Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g098970 Medicago truncatula HOM05D000470 ORTHO05D000348 2.0e-32 141.7 68 100.0
Lj3g0021539 Lotus japonicus HOM05D000470 ORTHO05D000348 4.8e-18 94.0 67 67.2
Glyma.15G002700 Glycine max HOM05D000470 ORTHO05D000348 1.8e-17 92.0 63 71.4
Phvul.005G183100 Phaseolus vulgaris HOM05D000470 ORTHO05D000348 1.8e-17 92.0 63 71.4
VMungo1080G1689 Vigna mungo HOM05D000470 ORTHO05D000348 1.8e-17 92.0 63 71.4
Psat5g308400 Pisum sativum HOM05D000470 ORTHO05D000348 3.1e-17 91.3 67 64.2
Medtr2g105270 Medicago truncatula HOM05D000470 ORTHO05D000348 1.6e-16 89.0 63 69.8
arahy.Tifrunner.gnm1.ann1.XNKC70 Arachis hypogaea HOM05D000470 ORTHO05D000348 2.0e-16 88.6 64 68.8
Ca_01008_v3 Cicer arietinum L. HOM05D000470 ORTHO05D000348 2.0e-16 88.6 67 67.2
Lalb_Chr24g0392811 Lupinus albus HOM05D000470 ORTHO05D000348 2.0e-16 88.6 67 64.2
Glyma.13G370900 Glycine max HOM05D000470 ORTHO05D000348 2.7e-16 88.2 63 69.8
CANSAT56G3718 Cannabis sativa HOM05D000470 ORTHO05D000348 5.9e-16 87.0 67 62.7
MELO3C026733.2 Cucumis melo HOM05D000470 ORTHO05D000348 5.9e-16 87.0 67 62.7
CsaV3_3G032740 Cucumis sativus L. HOM05D000470 ORTHO05D000348 5.9e-16 87.0 67 62.7
QL05p036356 Quercus lobata HOM05D000470 ORTHO05D000348 5.9e-16 87.0 63 66.7
MD09G1225700 Malus domestica HOM05D000470 ORTHO05D000348 7.7e-16 86.7 63 66.7
ClCG10G012880 Citrullus lanatus HOM05D000470 ORTHO05D000348 1.0e-15 86.3 67 62.7
FvH4_6g28490 Fragaria vesca HOM05D000470 ORTHO05D000348 1.0e-15 86.3 67 62.7
FAN02G3900 Fragaria x ananassa HOM05D000470 ORTHO05D000348 1.0e-15 86.3 67 62.7
FAN05G5206 Fragaria x ananassa HOM05D000470 ORTHO05D000348 1.0e-15 86.3 67 62.7
FAN14G5196 Fragaria x ananassa HOM05D000470 ORTHO05D000348 1.0e-15 86.3 67 62.7
TAR383G0368 Trochodendron aralioides HOM05D000470 ORTHO05D000348 1.3e-15 85.9 64 65.6
CiPaw.02G162700 Carya illinoinensis HOM05D000470 ORTHO05D000348 1.7e-15 85.5 67 59.7
MD17G1224500 Malus domestica HOM05D000470 ORTHO05D000348 1.7e-15 85.5 63 65.1
Thecc.06G043600 Theobroma cacao HOM05D000470 ORTHO05D000348 2.2e-15 85.1 67 59.7
Ciclev10025612m.g Citrus clementina HOM05D000470 ORTHO05D000348 2.9e-15 84.7 63 66.7
Sed0019886 Sechium edule HOM05D000470 ORTHO05D000348 2.9e-15 84.7 63 65.1
THA.LOC104813589 Tarenaya hassleriana HOM05D000470 ORTHO05D000348 3.8e-15 84.3 67 61.2
Atru.chr1.2787 Acer truncatum HOM05D000470 ORTHO05D000348 5.0e-15 84.0 67 59.7
Cfa001872 Carpinus fangiana HOM05D000470 ORTHO05D000348 5.0e-15 84.0 67 59.7
Haze_16676 Corylus avellana HOM05D000470 ORTHO05D000348 5.0e-15 84.0 67 59.7
Sed0024798 Sechium edule HOM05D000470 ORTHO05D000348 5.0e-15 84.0 63 65.1
Carub.0001s1581 Capsella rubella HOM05D000470 ORTHO05D000348 6.5e-15 83.6 67 61.2
Prupe.3G100200 Prunus persica HOM05D000470 ORTHO05D000348 6.5e-15 83.6 63 61.9
Lj5A81T84 Lonicera japonica HOM05D000470 ORTHO05D000348 8.5e-15 83.2 68 61.8
RcHm_v2.0_Chr2g0132741 Rosa chinensis HOM05D000470 ORTHO05D000348 8.5e-15 83.2 63 63.5
Aa31LG7G590 Aethionema arabicum HOM05D000470 ORTHO05D000348 1.1e-14 82.8 63 63.5
Aqoxy7G03386 Aquilegia oxysepala HOM05D000470 ORTHO05D000348 1.1e-14 82.8 64 64.1
Lalb_Chr22g0349401 Lupinus albus HOM05D000470 ORTHO05D000348 1.1e-14 82.8 64 62.5
SGA_v2.0_scaffold37G14691 Striga asiatica HOM05D000470 ORTHO05D000348 1.1e-14 82.8 67 62.7
SGA_v2.0_scaffold5G02791 Striga asiatica HOM05D000470 ORTHO05D000348 1.1e-14 82.8 67 62.7
AL1G28170 Arabidopsis lyrata HOM05D000470 ORTHO05D000348 1.5e-14 82.4 67 59.7
AT1G16010 Arabidopsis thaliana HOM05D000470 ORTHO05D000348 1.5e-14 82.4 67 59.7
CARHR016500 Cardamine hirsuta HOM05D000470 ORTHO05D000348 1.5e-14 82.4 67 59.7
Duzib192G0862 Durio zibethinus HOM05D000470 ORTHO05D000348 1.5e-14 82.4 67 58.2
Thhalv10007638m.g Eutrema salsugineum HOM05D000470 ORTHO05D000348 1.5e-14 82.4 67 59.7
PSO063G0091 Papaver somniferum HOM05D000470 ORTHO05D000348 1.5e-14 82.4 64 64.1
PSO782G0897 Papaver somniferum HOM05D000470 ORTHO05D000348 1.5e-14 82.4 64 64.1
Sp1g14320 Schrenkiella parvula HOM05D000470 ORTHO05D000348 1.5e-14 82.4 67 59.7
TAR626G1352 Trochodendron aralioides HOM05D000470 ORTHO05D000348 1.5e-14 82.4 64 64.1
GSVIVG01015984001 Vitis vinifera HOM05D000470 ORTHO05D000348 1.9e-14 82.0 68 58.8
GSVIVG01015987001 Vitis vinifera HOM05D000470 ORTHO05D000348 1.9e-14 82.0 68 58.8
Gohir.A06G114600 Gossypium hirsutum HOM05D000470 ORTHO05D000348 2.5e-14 81.6 67 58.2
Nitab4.5_0000886g0030 Nicotiana tabacum HOM05D000470 ORTHO05D000348 2.5e-14 81.6 68 60.3
Nitab4.5_0008962g0020 Nicotiana tabacum HOM05D000470 ORTHO05D000348 2.5e-14 81.6 68 60.3
Os06g0650800 Oryza sativa ssp. japonica HOM05D000470 ORTHO05D000348 2.5e-14 81.6 64 64.1
Sp5g34840 Schrenkiella parvula HOM05D000470 ORTHO05D000348 2.5e-14 81.6 67 59.7
CAN.G1932.5 Capsicum annuum HOM05D000470 ORTHO05D000348 3.2e-14 81.3 68 60.3
Migut.I00686 Erythranthe guttata HOM05D000470 ORTHO05D000348 3.2e-14 81.3 68 58.8
Peaxi162Scf00207g00428 Petunia axillaris HOM05D000470 ORTHO05D000348 3.2e-14 81.3 68 60.3
Solyc06g068490.3 Solanum lycopersicum HOM05D000470 ORTHO05D000348 3.2e-14 81.3 68 60.3
Sopen06g025740 Solanum pennellii HOM05D000470 ORTHO05D000348 3.2e-14 81.3 68 60.3
PGSC0003DMG401028489 Solanum tuberosum HOM05D000470 ORTHO05D000348 3.2e-14 81.3 68 60.3
Dinv03574 Davidia involucrata HOM05D000470 ORTHO05D000348 5.5e-14 80.5 64 62.5
Thhalv10018562m.g Eutrema salsugineum HOM05D000470 ORTHO05D000348 5.5e-14 80.5 67 58.2
Gohir.D06G119200 Gossypium hirsutum HOM05D000470 ORTHO05D000348 5.5e-14 80.5 67 56.7
Gorai.010G136800 Gossypium raimondii HOM05D000470 ORTHO05D000348 5.5e-14 80.5 67 56.7
Nn8g39920 Nelumbo nucifera HOM05D000470 ORTHO05D000348 5.5e-14 80.5 64 62.5
Sc12g0008110 Simmondsia chinensis HOM05D000470 ORTHO05D000348 5.5e-14 80.5 64 64.1
CDE02G3884 Ceratophyllum demersum HOM05D000470 ORTHO05D000348 7.2e-14 80.1 64 62.5
CDE05G1469 Ceratophyllum demersum HOM05D000470 ORTHO05D000348 9.4e-14 79.7 64 62.5
COL.COLO4_26746 Corchorus olitorius HOM05D000470 ORTHO05D000348 9.4e-14 79.7 67 56.7
CARHR073570 Cardamine hirsuta HOM05D000470 ORTHO05D000348 2.1e-13 78.6 67 58.2
PGR031G1635 Punica granatum HOM05D000470 ORTHO05D000348 2.7e-13 78.2 64 64.1
Sabra03G0134000 Salix brachista HOM05D000470 ORTHO05D000348 2.7e-13 78.2 64 62.5
TWI75G0554 Tripterygium wilfordii HOM05D000470 ORTHO05D000348 2.7e-13 78.2 68 60.3
BcaB02g06651 Brassica carinata HOM05D000470 ORTHO05D000348 3.6e-13 77.8 68 58.8
CSS0031277 Camellia sinensis var. sinensis HOM05D000470 ORTHO05D000348 3.6e-13 77.8 64 59.4
Cc04_g05200 Coffea canephora HOM05D000470 ORTHO05D000348 3.6e-13 77.8 64 62.5
Oeu051566.1 Olea europaea HOM05D000470 ORTHO05D000348 4.7e-13 77.4 64 60.9
TAR636G1903 Trochodendron aralioides HOM05D000470 ORTHO05D000348 4.7e-13 77.4 64 60.9
arahy.Tifrunner.gnm1.ann1.UQ7PKN Arachis hypogaea HOM05D000470 ORTHO05D000348 6.1e-13 77.0 67 56.7
Duzib235G0162 Durio zibethinus HOM05D000470 ORTHO05D000348 6.1e-13 77.0 60 60.0
Eucgr.J03120 Eucalyptus grandis HOM05D000470 ORTHO05D000348 6.1e-13 77.0 64 59.4
Sabra01G0029700 Salix brachista HOM05D000470 ORTHO05D000348 6.1e-13 77.0 64 60.9
Manes.04G101500 Manihot esculenta HOM05D000470 ORTHO05D000348 8.0e-13 76.6 68 57.4
Potri.001G043200 Populus trichocarpa HOM05D000470 ORTHO05D000348 8.0e-13 76.6 64 60.9
Rhsim12G0186700 Rhododendron simsii HOM05D000470 ORTHO05D000348 8.0e-13 76.6 64 62.5
MBI14_g09100_MAGBIO Magnolia biondii HOM05D000470 ORTHO05D000348 1.0e-12 76.3 64 60.9
BcaC05g25619 Brassica carinata HOM05D000470 ORTHO05D000348 1.4e-12 75.9 64 60.9
A06p12040 Brassica napus HOM05D000470 ORTHO05D000348 1.4e-12 75.9 64 60.9
C05p14210 Brassica napus HOM05D000470 ORTHO05D000348 1.4e-12 75.9 64 60.9
BolC5t30152H Brassica oleracea HOM05D000470 ORTHO05D000348 1.4e-12 75.9 64 60.9
BraA06t24373Z Brassica rapa HOM05D000470 ORTHO05D000348 1.4e-12 75.9 64 60.9
Cpa.g.sc10.64 Carica papaya HOM05D000470 ORTHO05D000348 1.8e-12 75.5 68 57.4
DCAR_016306 Daucus carota HOM05D000470 ORTHO05D000348 2.3e-12 75.1 69 55.1
Zm00001eb388680 Zea mays HOM05D000470 ORTHO05D000348 2.3e-12 75.1 65 56.9
Lsat_1_v5_gn_4_86861 Lactuca sativa HOM05D000470 ORTHO05D000348 3.0e-12 74.7 67 55.2
Rhsim12G0183700 Rhododendron simsii HOM05D000470 ORTHO05D000348 3.0e-12 74.7 64 60.9
TWI18G1038 Tripterygium wilfordii HOM05D000470 ORTHO05D000348 3.0e-12 74.7 68 57.4
Lsat_1_v5_gn_1_30920 Lactuca sativa HOM05D000470 ORTHO05D000348 4.0e-12 74.3 68 61.8
vmacro16848 Vaccinium macrocarpon HOM05D000470 ORTHO05D000348 4.0e-12 74.3 68 57.4
AL2G40480 Arabidopsis lyrata HOM05D000470 ORTHO05D000348 5.2e-12 73.9 67 56.7
AT1G80900 Arabidopsis thaliana HOM05D000470 ORTHO05D000348 5.2e-12 73.9 67 55.2
vmacro19060 Vaccinium macrocarpon HOM05D000470 ORTHO05D000348 5.2e-12 73.9 64 57.8
MSTRG.11187 Avicennia marina HOM05D000470 ORTHO05D000348 8.8e-12 73.2 64 60.9
HanXRQChr05g0153741 Helianthus annuus HOM05D000470 ORTHO05D000348 8.8e-12 73.2 69 56.5
HanXRQChr09g0274071 Helianthus annuus HOM05D000470 ORTHO05D000348 8.8e-12 73.2 69 56.5
Oeu004563.2 Olea europaea HOM05D000470 ORTHO05D000348 8.8e-12 73.2 64 60.9
Potri.003G183600 Populus trichocarpa HOM05D000470 ORTHO05D000348 8.8e-12 73.2 64 59.4
MSTRG.22802 Avicennia marina HOM05D000470 ORTHO05D000348 1.5e-11 72.4 64 60.9
DCAR_025554 Daucus carota HOM05D000470 ORTHO05D000348 1.5e-11 72.4 69 58.0
Rhsim08G0204400 Rhododendron simsii HOM05D000470 ORTHO05D000348 1.5e-11 72.4 64 59.4
Hund06802 Selenicereus undatus HOM05D000470 ORTHO05D000348 1.5e-11 72.4 62 61.3
CiPaw.01G255500 Carya illinoinensis HOM05D000470 ORTHO05D000348 2.6e-11 71.6 61 57.4
ECA246G3628 Erigeron canadensis HOM05D000470 ORTHO05D000348 2.6e-11 71.6 69 56.5
HanXRQChr09g0274461 Helianthus annuus HOM05D000470 ORTHO05D000348 2.6e-11 71.6 69 55.1
CAN.G185.12 Capsicum annuum HOM05D000470 ORTHO05D000348 3.4e-11 71.2 68 54.4
AUR62006325 Chenopodium quinoa HOM05D000470 ORTHO05D000348 3.4e-11 71.2 64 59.4
AUR62026364 Chenopodium quinoa HOM05D000470 ORTHO05D000348 3.4e-11 71.2 64 59.4
Nn2g12406 Nelumbo nucifera HOM05D000470 ORTHO05D000348 3.4e-11 71.2 62 62.9
SHI11313 Sapria himalayana HOM05D000470 ORTHO05D000348 3.4e-11 71.2 65 56.9
Actinidia08942 Actinidia chinensis HOM05D000470 ORTHO05D003854 4.4e-11 70.9 62 59.7
arahy.Tifrunner.gnm1.ann1.FURL1J Arachis hypogaea HOM05D000470 ORTHO05D000348 4.4e-11 70.9 67 53.7
Eucgr.F03969 Eucalyptus grandis HOM05D000470 ORTHO05D000348 4.4e-11 70.9 64 57.8
Actinidia36872 Actinidia chinensis HOM05D000470 ORTHO05D000348 5.7e-11 70.5 62 59.7
EL10Ac7g17032 Beta vulgaris HOM05D000470 ORTHO05D000348 5.7e-11 70.5 60 61.7
Actinidia18252 Actinidia chinensis HOM05D000470 ORTHO05D000348 7.5e-11 70.1 64 56.2
Actinidia25474 Actinidia chinensis HOM05D000470 ORTHO05D000348 7.5e-11 70.1 64 56.2
HPP92_011632 Vanilla planifolia HOM05D000470 ORTHO05D000348 7.5e-11 70.1 68 51.5
TWI18G0763 Tripterygium wilfordii HOM05D000470 ORTHO05D000348 9.8e-11 69.7 68 54.4
BraA07t31986Z Brassica rapa HOM05D000470 ORTHO05D000348 1.3e-10 69.3 67 55.2
Hma1.2p1_0109F.1_g052650 Hydrangea macrophylla HOM05D000470 ORTHO05D000348 1.3e-10 69.3 61 59.0
Aa31LG4G1210 Aethionema arabicum HOM05D000470 ORTHO05D000348 1.7e-10 68.9 62 54.8
Ah.08g209850 Amaranthus hybridus HOM05D000470 ORTHO05D000348 1.7e-10 68.9 60 55.0
BcaB05g25216 Brassica carinata HOM05D000470 ORTHO05D000348 1.7e-10 68.9 70 52.9
Gohir.D09G090700 Gossypium hirsutum HOM05D000470 ORTHO05D000348 1.7e-10 68.9 67 53.7
Gorai.006G106900 Gossypium raimondii HOM05D000470 ORTHO05D000348 1.7e-10 68.9 67 53.7
SEGI_16818 Sequoiadendron giganteum HOM05D000470 ORTHO05D000348 1.7e-10 68.9 64 54.7
THA.LOC104812417 Tarenaya hassleriana HOM05D000470 ORTHO05D000348 1.7e-10 68.9 67 55.2
A07p44790 Brassica napus HOM05D000470 ORTHO05D000348 2.8e-10 68.2 67 55.2
C06p53610 Brassica napus HOM05D000470 ORTHO05D000348 2.8e-10 68.2 67 55.2
CAN.G22.50 Capsicum annuum HOM05D000470 ORTHO05D000348 2.8e-10 68.2 66 56.1
Manes.11G068600 Manihot esculenta HOM05D000470 ORTHO05D000348 2.8e-10 68.2 68 55.9
BcaB02g08713 Brassica carinata HOM05D000470 ORTHO05D000348 3.7e-10 67.8 67 55.2
ATR0580G299 Amborella trichopoda HOM05D000470 ORTHO05D000348 4.8e-10 67.4 65 53.8
HPP92_017171 Vanilla planifolia HOM05D000470 ORTHO05D000348 4.8e-10 67.4 64 56.2
Ah.15g090330 Amaranthus hybridus HOM05D000470 ORTHO05D000348 6.3e-10 67.0 60 55.0
BcaC03g15920 Brassica carinata HOM05D000470 ORTHO05D000348 6.3e-10 67.0 65 55.4
A02p23070 Brassica napus HOM05D000470 ORTHO05D000348 6.3e-10 67.0 65 55.4
C02p36820 Brassica napus HOM05D000470 ORTHO05D000348 6.3e-10 67.0 65 55.4
BolC2t09693H Brassica oleracea HOM05D000470 ORTHO05D000348 6.3e-10 67.0 65 55.4
BraA02t07305Z Brassica rapa HOM05D000470 ORTHO05D000348 6.3e-10 67.0 65 55.4
ECA247G0017 Erigeron canadensis HOM05D000470 ORTHO05D000348 6.3e-10 67.0 69 56.5
ECA232G3944 Erigeron canadensis HOM05D000470 ORTHO05D000348 1.1e-09 66.2 67 50.7
Lsat_1_v5_gn_5_8301 Lactuca sativa HOM05D000470 ORTHO05D000348 1.1e-09 66.2 67 56.7
HPP92_010740 Vanilla planifolia HOM05D000470 ORTHO05D000348 1.1e-09 66.2 64 53.1
HanXRQChr08g0235881 Helianthus annuus HOM05D000470 ORTHO05D000348 1.8e-09 65.5 64 56.2
HanXRQChr02g0033991 Helianthus annuus HOM05D000470 ORTHO05D000348 1.2e-08 62.8 67 55.2
Zm00001eb078200 Zea mays HOM05D000470 ORTHO05D000348 1.6e-08 62.4 65 49.2
Zm00001eb274990 Zea mays HOM05D000470 ORTHO05D000348 5.9e-08 60.5 54 53.7
unitig_52.g17465 Utricularia gibba HOM05D000470 ORTHO05D000348 1.0e-07 59.7 63 52.4
SalBow7G1154 Salvia bowleyana HOM05D000470 ORTHO05D000348 5.0e-07 57.4 41 65.9
Eucgr.J03122 Eucalyptus grandis HOM05D000470 ORTHO05D000348 1.1e-06 56.2 63 47.6
BcaC08g47536 Brassica carinata HOM05D000470 ORTHO05D000348 1.9e-06 55.5 67 50.7
BolC6t40377H Brassica oleracea HOM05D000470 ORTHO05D000348 1.9e-06 55.5 67 50.7
Mapoly0071s0010 Marchantia polymorpha HOM05D000470 ORTHO05D000348 1.9e-06 55.5 64 48.4
TPR.G11403 Trifolium pratense HOM05D000470 ORTHO05D000348 1.9e-06 55.5 37 70.3
ATR0177G038 Amborella trichopoda HOM05D000470 ORTHO05D000348 3.3e-06 54.7 59 47.5
Pp3c24_14620 Physcomitrium patens HOM05D000470 ORTHO05D000348 5.5e-06 53.9 64 50.0
Aqoxy3G03688 Aquilegia oxysepala HOM05D000470 ORTHO05D000348 7.2e-06 53.5 67 44.8
SMO361G0058 Selaginella moellendorffii HOM05D000470 ORTHO05D000348 9.5e-06 53.1 62 48.4
Thecc.06G043300 Theobroma cacao HOM05D000470 ORTHO05D000348 9.5e-06 53.1 68 48.5


User provided reference genes

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