D005227 3.1e-43 178.3 98 85.7
FvH4_6g42460 Fragaria vesca HOM05D004421 ORTHO05D005227 3.1e-43 178.3 103 85.4
FAN05G5559 Fragaria x ananassa HOM05D004421 ORTHO05D005227 3.1e-43 178.3 103 85.4
FAN09G1846 Fragaria x ananassa HOM05D004421 ORTHO05D005227 3.1e-43 178.3 103 85.4
FAN14G1774 Fragaria x ananassa HOM05D004421 ORTHO05D005227 3.1e-43 178.3 103 85.4
RcHm_v2.0_Chr2g0158361 Rosa chinensis HOM05D004421 ORTHO05D005227 3.1e-43 178.3 103 85.4
CiPaw.08G089000 Carya illinoinensis HOM05D004421 ORTHO05D005227 4.0e-43 177.9 101 86.1
Sed0012667 Sechium edule HOM05D004421 ORTHO05D005227 4.0e-43 177.9 104 84.6
DCAR_019262 Daucus carota HOM05D004421 ORTHO05D005227 5.2e-43 177.6 100 85.0
Rhsim04G0051300 Rhododendron simsii HOM05D004421 ORTHO05D005227 5.2e-43 177.6 101 86.1
Ciclev10009985m.g Citrus clementina HOM05D004421 ORTHO05D005227 6.8e-43 177.2 103 83.5
CiPaw.03G156500 Carya illinoinensis HOM05D004421 ORTHO05D005227 8.9e-43 176.8 101 84.2
ClCG02G009100 Citrullus lanatus HOM05D004421 ORTHO05D005227 8.9e-43 176.8 103 82.5
DCAR_012923 Daucus carota HOM05D004421 ORTHO05D005227 8.9e-43 176.8 104 80.8
CAN.G149.31 Capsicum annuum HOM05D004421 ORTHO05D005227 1.2e-42 176.4 104 81.7
TAR629G1061 Trochodendron aralioides HOM05D004421 ORTHO05D005227 1.2e-42 176.4 100 85.0
Oeu013122.1 Olea europaea HOM05D004421 ORTHO05D005227 1.5e-42 176.0 100 86.0
CANSAT64G1364 Cannabis sativa HOM05D004421 ORTHO05D005227 2.0e-42 175.6 104 81.7
Potri.002G225600 Populus trichocarpa HOM05D004421 ORTHO05D005227 2.0e-42 175.6 104 81.7
Aqoxy7G01112 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 2.6e-42 175.3 100 83.0
CAN.G358.76 Capsicum annuum HOM05D004421 ORTHO05D005227 3.4e-42 174.9 104 80.8
ECA234G2260 Erigeron canadensis HOM05D004421 ORTHO05D005227 3.4e-42 174.9 98 85.7
EL10Ac5g12553 Beta vulgaris HOM05D004421 ORTHO05D005227 7.6e-42 173.7 104 82.7
MSTRG.14457 Avicennia marina HOM05D004421 ORTHO05D005227 9.9e-42 173.3 101 83.2
Manes.13G067100 Manihot esculenta HOM05D004421 ORTHO05D005227 9.9e-42 173.3 104 80.8
Nitab4.5_0000138g0020 Nicotiana tabacum HOM05D004421 ORTHO05D005227 9.9e-42 173.3 104 77.9
Nitab4.5_0005588g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 1.3e-41 172.9 104 77.9
PSO017G4413 Papaver somniferum HOM05D004421 ORTHO05D005227 1.3e-41 172.9 98 82.7
PSO675G5827 Papaver somniferum HOM05D004421 ORTHO05D005227 1.3e-41 172.9 98 82.7
Peaxi162Scf00047g00850 Petunia axillaris HOM05D004421 ORTHO05D005227 1.3e-41 172.9 106 80.2
Peaxi162Scf00149g00049 Petunia axillaris HOM05D004421 ORTHO05D005227 1.3e-41 172.9 104 79.8
Potri.014G157400 Populus trichocarpa HOM05D004421 ORTHO05D005227 1.3e-41 172.9 104 80.8
Nitab4.5_0007533g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 1.7e-41 172.6 104 78.8
Sabra02G0172700 Salix brachista HOM05D004421 ORTHO05D005227 1.7e-41 172.6 105 79.0
PGSC0003DMG400010437 Solanum tuberosum HOM05D004421 ORTHO05D005227 1.7e-41 172.6 104 79.8
TWI36G1565 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 1.7e-41 172.6 100 84.0
Cpa.g.sc12.255 Carica papaya HOM05D004421 ORTHO05D005227 2.2e-41 172.2 102 81.4
SalBow3G0779 Salvia bowleyana HOM05D004421 ORTHO05D005227 2.9e-41 171.8 103 80.6
Solyc02g068770.4 Solanum lycopersicum HOM05D004421 ORTHO05D005227 2.9e-41 171.8 101 82.2
Aqoxy6G00590 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 3.8e-41 171.4 104 76.9
Sopen02g017940 Solanum pennellii HOM05D004421 ORTHO05D005227 6.4e-41 170.6 101 81.2
MSTRG.12990 Avicennia marina HOM05D004421 ORTHO05D005227 1.1e-40 169.9 101 81.2
CAN.G358.77 Capsicum annuum HOM05D004421 ORTHO05D005227 1.1e-40 169.9 104 78.8
CDE04G3645 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 1.4e-40 169.5 104 78.8
Gorai.005G241500 Gossypium raimondii HOM05D004421 ORTHO05D005227 1.4e-40 169.5 103 80.6
Oeu054302.1 Olea europaea HOM05D004421 ORTHO05D005227 1.4e-40 169.5 100 82.0
Thecc.07G030200 Theobroma cacao HOM05D004421 ORTHO05D005227 1.4e-40 169.5 103 79.6
TWI79G1637 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 1.4e-40 169.5 100 83.0
Duzib128G1691 Durio zibethinus HOM05D004421 ORTHO05D005227 2.4e-40 168.7 103 80.6
unitig_748.g8294 Utricularia gibba HOM05D004421 ORTHO05D005227 2.4e-40 168.7 99 80.8
Nitab4.5_0001288g0200 Nicotiana tabacum HOM05D004421 ORTHO05D005227 3.2e-40 168.3 104 76.9
Sc12g0002130 Simmondsia chinensis HOM05D004421 ORTHO05D005227 3.2e-40 168.3 104 78.8
Lsat_1_v5_gn_5_123820 Lactuca sativa HOM05D004421 ORTHO05D005227 4.1e-40 167.9 99 78.8
Rhsim06G0166700 Rhododendron simsii HOM05D004421 ORTHO05D005227 5.4e-40 167.5 104 76.9
Ah.12g058680 Amaranthus hybridus HOM05D004421 ORTHO05D005227 9.2e-40 166.8 101 82.2
Gohir.A03G192600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 9.2e-40 166.8 103 79.6
unitig_32.g10858 Utricularia gibba HOM05D004421 ORTHO05D005227 9.2e-40 166.8 99 80.8
MELO3C019309.2 Cucumis melo HOM05D004421 ORTHO05D005227 1.2e-39 166.4 94 88.3
CDE06G2669 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 1.6e-39 166.0 104 76.9
Eucgr.B01013 Eucalyptus grandis HOM05D004421 ORTHO05D005227 4.6e-39 164.5 95 84.2
ATR0665G259 Amborella trichopoda HOM05D004421 ORTHO05D005227 6.0e-39 164.1 101 78.2
Gohir.D02G213600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 7.8e-39 163.7 103 78.6
Atru.chr2.3508 Acer truncatum HOM05D004421 ORTHO05D005227 3.0e-38 161.8 103 75.7
SGA_v2.0_scaffold392G50685 Striga asiatica HOM05D004421 ORTHO05D005227 1.9e-37 159.1 106 74.5
SHI33915 Sapria himalayana HOM05D004421 ORTHO05D005227 2.5e-37 158.7 98 77.6
TPR.G40166 Trifolium pratense HOM05D004421 ORTHO05D005227 2.5e-37 158.7 87 89.7
Cc05_g14180 Coffea canephora HOM05D004421 ORTHO05D005227 3.3e-37 158.3 102 75.5
SGA_v2.0_scaffold363G49953 Striga asiatica HOM05D004421 ORTHO05D005227 7.3e-37 157.1 104 76.9
SGA_v2.0_scaffold159G37698 Striga asiatica HOM05D004421 ORTHO05D005227 1.6e-36 156.0 99 76.8
COL.COLO4_09709 Corchorus olitorius HOM05D004421 ORTHO05D005227 6.2e-36 154.1 102 73.5
Hund24697 Selenicereus undatus HOM05D004421 ORTHO05D005227 8.1e-36 153.7 102 75.5
Cc05_g02530 Coffea canephora HOM05D004421 ORTHO05D005227 3.1e-35 151.8 101 72.3
THA.LOC104811627 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 3.1e-35 151.8 103 72.8
MBI16_g23852_MAGBIO Magnolia biondii HOM05D004421 ORTHO05D005227 2.0e-34 149.1 104 67.3
THA.LOC104813431 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 2.0e-34 149.1 103 72.8
BolC2t07739H Brassica oleracea HOM05D004421 ORTHO05D005227 1.4e-32 142.9 105 67.6
BraA02t06048Z Brassica rapa HOM05D004421 ORTHO05D005227 2.4e-32 142.1 106 67.0
Thhalv10015072m.g Eutrema salsugineum HOM05D004421 ORTHO05D005227 3.2e-32 141.7 104 67.3
BcaB05g22185 Brassica carinata HOM05D004421 ORTHO05D005227 4.2e-32 141.4 105 66.7
C02p16370 Brassica napus HOM05D004421 ORTHO05D005227 4.2e-32 141.4 105 66.7
A02p09830 Brassica napus HOM05D004421 ORTHO05D005227 7.1e-32 140.6 106 66.0
BcaB08g35879 Brassica carinata HOM05D004421 ORTHO05D005227 9.3e-32 140.2 104 65.4
BcaC04g20265 Brassica carinata HOM05D004421 ORTHO05D005227 1.2e-31 139.8 105 65.7
BraA10t43337Z Brassica rapa HOM05D004421 ORTHO05D005227 1.2e-31 139.8 105 65.7
Aa31LG3G11160 Aethionema arabicum HOM05D004421 ORTHO05D005227 1.6e-31 139.4 98 68.4
HPP92_026149 Vanilla planifolia HOM05D004421 ORTHO05D005227 1.6e-31 139.4 105 62.9
Sp6g17090 Schrenkiella parvula HOM05D004421 ORTHO05D005227 3.5e-31 138.3 105 64.8
Lj2g0010759 Lotus japonicus HOM05D004421 ORTHO05D005227 6.0e-31 137.5 104 68.3
CSS0048822 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 7.8e-31 137.1 101 69.3
Carub.0008s1546 Capsella rubella HOM05D004421 ORTHO05D005227 7.8e-31 137.1 105 63.8
Zm00001eb211500 Zea mays HOM05D004421 ORTHO05D005227 7.8e-31 137.1 102 66.7
CARHR268500 Cardamine hirsuta HOM05D004421 ORTHO05D005227 1.3e-30 136.3 105 64.8
AL8G30670 Arabidopsis lyrata HOM05D004421 ORTHO05D005227 1.7e-30 136.0 105 64.8
AT5G55140 Arabidopsis thaliana HOM05D004421 ORTHO05D005227 2.3e-30 135.6 105 63.8
A05p12050 Brassica napus HOM05D004421 ORTHO05D005227 3.0e-30 135.2 106 65.1
A10p12420 Brassica napus HOM05D004421 ORTHO05D005227 3.0e-30 135.2 106 65.1
C09p45840 Brassica napus HOM05D004421 ORTHO05D005227 3.0e-30 135.2 106 65.1
BolC9t57441H Brassica oleracea HOM05D004421 ORTHO05D005227 3.0e-30 135.2 106 65.1
Os08g0110100 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 3.9e-30 134.8 106 62.3
vmacro12170 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 8.1e-28 127.1 88 73.9
Dinv22240 Davidia involucrata HOM05D004421 ORTHO05D005227 9.0e-27 123.6 66 86.4
SEGI_06591 Sequoiadendron giganteum HOM05D004421 ORTHO05D005227 3.8e-25 118.2 98 58.2
Eucgr.B01894 Eucalyptus grandis HOM05D004421 ORTHO05D005227 4.9e-25 117.9 66 83.3
BcaC03g14260 Brassica carinata HOM05D004421 ORTHO05D005227 1.9e-24 115.9 81 70.4
Hma1.2p1_2381F.1_g321010 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 2.7e-23 112.1 88 64.8
BraA03t14310Z Brassica rapa HOM05D004421 ORTHO05D005227 1.0e-22 110.2 96 61.5
BcaC03g14258 Brassica carinata HOM05D004421 ORTHO05D005227 1.3e-22 109.8 89 64.0
A08p21130 Brassica napus HOM05D004421 ORTHO05D005227 2.3e-22 109.0 96 61.5
FvH4_6g04610 Fragaria vesca HOM05D004421 ORTHO05D005227 2.3e-22 109.0 75 77.3
Mapoly0058s0042 Marchantia polymorpha HOM05D004421 ORTHO05D005227 1.9e-21 105.9 89 61.8
Os06g0339800 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 2.5e-21 105.5 100 57.0
AagrBONN_evm.TU.Sc2ySwM_344.5034 Anthoceros agrestis HOM05D004421 ORTHO05D005227 2.8e-20 102.1 88 60.2
MD09G1112900 Malus domestica HOM05D004421 ORTHO05D005227 5.3e-19 97.8 54 85.2
Migut.H01800 Erythranthe guttata HOM05D004421 ORTHO05D005227 3.4e-18 95.1 56 78.6
Potri.010G076275 Populus trichocarpa HOM05D004421 ORTHO05D005227 3.4e-18 95.1 79 63.3
Pp3c26_2200 Physcomitrium patens HOM05D004421 ORTHO05D005227 1.7e-17 92.8 89 56.2
Manes.12G070801 Manihot esculenta HOM05D004421 ORTHO05D005227 1.4e-16 89.7 54 75.9
HanXRQChr16g0506671 Helianthus annuus HOM05D004421 ORTHO05D005227 5.5e-16 87.8 48 83.3
GSVIVG01030492001 Vitis vinifera HOM05D004421 ORTHO05D005227 5.5e-16 87.8 48 87.5
RcHm_v2.0_Chr4g0419171 Rosa chinensis HOM05D004421 ORTHO05D005227 5.1e-14 81.3 103 48.5
SMO172G0081 Selaginella moellendorffii HOM05D004421 ORTHO05D005227 6.2e-12 74.3 86 47.7
Nn2g15167 Nelumbo nucifera HOM05D004421 ORTHO05D005227 8.4e-09 63.9 37 81.1
Cre05.g234659 Chlamydomonas reinhardtii HOM05D004421 ORTHO05D005227 7.1e-08 60.8 83 41.0


User provided reference genes

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