Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g098995 Medicago truncatula HOM05D006267 ORTHO05D007490 0.0e+00 1240.3 629 100.0
TPR.G12935 Trifolium pratense HOM05D006267 ORTHO05D007490 6.6e-295 1016.9 630 82.5
Psat7g029320 Pisum sativum HOM05D006267 ORTHO05D007490 2.5e-286 988.4 635 81.7
Ca_10954_v3 Cicer arietinum L. HOM05D006267 ORTHO05D007490 3.1e-276 954.9 630 79.0
Glyma.08G018700 Glycine max HOM05D006267 ORTHO05D007490 3.8e-242 841.6 630 70.0
Glyma.05G212200 Glycine max HOM05D006267 ORTHO05D007490 7.2e-241 837.4 630 69.0
Lj4g0011337 Lotus japonicus HOM05D006267 ORTHO05D007490 1.3e-239 833.2 632 70.9
Phvul.002G293500 Phaseolus vulgaris HOM05D006267 ORTHO05D007490 1.7e-229 799.7 632 67.6
VMungo0251G1048 Vigna mungo HOM05D006267 ORTHO05D007490 2.8e-229 798.9 632 67.4
arahy.Tifrunner.gnm1.ann1.SWZD22 Arachis hypogaea HOM05D006267 ORTHO05D007490 1.1e-209 733.8 615 65.0
arahy.Tifrunner.gnm1.ann1.BRCM5A Arachis hypogaea HOM05D006267 ORTHO05D007490 7.2e-209 731.1 615 64.9
Lalb_Chr05g0224451 Lupinus albus HOM05D006267 ORTHO05D007490 5.9e-203 711.4 621 62.6
Lalb_Chr09g0333071 Lupinus albus HOM05D006267 ORTHO05D007490 1.8e-199 699.9 621 61.7
VMungo1215G1298 Vigna mungo HOM05D006267 ORTHO05D007490 1.7e-149 533.9 628 51.9
Phvul.002G160500 Phaseolus vulgaris HOM05D006267 ORTHO05D007490 7.4e-145 518.5 614 52.0
QL02p033236 Quercus lobata HOM05D006267 ORTHO05D007490 6.9e-135 485.3 629 45.5
Cfa012253 Carpinus fangiana HOM05D006267 ORTHO05D007490 1.4e-132 477.6 645 45.0
Duzib084G0031 Durio zibethinus HOM05D006267 ORTHO05D007490 2.3e-122 443.7 591 46.0
Thecc.03G287200 Theobroma cacao HOM05D006267 ORTHO05D007490 3.3e-121 439.9 613 44.7
Atru.chr9.2105 Acer truncatum HOM05D006267 ORTHO05D007490 3.4e-118 429.9 602 44.5
COL.COLO4_08352 Corchorus olitorius HOM05D006267 ORTHO05D007490 1.1e-116 424.9 632 41.9
Prupe.5G107200 Prunus persica HOM05D006267 ORTHO05D007490 1.4e-116 424.5 574 45.6
GSVIVG01019426001 Vitis vinifera HOM05D006267 ORTHO05D007490 2.5e-116 423.7 621 43.3
FvH4_5g03290 Fragaria vesca HOM05D006267 ORTHO05D007490 4.2e-116 422.9 630 43.3
RcHm_v2.0_Chr7g0196491 Rosa chinensis HOM05D006267 ORTHO05D007490 4.2e-116 422.9 629 42.6
MD14G1113000 Malus domestica HOM05D006267 ORTHO05D007490 1.2e-115 421.4 613 42.9
MD06G1092500 Malus domestica HOM05D006267 ORTHO05D007490 1.4e-114 417.9 612 43.3
FAN18G3550 Fragaria x ananassa HOM05D006267 ORTHO05D007490 4.4e-113 412.9 628 43.0
FAN04G2714 Fragaria x ananassa HOM05D006267 ORTHO05D007490 5.3e-111 406.0 634 42.4
FAN04G3088 Fragaria x ananassa HOM05D006267 ORTHO05D007490 3.4e-110 403.3 658 41.5
Dinv37589 Davidia involucrata HOM05D006267 ORTHO05D007490 1.0e-109 401.7 601 42.9
Dinv38895 Davidia involucrata HOM05D006267 ORTHO05D007490 1.1e-108 398.3 612 42.2
FAN08G1104 Fragaria x ananassa HOM05D006267 ORTHO05D007490 4.2e-108 396.4 652 41.7
FAN13G1859 Fragaria x ananassa HOM05D006267 ORTHO05D007490 1.2e-107 394.8 654 41.4
Ciclev10019222m.g Citrus clementina HOM05D006267 ORTHO05D007490 1.8e-106 391.0 628 41.6
ClCG07G007820 Citrullus lanatus HOM05D006267 ORTHO05D007490 3.0e-106 390.2 605 42.8
Gorai.007G024600 Gossypium raimondii HOM05D006267 ORTHO05D007490 3.9e-106 389.8 595 42.4
Gohir.D11G022800 Gossypium hirsutum HOM05D006267 ORTHO05D007490 8.8e-106 388.7 595 42.2
Manes.02G016400 Manihot esculenta HOM05D006267 ORTHO05D007490 2.6e-105 387.1 557 43.4
Gohir.A11G023100 Gossypium hirsutum HOM05D006267 ORTHO05D007490 9.7e-105 385.2 595 42.2
FAN13G1356 Fragaria x ananassa HOM05D006267 ORTHO05D007490 8.2e-104 382.1 654 40.8
Potri.003G133100 Populus trichocarpa HOM05D006267 ORTHO05D007490 2.4e-103 380.6 593 42.0
CANSAT21G1484 Cannabis sativa HOM05D006267 ORTHO05D007490 3.1e-103 380.2 627 41.8
CiPaw.12G088700 Carya illinoinensis HOM05D006267 ORTHO05D007490 9.1e-103 378.6 531 43.3
CsaV3_4G006140 Cucumis sativus L. HOM05D006267 ORTHO05D007490 2.9e-101 373.6 615 42.9
Potri.001G098500 Populus trichocarpa HOM05D006267 ORTHO05D007490 6.5e-101 372.5 618 40.6
Manes.01G056900 Manihot esculenta HOM05D006267 ORTHO05D007490 3.6e-99 366.7 632 38.6
CSS0029775 Camellia sinensis var. sinensis HOM05D006267 ORTHO05D007490 3.0e-98 363.6 629 39.9
Duzib205G1874 Durio zibethinus HOM05D006267 ORTHO05D007490 4.0e-98 363.2 592 40.0
Sed0011828 Sechium edule HOM05D006267 ORTHO05D007490 4.4e-97 359.8 608 40.6
Cpa.g.sc201.8 Carica papaya HOM05D006267 ORTHO05D007490 5.9e-94 349.4 577 41.6
Actinidia33723 Actinidia chinensis HOM05D006267 ORTHO05D007490 7.7e-94 349.0 630 38.9
Sabra03G0095400 Salix brachista HOM05D006267 ORTHO05D007490 1.3e-93 348.2 571 40.1
Hma1.2p1_0216F.1_g091140 Hydrangea macrophylla HOM05D006267 ORTHO05D007490 5.5e-92 342.8 576 39.4
MELO3C016335.2 Cucumis melo HOM05D006267 ORTHO05D007490 3.4e-89 333.6 613 40.9
Actinidia27358 Actinidia chinensis HOM05D006267 ORTHO05D007490 9.8e-89 332.0 633 37.0
TAR629G1352 Trochodendron aralioides HOM05D006267 ORTHO05D007490 1.1e-87 328.6 632 37.0
Sabra01G0073800 Salix brachista HOM05D006267 ORTHO05D007490 1.6e-86 324.7 635 36.9
Lj2A177G41 Lonicera japonica HOM05D006267 ORTHO05D007490 2.7e-86 323.9 617 38.2
AUR62010761 Chenopodium quinoa HOM05D006267 ORTHO05D007490 5.9e-86 322.8 613 38.0
TAR375G0718 Trochodendron aralioides HOM05D006267 ORTHO05D007490 4.7e-83 313.2 623 37.9
Duzib068G0865 Durio zibethinus HOM05D006267 ORTHO05D007490 1.2e-81 308.5 624 37.7
Nn1g01698 Nelumbo nucifera HOM05D006267 ORTHO05D007490 1.2e-81 308.5 648 36.3
Haze_08744 Corylus avellana HOM05D006267 ORTHO05D007490 5.7e-81 306.2 642 34.1
Hund14261 Selenicereus undatus HOM05D006267 ORTHO05D007490 5.7e-81 306.2 641 36.2
TAR374G1011 Trochodendron aralioides HOM05D006267 ORTHO05D007490 5.7e-81 306.2 702 34.3
EL10Ac5g12844 Beta vulgaris HOM05D006267 ORTHO05D007490 2.8e-80 303.9 610 37.5
AUR62019762 Chenopodium quinoa HOM05D006267 ORTHO05D007490 1.1e-79 302.0 601 37.4
TWI60G1512 Tripterygium wilfordii HOM05D006267 ORTHO05D007490 1.9e-76 291.2 445 42.7
Sed0002932 Sechium edule HOM05D006267 ORTHO05D007490 2.5e-76 290.8 522 39.3
Cc08_g15330 Coffea canephora HOM05D006267 ORTHO05D007490 7.3e-76 289.3 534 36.7
Sc01g0009910 Simmondsia chinensis HOM05D006267 ORTHO05D007490 1.4e-74 285.0 622 34.7
PGR042G1146 Punica granatum HOM05D006267 ORTHO05D007490 6.4e-72 276.2 608 35.0
Eucgr.E00783 Eucalyptus grandis HOM05D006267 ORTHO05D007490 8.3e-72 275.8 534 37.1
TWI81G0535 Tripterygium wilfordii HOM05D006267 ORTHO05D007490 1.7e-69 268.1 438 38.4
TWI15G0222 Tripterygium wilfordii HOM05D006267 ORTHO05D007490 2.5e-68 264.2 445 40.2
vmacro13979 Vaccinium macrocarpon HOM05D006267 ORTHO05D007490 8.9e-66 255.8 629 32.3
Hund11430 Selenicereus undatus HOM05D006267 ORTHO05D007490 1.5e-65 255.0 692 33.2
THA.LOC104817764 Tarenaya hassleriana HOM05D006267 ORTHO05D007490 2.2e-64 251.1 499 37.5
Rhsim07G0086900 Rhododendron simsii HOM05D006267 ORTHO05D007490 6.4e-64 249.6 585 33.7
DCAR_005575 Daucus carota HOM05D006267 ORTHO05D007490 8.3e-64 249.2 581 33.4
Aqoxy7G00177 Aquilegia oxysepala HOM05D006267 ORTHO05D007490 4.7e-59 233.4 623 31.5
Carub.0002s0075 Capsella rubella HOM05D006267 ORTHO05D007490 8.9e-58 229.2 519 34.7
Nitab4.5_0002381g0070 Nicotiana tabacum HOM05D006267 ORTHO05D007490 4.4e-57 226.9 573 33.2
BcaB07g31428 Brassica carinata HOM05D006267 ORTHO05D007490 1.1e-55 222.2 575 34.3
CARHR046900 Cardamine hirsuta HOM05D006267 ORTHO05D007490 7.1e-55 219.5 539 33.8
MSTRG.1836 Avicennia marina HOM05D006267 ORTHO05D007490 1.2e-54 218.8 586 32.1
Lsat_1_v5_gn_3_11600 Lactuca sativa HOM05D006267 ORTHO05D007490 2.1e-54 218.0 598 33.4
Thhalv10023327m.g Eutrema salsugineum HOM05D006267 ORTHO05D007490 6.0e-54 216.5 531 33.9
AL2G11010 Arabidopsis lyrata HOM05D006267 ORTHO05D007490 3.0e-53 214.2 510 33.9
Peaxi162Scf00117g01519 Petunia axillaris HOM05D006267 ORTHO05D007490 5.6e-52 209.9 581 31.8
Sp2g00660 Schrenkiella parvula HOM05D006267 ORTHO05D007490 7.3e-52 209.5 510 33.9
Migut.E01211 Erythranthe guttata HOM05D006267 ORTHO05D007490 1.2e-51 208.8 577 33.4
AT1G64050 Arabidopsis thaliana HOM05D006267 ORTHO05D007490 2.1e-51 208.0 478 34.9
SGA_v2.0_scaffold111G31467 Striga asiatica HOM05D006267 ORTHO05D007490 1.1e-50 205.7 544 33.3
HanXRQChr17g0533871 Helianthus annuus HOM05D006267 ORTHO05D007490 5.2e-50 203.4 602 31.1
Aa31LG2G1120 Aethionema arabicum HOM05D006267 ORTHO05D007490 6.8e-50 203.0 477 34.8
C09p18210 Brassica napus HOM05D006267 ORTHO05D007490 6.8e-50 203.0 466 33.7
MBI04_g06288_MAGBIO Magnolia biondii HOM05D006267 ORTHO05D007490 8.9e-50 202.6 408 36.0
A09p15090 Brassica napus HOM05D006267 ORTHO05D007490 1.5e-49 201.8 535 32.1
BolC9t54717H Brassica oleracea HOM05D006267 ORTHO05D007490 1.5e-49 201.8 466 33.7
ECA246G3109 Erigeron canadensis HOM05D006267 ORTHO05D007490 1.5e-49 201.8 584 31.8
BraA09t37153Z Brassica rapa HOM05D006267 ORTHO05D007490 2.0e-49 201.4 535 32.1
BcaC04g22526 Brassica carinata HOM05D006267 ORTHO05D007490 5.8e-49 199.9 446 34.5
MSTRG.13864 Avicennia marina HOM05D006267 ORTHO05D007490 3.8e-48 197.2 526 34.4
Nitab4.5_0003366g0020 Nicotiana tabacum HOM05D006267 ORTHO05D007490 1.4e-47 195.3 585 30.8
Sopen12g028680 Solanum pennellii HOM05D006267 ORTHO05D007490 1.9e-47 194.9 593 31.0
Solyc12g056170.2 Solanum lycopersicum HOM05D006267 ORTHO05D007490 7.1e-47 193.0 593 30.7
PGSC0003DMG400004984 Solanum tuberosum HOM05D006267 ORTHO05D007490 5.8e-41 173.3 644 29.2
CiPaw.11G129100 Carya illinoinensis HOM05D006267 ORTHO05D007490 1.2e-38 165.6 221 42.5
Psat0s1200g0040 Pisum sativum HOM05D005109 ORTHO05D006084 2.1e-38 164.9 120 73.3
PSO063G3925 Papaver somniferum HOM05D006267 ORTHO05D007490 3.5e-38 164.1 623 29.1
PSO170G4156 Papaver somniferum HOM05D006267 ORTHO05D007490 1.4e-34 152.1 301 35.2
SHI07081 Sapria himalayana HOM05D006267 ORTHO05D007490 6.9e-34 149.8 483 30.6
HPP92_003940 Vanilla planifolia HOM05D006267 ORTHO05D007490 1.8e-21 108.6 328 29.0
unitig_52.g17233 Utricularia gibba HOM05D006267 ORTHO05D007490 1.1e-20 105.9 244 32.4
Psat5g050320 Pisum sativum HOM05D004672 ORTHO05D005732 5.8e-17 93.6 78 65.4
Psat6g214080 Pisum sativum HOM05D001701 ORTHO05D007490 5.8e-17 93.6 74 67.6
HanXRQChr06g0166231 Helianthus annuus HOM05D006267 ORTHO05D007490 3.8e-16 90.9 173 36.4
CiPaw.11G129200 Carya illinoinensis HOM05D006267 ORTHO05D007490 1.3e-08 65.9 81 46.9
HPP92_023960 Vanilla planifolia HOM05D006267 ORTHO05D007490 3.2e-07 61.2 154 35.1


User provided reference genes

Program Settings