Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g098755 Medicago truncatula HOM05D003900 ORTHO05D005009 3.2e-186 656.0 672 100.0
TPR.G2949 Trifolium pratense HOM05D003900 ORTHO05D005009 1.0e-123 448.4 677 81.5
Psat7g005640 Pisum sativum HOM05D003900 ORTHO05D005009 8.5e-123 445.3 684 81.6
Lj4g0005982 Lotus japonicus HOM05D003900 ORTHO05D005009 9.1e-85 318.9 281 73.0
Phvul.002G326200 Phaseolus vulgaris HOM05D003900 ORTHO05D005009 1.5e-82 311.6 606 79.5
VMungo0251G1173 Vigna mungo HOM05D003900 ORTHO05D005009 2.5e-82 310.8 602 77.7
Glyma.16G031800 Glycine max HOM05D003900 ORTHO05D005009 3.8e-75 287.0 603 78.9
Ca_17228_v3 Cicer arietinum L. HOM05D000113 ORTHO05D005009 7.3e-74 282.7 590 77.6
Lalb_Chr04g0259301 Lupinus albus HOM05D003900 ORTHO05D005009 1.3e-70 271.9 595 76.6
arahy.Tifrunner.gnm1.ann1.U9H0N8 Arachis hypogaea HOM05D003900 ORTHO05D005009 9.8e-63 245.7 282 62.4
arahy.Tifrunner.gnm1.ann1.K45FBX Arachis hypogaea HOM05D003900 ORTHO05D005009 3.7e-62 243.8 282 62.4
QL04p055515 Quercus lobata HOM05D003900 ORTHO05D005009 4.6e-60 236.9 199 56.3
CiPaw.01G067100 Carya illinoinensis HOM05D003900 ORTHO05D005009 7.8e-60 236.1 206 55.8
CiPaw.01G067500 Carya illinoinensis HOM05D003900 ORTHO05D005009 7.8e-60 236.1 200 56.5
Dinv43863 Davidia involucrata HOM05D003900 ORTHO05D005009 5.0e-59 233.4 199 57.3
CiPaw.01G067300 Carya illinoinensis HOM05D003900 ORTHO05D005009 8.6e-59 232.6 200 57.0
CiPaw.01G066800 Carya illinoinensis HOM05D003900 ORTHO05D005009 1.9e-58 231.5 200 56.0
CiPaw.01G067400 Carya illinoinensis HOM05D003900 ORTHO05D005009 8.1e-57 226.1 201 54.7
GSVIVG01026966001 Vitis vinifera HOM05D003900 ORTHO05D005009 3.1e-56 224.2 197 55.3
Nn1g01685 Nelumbo nucifera HOM05D003900 ORTHO05D005009 5.2e-56 223.4 195 54.9
CiPaw.01G067200 Carya illinoinensis HOM05D003900 ORTHO05D005009 6.8e-56 223.0 200 54.0
Prupe.2G177500 Prunus persica HOM05D003900 ORTHO05D005009 1.5e-55 221.9 199 55.8
CiPaw.01G066600 Carya illinoinensis HOM05D003900 ORTHO05D005009 2.0e-55 221.5 197 54.3
Haze_15564 Corylus avellana HOM05D003900 ORTHO05D005009 2.0e-55 221.5 200 55.0
CSS0000093 Camellia sinensis var. sinensis HOM05D003900 ORTHO05D005009 3.4e-55 220.7 278 56.8
CSS0016355 Camellia sinensis var. sinensis HOM05D003900 ORTHO05D005009 3.4e-55 220.7 278 56.8
TAR629G0263 Trochodendron aralioides HOM05D003900 ORTHO05D005009 5.8e-55 219.9 199 55.3
RcHm_v2.0_Chr7g0228211 Rosa chinensis HOM05D003900 ORTHO05D005009 1.3e-54 218.8 193 54.9
Medtr3g088810 Medicago truncatula HOM05D003900 ORTHO05D005009 2.2e-54 218.0 659 54.0
MD07G1131300 Malus domestica HOM05D003900 ORTHO05D005009 1.9e-53 214.9 201 50.7
CANSAT56G3111 Cannabis sativa HOM05D003900 ORTHO05D005009 2.4e-53 214.5 227 48.0
Atru.chr5.563 Acer truncatum HOM05D003900 ORTHO05D005009 3.2e-53 214.2 282 55.3
Atru.chr5.581 Acer truncatum HOM05D003900 ORTHO05D005009 1.2e-52 212.2 282 55.7
MD01G1071400 Malus domestica HOM05D003900 ORTHO05D005009 7.8e-52 209.5 201 51.2
Dinv32521 Davidia involucrata HOM05D003900 ORTHO05D005009 2.3e-51 208.0 275 42.2
RcHm_v2.0_Chr1g0357681 Rosa chinensis HOM05D003900 ORTHO05D005009 1.5e-50 205.3 193 51.8
Sc01g0003220 Simmondsia chinensis HOM05D003900 ORTHO05D005009 2.5e-50 204.5 283 54.4
Thecc.01G352500 Theobroma cacao HOM05D003900 ORTHO05D005009 1.2e-49 202.2 203 50.7
FAN04G0755 Fragaria x ananassa HOM05D003900 ORTHO05D005009 2.8e-49 201.1 193 51.8
FvH4_7g15360 Fragaria vesca HOM05D003900 ORTHO05D005009 3.6e-49 200.7 191 49.7
Actinidia20162 Actinidia chinensis HOM05D003900 ORTHO05D005009 8.1e-49 199.5 195 51.8
FvH4_5g03011 Fragaria vesca HOM05D003900 ORTHO05D005009 8.1e-49 199.5 201 52.2
TWI23G0979 Tripterygium wilfordii HOM05D003900 ORTHO05D005009 8.1e-49 199.5 282 53.9
VMungo0251G0997 Vigna mungo HOM05D003900 ORTHO05D005009 1.8e-48 198.4 159 62.3
CsaV3_7G025780 Cucumis sativus L. HOM05D003900 ORTHO05D005009 4.0e-48 197.2 200 49.0
Rhsim07G0010500 Rhododendron simsii HOM05D003900 ORTHO05D005009 6.8e-48 196.4 198 51.5
Oeu015216.1 Olea europaea HOM05D003900 ORTHO05D005009 8.9e-48 196.1 183 51.4
MELO3C029134.2 Cucumis melo HOM05D003900 ORTHO05D005009 3.4e-47 194.1 205 47.3
FAN03G2211 Fragaria x ananassa HOM05D003900 ORTHO05D005009 4.4e-47 193.7 191 48.2
Sabra14G0065500 Salix brachista HOM05D003900 ORTHO05D005009 4.4e-47 193.7 206 47.6
FAN10G3614 Fragaria x ananassa HOM05D003900 ORTHO05D005009 7.6e-47 193.0 191 48.7
PSO266G0010 Papaver somniferum HOM05D003900 ORTHO05D005009 7.6e-47 193.0 202 45.5
Duzib138G1643 Durio zibethinus HOM05D003900 ORTHO05D005009 9.9e-47 192.6 251 51.0
Lj7C507T1 Lonicera japonica HOM05D003900 ORTHO05D005009 9.9e-47 192.6 187 51.3
PGR142G0969 Punica granatum HOM05D003900 ORTHO05D005009 1.7e-46 191.8 199 45.2
FAN01G0431 Fragaria x ananassa HOM05D003900 ORTHO05D005009 2.2e-46 191.4 191 48.2
HanXRQChr04g0120801 Helianthus annuus HOM05D003900 ORTHO05D005009 2.2e-46 191.4 224 44.6
Manes.01G252300 Manihot esculenta HOM05D003900 ORTHO05D005009 2.2e-46 191.4 194 47.4
Nitab4.5_0010695g0010 Nicotiana tabacum HOM05D003900 ORTHO05D005009 2.2e-46 191.4 197 48.2
FAN06G0440 Fragaria x ananassa HOM05D003900 ORTHO05D005009 2.9e-46 191.0 191 47.6
Nitab4.5_0000915g0110 Nicotiana tabacum HOM05D003900 ORTHO05D005009 2.9e-46 191.0 197 48.2
Cc02_g38560 Coffea canephora HOM05D003900 ORTHO05D005009 3.8e-46 190.7 197 48.2
Gohir.D12G110200 Gossypium hirsutum HOM05D003900 ORTHO05D005009 4.9e-46 190.3 199 47.2
vmacro13229 Vaccinium macrocarpon HOM05D003900 ORTHO05D005009 6.4e-46 189.9 199 49.7
FvH4_5g32150 Fragaria vesca HOM05D003900 ORTHO05D005009 8.4e-46 189.5 193 48.7
Gorai.008G119500 Gossypium raimondii HOM05D003900 ORTHO05D005009 1.1e-45 189.1 199 46.7
Potri.014G090400 Populus trichocarpa HOM05D003900 ORTHO05D005009 1.1e-45 189.1 206 47.1
COL.COLO4_12777 Corchorus olitorius HOM05D003900 ORTHO05D005009 5.4e-45 186.8 199 46.2
Duzib133G1046 Durio zibethinus HOM05D003900 ORTHO05D005009 5.4e-45 186.8 280 51.8
PSO384G0446 Papaver somniferum HOM05D003900 ORTHO05D005009 1.2e-44 185.7 205 43.9
Migut.B01798 Erythranthe guttata HOM05D003900 ORTHO05D005009 4.6e-44 183.7 203 44.3
THA.LOC104817316 Tarenaya hassleriana HOM05D003900 ORTHO05D005009 6.0e-44 183.3 194 44.8
Gohir.A12G106900 Gossypium hirsutum HOM05D003900 ORTHO05D005009 7.8e-44 183.0 199 46.2
Manes.05G029400 Manihot esculenta HOM05D003900 ORTHO05D005009 7.8e-44 183.0 198 45.5
RcHm_v2.0_Chr5g0017031 Rosa chinensis HOM05D003900 ORTHO05D005009 7.8e-44 183.0 151 58.3
SGA_v2.0_scaffold4G02283 Striga asiatica HOM05D003900 ORTHO05D005009 1.0e-43 182.6 197 43.1
Solyc01g095110.4 Solanum lycopersicum HOM05D003900 ORTHO05D005009 1.7e-43 181.8 201 45.3
CAN.G78.130 Capsicum annuum HOM05D003900 ORTHO05D005009 3.9e-43 180.6 197 47.2
Sed0017189 Sechium edule HOM05D003900 ORTHO05D005009 3.9e-43 180.6 199 45.7
Sopen01g038900 Solanum pennellii HOM05D003900 ORTHO05D005009 5.1e-43 180.3 201 44.8
PGSC0003DMG400000195 Solanum tuberosum HOM05D003900 ORTHO05D005009 8.7e-43 179.5 197 45.7
ECA236G1505 Erigeron canadensis HOM05D003900 ORTHO05D005009 1.9e-42 178.3 206 46.1
FAN06G2614 Fragaria x ananassa HOM05D003900 ORTHO05D005009 3.3e-42 177.6 194 44.8
Lsat_1_v5_gn_7_2720 Lactuca sativa HOM05D003900 ORTHO05D005009 3.3e-42 177.6 200 44.5
Peaxi162Scf00020g00155 Petunia axillaris HOM05D003900 ORTHO05D005009 4.3e-42 177.2 201 45.8
ClCG09G009150 Citrullus lanatus HOM05D003900 ORTHO05D005009 5.6e-42 176.8 202 44.6
FAN10G1060 Fragaria x ananassa HOM05D003900 ORTHO05D005009 7.3e-42 176.4 165 49.7
CARHR171850 Cardamine hirsuta HOM05D003900 ORTHO05D005009 2.1e-41 174.9 195 44.1
FAN06G4981 Fragaria x ananassa HOM05D003900 ORTHO05D005009 4.7e-41 173.7 194 44.3
MBI11_g19575_MAGBIO Magnolia biondii HOM05D003900 ORTHO05D005009 4.7e-41 173.7 199 44.7
Ah.15g096610 Amaranthus hybridus HOM05D003900 ORTHO05D005009 6.2e-41 173.3 195 44.1
AT3G61520 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 1.4e-40 172.2 195 43.6
AL5G43880 Arabidopsis lyrata HOM05D003900 ORTHO05D005009 9.0e-40 169.5 194 43.3
AUR62004412 Chenopodium quinoa HOM05D003900 ORTHO05D005009 1.5e-39 168.7 193 42.5
AT5G28370 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 2.0e-39 168.3 195 42.6
AT5G28460 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 2.0e-39 168.3 195 42.6
AUR62022618 Chenopodium quinoa HOM05D003900 ORTHO05D005009 7.6e-39 166.4 192 44.8
Aa31LG10G15460 Aethionema arabicum HOM05D003900 ORTHO05D005009 9.9e-39 166.0 192 42.2
Aa31LG1G27520 Aethionema arabicum HOM05D003900 ORTHO05D005009 1.3e-38 165.6 196 42.9
BcaB02g07375 Brassica carinata HOM05D003900 ORTHO05D005009 1.7e-38 165.2 195 42.6
A07p25540 Brassica napus HOM05D003900 ORTHO05D005009 3.8e-38 164.1 196 42.9
EL10Ac1g00355 Beta vulgaris HOM05D003900 ORTHO05D005009 4.9e-38 163.7 193 42.0
Carub.0005s2821 Capsella rubella HOM05D003900 ORTHO05D005009 6.4e-38 163.3 195 41.0
BraA07t30195Z Brassica rapa HOM05D003900 ORTHO05D005009 8.4e-38 162.9 196 43.4
Thhalv10001319m.g Eutrema salsugineum HOM05D003900 ORTHO05D005009 7.1e-37 159.8 195 43.1
Eucgr.E00097 Eucalyptus grandis HOM05D003900 ORTHO05D005009 9.3e-37 159.5 205 39.5
BolC6t37920H Brassica oleracea HOM05D003900 ORTHO05D005009 1.2e-36 159.1 196 41.8
C06p27530 Brassica napus HOM05D003900 ORTHO05D005009 1.6e-36 158.7 196 41.8
Sp4g28170 Schrenkiella parvula HOM05D003900 ORTHO05D005009 1.6e-36 158.7 196 41.3
Thhalv10022571m.g Eutrema salsugineum HOM05D003900 ORTHO05D005009 2.1e-36 158.3 194 41.8
BcaC08g45129 Brassica carinata HOM05D003900 ORTHO05D005009 4.6e-36 157.1 196 41.8
SalBow3G3666 Salvia bowleyana HOM05D003900 ORTHO05D005009 6.0e-36 156.8 196 39.8
RcHm_v2.0_Chr3g0468501 Rosa chinensis HOM05D003900 ORTHO05D005009 2.5e-34 151.4 193 45.1
Aqoxy7G01955 Aquilegia oxysepala HOM05D003900 ORTHO05D005009 4.0e-32 144.1 278 34.5
DCAR_025213 Daucus carota HOM05D003900 ORTHO05D005009 9.0e-32 142.9 281 45.9
ATR0721G158 Amborella trichopoda HOM05D003900 ORTHO05D005009 2.0e-31 141.7 190 42.1
HPP92_011504 Vanilla planifolia HOM05D003900 ORTHO05D005009 1.7e-30 138.7 201 38.3
CDE10G0308 Ceratophyllum demersum HOM05D003834 ORTHO05D004483 5.1e-27 127.1 171 40.9
FAN18G4460 Fragaria x ananassa HOM05D003900 ORTHO05D005009 4.3e-26 124.0 193 39.9
FAN18G1403 Fragaria x ananassa HOM05D003900 ORTHO05D005009 8.1e-25 119.8 96 61.5
RcHm_v2.0_Chr7g0228291 Rosa chinensis HOM05D003900 ORTHO05D005009 1.4e-24 119.0 86 65.1
Cfa003873 Carpinus fangiana HOM05D003900 ORTHO05D005009 1.2e-23 115.9 209 36.8
Ciclev10019067m.g Citrus clementina HOM05D003900 ORTHO05D005009 4.9e-22 110.5 191 35.6
Aqoxy4G00899 Aquilegia oxysepala HOM05D003900 ORTHO05D005009 1.8e-19 102.1 184 37.5
VMungo1309G0982 Vigna mungo HOM05D003900 ORTHO05D005009 4.5e-15 87.4 143 38.5
MBI11_g19576_MAGBIO Magnolia biondii HOM05D003900 ORTHO05D005009 1.7e-14 85.5 123 37.4
Aqoxy2G02642 Aquilegia oxysepala HOM05D003900 ORTHO05D016547 6.5e-14 83.6 175 30.9
SEGI_22559 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 3.2e-13 81.3 85 45.9
SEGI_36951 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 5.5e-13 80.5 146 33.6
Lj4g0021408 Lotus japonicus HOM05D003900 ORTHO05D015804 9.3e-13 79.7 128 38.3
CARHR141390 Cardamine hirsuta HOM05D003900 ORTHO05D005009 1.3e-11 75.9 108 35.2
SEGI_08205 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 1.8e-11 75.5 85 43.5
VMungo1127G1354 Vigna mungo HOM05D003900 ORTHO05D005009 2.3e-11 75.1 136 36.0
CAN.G874.71 Capsicum annuum HOM05D003900 ORTHO05D005009 1.5e-10 72.4 111 36.0
CARHR141380 Cardamine hirsuta HOM05D003900 ORTHO05D005009 1.9e-10 72.0 73 50.7
SEGI_03438 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 1.9e-10 72.0 91 40.7
SEGI_18390 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 2.5e-10 71.6 72 50.0
Aqoxy7G01324 Aquilegia oxysepala HOM05D003900 ORTHO05D005009 3.7e-09 67.8 190 33.7
SEGI_07366 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 3.7e-09 67.8 78 44.9
SEGI_34583 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 3.7e-09 67.8 78 44.9
SEGI_28461 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 4.8e-09 67.4 88 38.6
Aqoxy7G03291 Aquilegia oxysepala HOM05D003900 ORTHO05D016547 2.4e-08 65.1 138 31.9
CAN.G460.4 Capsicum annuum HOM05D003900 ORTHO05D005009 4.1e-08 64.3 115 33.0
Cpa.g.sc64.144 Carica papaya HOM05D000424 ORTHO05D000355 6.9e-08 63.5 100 29.0
SEGI_05946 Sequoiadendron giganteum HOM05D003900 ORTHO05D050885 6.9e-08 63.5 111 36.9
SEGI_07919 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 6.9e-08 63.5 68 45.6
Aqoxy4G01268 Aquilegia oxysepala HOM05D003900 ORTHO05D016547 1.5e-07 62.4 179 29.1
AL3G50640 Arabidopsis lyrata HOM05D007700 ORTHO05D009669 2.0e-07 62.0 215 22.3
CAN.G853.45 Capsicum annuum HOM05D003900 ORTHO05D005009 2.6e-07 61.6 96 34.4
CSS0037549 Camellia sinensis var. sinensis HOM05D000891 ORTHO05D000761 3.4e-07 61.2 225 24.4
Thhalv10022683m.g Eutrema salsugineum HOM05D007700 ORTHO05D009669 3.4e-07 61.2 224 22.8
CAN.G609.3 Capsicum annuum HOM05D003900 ORTHO05D005009 4.5e-07 60.8 124 33.9
FAN08G3007 Fragaria x ananassa HOM05D003900 ORTHO05D005009 4.5e-07 60.8 45 64.4
HanXRQChr07g0192051 Helianthus annuus HOM05D007700 ORTHO05D009669 7.7e-07 60.1 202 24.8
Atru.BG.208.p Acer truncatum HOM05D000424 ORTHO05D000355 1.0e-06 59.7 111 30.6
PSO170G6018 Papaver somniferum HOM05D007340 ORTHO05D008979 1.0e-06 59.7 168 23.8
TPR.G17150 Trifolium pratense HOM05D007212 ORTHO05D009094 1.0e-06 59.7 116 28.4
CDE05G1475 Ceratophyllum demersum HOM05D000424 ORTHO05D000355 1.3e-06 59.3 127 29.1
Lalb_Chr01g0001381 Lupinus albus HOM05D007212 ORTHO05D009094 1.3e-06 59.3 204 26.0
Sed0016136 Sechium edule HOM05D006694 ORTHO05D008240 1.3e-06 59.3 109 31.2
Zm00001eb280170 Zea mays HOM05D003900 ORTHO05D005009 1.3e-06 59.3 64 40.6
SEGI_36939 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 1.7e-06 58.9 65 40.0
HanXRQChr05g0154331 Helianthus annuus HOM05D005362 ORTHO05D006895 2.2e-06 58.5 215 25.6
Psat7g256640 Pisum sativum HOM05D007340 ORTHO05D008979 2.2e-06 58.5 186 28.5
CAN.G569.38 Capsicum annuum HOM05D007956 ORTHO05D010152 2.9e-06 58.2 115 31.3
SGA_v2.0_scaffold19G08853 Striga asiatica HOM05D000162 ORTHO05D000090 2.9e-06 58.2 124 28.2
Actinidia22918 Actinidia chinensis HOM05D007700 ORTHO05D009669 3.8e-06 57.8 198 24.7
Ca_19008_v3 Cicer arietinum L. HOM05D007212 ORTHO05D009094 3.8e-06 57.8 105 28.6
Lsat_1_v5_gn_5_23641 Lactuca sativa HOM05D005362 ORTHO05D006895 3.8e-06 57.8 213 25.4
Os10g0421800 Oryza sativa ssp. japonica HOM05D006008 ORTHO05D007334 3.8e-06 57.8 164 28.7
Cc00_g14260 Coffea canephora HOM05D007700 ORTHO05D009669 5.0e-06 57.4 205 21.5
Psat7g177640 Pisum sativum HOM05D007212 ORTHO05D009094 5.0e-06 57.4 105 29.5
Sopen02g027760 Solanum pennellii HOM05D007700 ORTHO05D009669 5.0e-06 57.4 225 22.2
Thecc.01G038900 Theobroma cacao HOM05D000891 ORTHO05D000761 5.0e-06 57.4 214 23.8
Hma1.2p1_0384F.1_g140800 Hydrangea macrophylla HOM05D005362 ORTHO05D006895 6.5e-06 57.0 172 27.3
PGSC0003DMG400040241 Solanum tuberosum HOM05D007700 ORTHO05D009669 6.5e-06 57.0 225 22.2
Zm00001eb373330 Zea mays HOM05D000424 ORTHO05D000355 8.5e-06 56.6 117 29.1


User provided reference genes

Program Settings