Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g098950 Medicago truncatula HOM05D006693 ORTHO05D008092 0.0e+00 2895.5 1443 100.0
TPR.G12950 Trifolium pratense HOM05D006693 ORTHO05D008092 0.0e+00 2540.0 1478 86.6
Psat7g029760 Pisum sativum HOM05D006693 ORTHO05D008092 0.0e+00 2521.5 1478 85.7
Ca_10951_v3 Cicer arietinum L. HOM05D006693 ORTHO05D008092 0.0e+00 2470.7 1469 85.2
Lj4g0019588 Lotus japonicus HOM05D006693 ORTHO05D008092 0.0e+00 2269.2 1478 77.6
Glyma.05G212000 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 2231.1 1478 77.1
Glyma.08G018400 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 2227.2 1479 77.2
Phvul.002G293300 Phaseolus vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 2165.2 1479 75.7
VMungo0251G0136 Vigna mungo HOM05D006693 ORTHO05D008092 0.0e+00 2160.6 1479 75.6
Lalb_Chr16g0390281 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 2118.2 1483 73.6
Lalb_Chr05g0224471 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 2095.5 1455 73.5
arahy.Tifrunner.gnm1.ann1.ILCZ5C Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 2035.4 1499 70.2
arahy.Tifrunner.gnm1.ann1.U3KDBF Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 2033.1 1502 70.4
Cfa012249 Carpinus fangiana HOM05D006693 ORTHO05D008092 0.0e+00 1728.8 1522 59.4
QL02p033351 Quercus lobata HOM05D006693 ORTHO05D008092 0.0e+00 1709.9 1524 58.7
CiPaw.12G089000 Carya illinoinensis HOM05D006693 ORTHO05D008092 0.0e+00 1709.5 1525 58.8
Atru.chr9.2109 Acer truncatum HOM05D006693 ORTHO05D008092 0.0e+00 1706.4 1514 59.0
MD06G1091700 Malus domestica HOM05D006693 ORTHO05D008092 0.0e+00 1690.6 1517 58.6
Dinv38897 Davidia involucrata HOM05D006693 ORTHO05D008092 0.0e+00 1686.0 1554 57.9
GSVIVG01019421001 Vitis vinifera HOM05D006693 ORTHO05D008092 0.0e+00 1652.5 1517 58.4
Prupe.5G106900 Prunus persica HOM05D006693 ORTHO05D008092 0.0e+00 1651.3 1479 59.0
FvH4_5g03240 Fragaria vesca HOM05D006693 ORTHO05D008092 0.0e+00 1637.5 1507 57.7
Haze_08752 Corylus avellana HOM05D006693 ORTHO05D008092 0.0e+00 1630.2 1547 56.2
Thecc.03G286900 Theobroma cacao HOM05D006693 ORTHO05D008092 0.0e+00 1629.8 1516 57.7
Ciclev10018484m.g Citrus clementina HOM05D006693 ORTHO05D008092 0.0e+00 1627.1 1524 58.4
Potri.003G132900 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1624.8 1534 56.9
RcHm_v2.0_Chr7g0196531 Rosa chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1624.8 1471 58.3
Potri.001G098700 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1620.1 1510 57.2
CSS0002391 Camellia sinensis var. sinensis HOM05D006693 ORTHO05D008092 0.0e+00 1615.1 1533 57.0
Duzib205G0177 Durio zibethinus HOM05D006693 ORTHO05D008092 0.0e+00 1606.3 1514 57.6
FAN04G0987 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1605.5 1523 56.3
Manes.02G016800 Manihot esculenta HOM05D006693 ORTHO05D008092 0.0e+00 1600.1 1489 57.6
FAN18G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1597.0 1609 54.1
Gorai.003G085400 Gossypium raimondii HOM05D006693 ORTHO05D008092 0.0e+00 1581.2 1522 57.2
Sabra03G0095200 Salix brachista HOM05D006693 ORTHO05D008092 0.0e+00 1577.0 1552 56.1
Rhsim07G0087200 Rhododendron simsii HOM05D006693 ORTHO05D008092 0.0e+00 1573.9 1559 55.2
Gohir.D03G078700 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1570.1 1522 57.0
FAN04G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1544.3 1528 54.3
FAN13G0718 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1543.1 1603 53.0
MELO3C016336.2 Cucumis melo HOM05D006693 ORTHO05D008092 0.0e+00 1538.5 1521 55.0
PGR031G3028 Punica granatum HOM05D006693 ORTHO05D008092 0.0e+00 1510.4 1507 53.7
Nn6g32458 Nelumbo nucifera HOM05D006693 ORTHO05D008092 0.0e+00 1501.1 1523 54.1
Aqoxy5G04083 Aquilegia oxysepala HOM05D006693 ORTHO05D008092 0.0e+00 1494.9 1544 52.8
THA.LOC104814738 Tarenaya hassleriana HOM05D006693 ORTHO05D008092 0.0e+00 1487.2 1498 53.9
PSO170G0731 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1480.3 1528 52.2
Eucgr.D01808 Eucalyptus grandis HOM05D006693 ORTHO05D008092 0.0e+00 1479.5 1504 54.5
vmacro13975 Vaccinium macrocarpon HOM05D006693 ORTHO05D008092 0.0e+00 1478.4 1534 53.1
PSO063G3881 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1474.5 1524 52.2
Sp6g06170 Schrenkiella parvula HOM05D006693 ORTHO05D008092 0.0e+00 1472.2 1495 54.0
TAR629G1282 Trochodendron aralioides HOM05D006693 ORTHO05D008092 0.0e+00 1469.9 1416 55.4
AL6G45650 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 1453.7 1501 52.6
Migut.A00715 Erythranthe guttata HOM05D006693 ORTHO05D008092 0.0e+00 1450.3 1523 51.5
Thhalv10028363m.g Eutrema salsugineum HOM05D006693 ORTHO05D008092 0.0e+00 1449.9 1495 53.4
A09p27880 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 1449.5 1498 53.3
Lj2A178T45 Lonicera japonica HOM05D006693 ORTHO05D008092 0.0e+00 1446.4 1550 51.9
BcaB01g01624 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 1445.3 1498 53.5
BraA09t38356Z Brassica rapa HOM05D006693 ORTHO05D008092 0.0e+00 1443.7 1515 52.8
Peaxi162Scf00074g01720 Petunia axillaris HOM05D006693 ORTHO05D008092 0.0e+00 1440.2 1494 52.8
BcaC04g21124 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 1439.9 1497 53.4
C09p35290 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 1439.9 1497 53.4
AT4G11270 Arabidopsis thaliana HOM05D006693 ORTHO05D008092 0.0e+00 1438.7 1493 53.0
Carub.0006s3015 Capsella rubella HOM05D006693 ORTHO05D008092 0.0e+00 1434.9 1520 52.2
BolC9t56372H Brassica oleracea HOM05D006693 ORTHO05D008092 0.0e+00 1433.7 1514 52.9
Sopen08g029940 Solanum pennellii HOM05D006693 ORTHO05D008092 0.0e+00 1428.3 1530 51.2
SGA_v2.0_scaffold173G39133 Striga asiatica HOM05D006693 ORTHO05D008092 0.0e+00 1427.5 1541 51.1
MBI06_g33534_MAGBIO Magnolia biondii HOM05D006693 ORTHO05D008092 0.0e+00 1427.2 1570 50.8
Cc08_g15300 Coffea canephora HOM05D006693 ORTHO05D008092 0.0e+00 1418.7 1540 51.8
Aa31LG9G10920 Aethionema arabicum HOM05D006693 ORTHO05D008092 0.0e+00 1416.4 1560 50.8
Sc07g0009850 Simmondsia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1415.2 1521 52.2
Gohir.A02G105100 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1412.9 1339 57.9
Lsat_1_v5_gn_6_84960 Lactuca sativa HOM05D006693 ORTHO05D008092 0.0e+00 1412.5 1492 51.2
PGSC0003DMG400012182 Solanum tuberosum HOM05D006693 ORTHO05D008092 0.0e+00 1410.2 1532 50.5
EL10Ac5g12841 Beta vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 1405.6 1495 50.6
SalBow1G8229 Salvia bowleyana HOM05D006693 ORTHO05D008092 0.0e+00 1398.6 1563 50.5
MSTRG.11217 Avicennia marina HOM05D006693 ORTHO05D008092 0.0e+00 1396.7 1486 51.9
HanXRQChr03g0085981 Helianthus annuus HOM05D006693 ORTHO05D008092 0.0e+00 1392.1 1480 51.1
AUR62010757 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1389.4 1517 51.4
Ah.12g051930 Amaranthus hybridus HOM05D006693 ORTHO05D008092 0.0e+00 1386.3 1497 50.3
DCAR_008351 Daucus carota HOM05D006693 ORTHO05D008092 0.0e+00 1379.8 1507 51.0
Hund14266 Selenicereus undatus HOM05D006693 ORTHO05D008092 0.0e+00 1363.6 1490 50.3
AUR62019758 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1360.1 1527 50.0
Solyc08g081640.3 Solanum lycopersicum HOM05D006693 ORTHO05D008092 0.0e+00 1348.6 1522 49.8
Oeu059571.2 Olea europaea HOM05D006693 ORTHO05D008092 0.0e+00 1330.5 1529 49.5
Sed0010800 Sechium edule HOM05D006693 ORTHO05D008092 0.0e+00 1323.5 1405 51.2
ECA240G0689 Erigeron canadensis HOM05D006693 ORTHO05D008092 0.0e+00 1316.6 1484 49.1
CsaV3_4G006130 Cucumis sativus L. HOM05D006693 ORTHO05D008092 0.0e+00 1302.7 1300 54.7
ClCG07G007830 Citrullus lanatus HOM05D006693 ORTHO05D008092 0.0e+00 1282.3 1347 52.1
ATR0721G120 Amborella trichopoda HOM05D006693 ORTHO05D008092 0.0e+00 1277.3 1576 47.5
Actinidia27362 Actinidia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1254.6 1353 52.2
HPP92_021742 Vanilla planifolia HOM05D006693 ORTHO05D008092 0.0e+00 1235.3 1517 46.1
AL6G45560 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 1200.3 1435 48.2
CDE02G1190 Ceratophyllum demersum HOM05D006693 ORTHO05D008092 0.0e+00 1173.7 1523 46.0
Nitab4.5_0007163g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 0.0e+00 1132.9 1109 54.6
Zm00001eb382730 Zea mays HOM05D006693 ORTHO05D008092 0.0e+00 1104.7 1527 43.0
Nitab4.5_0014092g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 2.0e-307 1059.7 1084 53.3
COL.COLO4_08357 Corchorus olitorius HOM05D006693 ORTHO05D008092 5.8e-262 908.7 993 49.6
AagrBONN_evm.TU.Sc2ySwM_368.1009 Anthoceros agrestis HOM05D006693 ORTHO05D008092 1.5e-257 894.0 1629 36.2
CARHR255320 Cardamine hirsuta HOM05D006693 ORTHO05D008092 2.6e-206 723.8 890 46.2
Actinidia33729 Actinidia chinensis HOM05D006693 ORTHO05D008092 1.9e-180 637.9 484 70.2
COL.COLO4_08358 Corchorus olitorius HOM05D006693 ORTHO05D008092 2.3e-178 630.9 484 68.2
SMO358G0585 Selaginella moellendorffii HOM05D006693 ORTHO05D008092 3.4e-169 600.5 1459 30.6
SEGI_35152 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 6.4e-152 543.1 1039 36.1
Os06g0331300 Oryza sativa ssp. japonica HOM05D006693 ORTHO05D008092 1.1e-138 499.2 686 42.9
Cpa.g.sc180.1 Carica papaya HOM05D006693 ORTHO05D008092 3.0e-109 401.4 383 55.6
SEGI_07995 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 9.8e-60 236.9 601 31.3
FAN08G3186 Fragaria x ananassa HOM05D006693 ORTHO05D008092 1.2e-49 203.4 181 55.2
Cpa.g.sc180.2 Carica papaya HOM05D006693 ORTHO05D008092 2.3e-45 189.1 163 61.3
ClCG07G007840 Citrullus lanatus HOM05D006693 ORTHO05D008092 6.6e-40 171.0 107 73.8
Cpa.g.sc180.5 Carica papaya HOM05D006693 ORTHO05D008092 2.3e-32 146.0 93 69.9
Cpa.g.sc180.3 Carica papaya HOM05D006693 ORTHO05D008092 7.3e-23 114.4 81 71.6
SEGI_11223 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 1.5e-20 106.7 88 60.2
SEGI_38420 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 1.5e-20 106.7 88 60.2
Actinidia33728 Actinidia chinensis HOM05D006693 ORTHO05D008092 1.9e-18 99.8 67 80.6
CAN.G532.47 Capsicum annuum HOM05D006693 ORTHO05D008092 4.2e-18 98.6 89 50.6
Cpa.g.c42974 Carica papaya HOM05D006693 ORTHO05D008092 5.1e-16 91.7 83 56.6
Actinidia27361 Actinidia chinensis HOM05D006693 ORTHO05D008092 2.8e-14 85.9 82 52.4


User provided reference genes

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