Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g096860 Medicago truncatula HOM05D008129 ORTHO05D010232 1.0e-84 316.6 155 100.0
Psat7g036080 Pisum sativum HOM05D008129 ORTHO05D010232 5.6e-62 241.1 155 79.4
TPR.G12796 Trifolium pratense HOM05D000268 ORTHO05D000261 3.7e-58 228.4 155 72.3
Lalb_Chr09g0333221 Lupinus albus HOM05D008129 ORTHO05D010232 1.3e-45 186.8 160 61.2
Phvul.002G286400 Phaseolus vulgaris HOM05D008129 ORTHO05D010232 7.8e-40 167.5 155 60.0
Gohir.D03G153100 Gossypium hirsutum HOM05D008129 ORTHO05D010232 4.6e-32 141.7 161 46.6
Gohir.A03G018500 Gossypium hirsutum HOM05D008129 ORTHO05D010232 8.7e-31 137.5 161 46.0
VMungo1215G1765 Vigna mungo HOM05D008129 ORTHO05D010232 8.7e-31 137.5 149 50.3
Phvul.002G155100 Phaseolus vulgaris HOM05D008129 ORTHO05D010232 3.3e-30 135.6 149 49.7
RcHm_v2.0_Chr7g0198961 Rosa chinensis HOM05D008129 ORTHO05D010232 3.3e-30 135.6 176 46.0
Glyma.11G025800 Glycine max HOM05D008129 ORTHO05D010232 4.3e-30 135.2 153 50.3
Thecc.03G273100 Theobroma cacao HOM05D008129 ORTHO05D010232 4.3e-30 135.2 173 45.7
Haze_08930 Corylus avellana HOM05D008129 ORTHO05D010232 7.4e-30 134.4 174 46.0
COL.COLO4_05253 Corchorus olitorius HOM05D008129 ORTHO05D010232 1.3e-29 133.7 167 44.3
QL12p017610 Quercus lobata HOM05D008129 ORTHO05D010232 1.6e-29 133.3 175 45.1
CSS0045994 Camellia sinensis var. sinensis HOM05D008129 ORTHO05D010232 2.1e-29 132.9 171 47.4
FvH4_5g01760 Fragaria vesca HOM05D008129 ORTHO05D010232 6.2e-29 131.3 176 44.9
FAN18G4443 Fragaria x ananassa HOM05D008129 ORTHO05D010232 6.2e-29 131.3 176 44.9
MD00G1110200 Malus domestica HOM05D008129 ORTHO05D010232 6.2e-29 131.3 179 42.5
QL12p017600 Quercus lobata HOM05D008129 ORTHO05D010232 6.2e-29 131.3 174 44.8
Ciclev10022388m.g Citrus clementina HOM05D008129 ORTHO05D010232 1.4e-28 130.2 161 42.9
FAN13G1875 Fragaria x ananassa HOM05D008129 ORTHO05D010232 4.0e-28 128.6 175 45.7
CiPaw.11G139400 Carya illinoinensis HOM05D008129 ORTHO05D010232 5.3e-28 128.3 179 43.0
Potri.001G108300 Populus trichocarpa HOM05D008129 ORTHO05D010232 5.3e-28 128.3 171 39.2
TAR629G0329 Trochodendron aralioides HOM05D008129 ORTHO05D010232 5.3e-28 128.3 168 45.8
Dinv38993 Davidia involucrata HOM05D008129 ORTHO05D010232 9.0e-28 127.5 189 41.8
FAN08G0538 Fragaria x ananassa HOM05D008129 ORTHO05D010232 1.5e-27 126.7 175 44.6
Gorai.003G160700 Gossypium raimondii HOM05D008129 ORTHO05D010232 2.6e-27 125.9 145 46.2
Cfa012120 Carpinus fangiana HOM05D008129 ORTHO05D010232 3.4e-27 125.6 174 43.1
CiPaw.12G097000 Carya illinoinensis HOM05D008129 ORTHO05D010232 3.4e-27 125.6 176 41.5
Sabra01G0081800 Salix brachista HOM05D008129 ORTHO05D010232 3.4e-27 125.6 171 40.4
FAN04G1130 Fragaria x ananassa HOM05D008129 ORTHO05D010232 7.6e-27 124.4 175 44.6
MD04G1064800 Malus domestica HOM05D008129 ORTHO05D010232 5.5e-25 118.2 147 42.2
Hma1.2p1_0514F.1_g169980 Hydrangea macrophylla HOM05D008129 ORTHO05D010232 9.3e-25 117.5 183 41.0
Lj2g0000650 Lotus japonicus HOM05D008129 ORTHO05D010232 2.1e-24 116.3 154 47.4
Manes.01G065300 Manihot esculenta HOM05D008129 ORTHO05D010232 7.9e-24 114.4 179 36.9
Prupe.5G093100 Prunus persica HOM05D008129 ORTHO05D010232 3.0e-23 112.5 169 43.8
MELO3C005638.2 Cucumis melo HOM05D008129 ORTHO05D010232 8.7e-23 110.9 156 40.4
AUR62010633 Chenopodium quinoa HOM05D008129 ORTHO05D010232 1.9e-22 109.8 186 37.6
Lj2P194T38 Lonicera japonica HOM05D008129 ORTHO05D010232 4.3e-22 108.6 170 40.0
CsaV3_5G003170 Cucumis sativus L. HOM05D008129 ORTHO05D010232 1.3e-21 107.1 154 40.3
CSS0008314 Camellia sinensis var. sinensis HOM05D008129 ORTHO05D010232 1.2e-19 100.5 195 35.9
Cc08_g14170 Coffea canephora HOM05D008129 ORTHO05D010232 1.5e-19 100.1 193 34.7
Oeu029783.1 Olea europaea HOM05D008129 ORTHO05D010232 3.4e-19 99.0 166 39.2
PGSC0003DMG400003052 Solanum tuberosum HOM05D008129 ORTHO05D010232 3.4e-19 99.0 176 33.0
Nitab4.5_0003924g0090 Nicotiana tabacum HOM05D008129 ORTHO05D010232 4.5e-19 98.6 176 36.4
Eucgr.D01909 Eucalyptus grandis HOM05D008129 ORTHO05D010232 1.0e-18 97.4 113 44.2
Migut.E01284 Erythranthe guttata HOM05D008129 ORTHO05D010232 1.7e-18 96.7 162 38.3
EL10Ac5g12748 Beta vulgaris HOM05D008129 ORTHO05D010232 2.9e-18 95.9 192 36.5
COL.COLO4_05254 Corchorus olitorius HOM05D008129 ORTHO05D010232 3.8e-18 95.5 150 35.3
SGA_v2.0_scaffold144G35967 Striga asiatica HOM05D008129 ORTHO05D010232 6.5e-18 94.7 171 37.4
ECA246G2221 Erigeron canadensis HOM05D008129 ORTHO05D010232 2.5e-17 92.8 147 36.7
Nn6g34205 Nelumbo nucifera HOM05D008129 ORTHO05D010232 3.2e-17 92.4 144 37.5
Solyc08g080530.1 Solanum lycopersicum HOM05D008129 ORTHO05D010232 7.1e-17 91.3 163 31.9
Rhsim07G0093300 Rhododendron simsii HOM05D008129 ORTHO05D010232 1.6e-16 90.1 147 41.5
Thecc.03G273000 Theobroma cacao HOM05D008129 ORTHO05D010232 7.9e-16 87.8 131 38.2
Gorai.003G160800 Gossypium raimondii HOM05D008129 ORTHO05D010232 2.3e-15 86.3 150 38.7
Gohir.D03G153200 Gossypium hirsutum HOM05D008129 ORTHO05D010232 1.9e-14 83.2 130 39.2
Eucgr.E00553 Eucalyptus grandis HOM05D008129 ORTHO05D010232 7.4e-14 81.3 140 34.3
Gohir.A03G018400 Gossypium hirsutum HOM05D008129 ORTHO05D010232 2.2e-13 79.7 150 36.0
TAR375G1113 Trochodendron aralioides HOM05D008129 ORTHO05D010232 1.4e-12 77.0 111 38.7
SGA_v2.0_scaffold385G50459 Striga asiatica HOM05D008129 ORTHO05D010232 1.8e-12 76.6 112 39.3
Oeu062744.1 Olea europaea HOM05D008129 ORTHO05D010232 9.0e-12 74.3 80 50.0
Dinv37674 Davidia involucrata HOM05D008129 ORTHO05D010232 1.0e-10 70.9 54 63.0
vmacro00355 Vaccinium macrocarpon HOM05D001075 ORTHO05D001779 5.0e-10 68.6 63 52.4
ClCG01G003050 Citrullus lanatus HOM05D008129 ORTHO05D010232 7.2e-09 64.7 155 31.6
AUR62017276 Chenopodium quinoa HOM05D008129 ORTHO05D010232 5.1e-07 58.5 81 40.7


User provided reference genes

Program Settings