Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g094680 Medicago truncatula HOM05D000076 ORTHO05D260553 2.4e-181 638.6 304 100.0
Ca_20433_v3 Cicer arietinum L. HOM05D000076 ORTHO05D006651 7.1e-45 185.3 352 37.2
Ca_30892_v3 Cicer arietinum L. HOM05D000076 ORTHO05D006651 7.1e-45 185.3 352 37.2
arahy.Tifrunner.gnm1.ann1.BAYB07 Arachis hypogaea HOM05D000076 ORTHO05D006651 1.9e-42 177.2 350 36.0
Medtr4g010990 Medicago truncatula HOM05D000076 ORTHO05D006651 6.2e-41 172.2 210 47.1
TPR.G38688 Trifolium pratense HOM05D000076 ORTHO05D006651 8.2e-41 171.8 210 47.1
Psat7g256240 Pisum sativum HOM05D000076 ORTHO05D006651 2.4e-40 170.2 210 46.7
Lj3g0009412 Lotus japonicus HOM05D000076 ORTHO05D006651 2.9e-38 163.3 208 46.2
Duzib235G1052 Durio zibethinus HOM05D000076 ORTHO05D006651 5.5e-37 159.1 209 44.0
VMungo0331G1252 Vigna mungo HOM05D000076 ORTHO05D006651 5.5e-37 159.1 208 44.7
arahy.Tifrunner.gnm1.ann1.PKV768 Arachis hypogaea HOM05D000076 ORTHO05D006651 1.2e-36 157.9 208 43.3
Lalb_Chr01g0012441 Lupinus albus HOM05D000076 ORTHO05D006651 2.1e-36 157.1 212 43.4
Phvul.010G154600 Phaseolus vulgaris HOM05D000076 ORTHO05D006651 2.1e-36 157.1 208 42.8
Glyma.07G031500 Glycine max HOM05D000076 ORTHO05D006651 2.7e-36 156.8 208 43.8
COL.COLO4_12922 Corchorus olitorius HOM05D000076 ORTHO05D006651 6.1e-36 155.6 209 42.6
Glyma.08G211300 Glycine max HOM05D000076 ORTHO05D006651 6.1e-36 155.6 208 43.8
PSO455G0226 Papaver somniferum HOM05D000076 ORTHO05D006651 1.0e-35 154.8 208 41.8
QL07p005211 Quercus lobata HOM05D000076 ORTHO05D006651 1.0e-35 154.8 208 41.8
PSO170G4244 Papaver somniferum HOM05D000076 ORTHO05D006651 1.3e-35 154.5 208 41.8
Thecc.06G069500 Theobroma cacao HOM05D000076 ORTHO05D006651 3.0e-35 153.3 209 42.1
Manes.04G115500 Manihot esculenta HOM05D000076 ORTHO05D006651 6.7e-35 152.1 208 41.8
MSTRG.11126 Avicennia marina HOM05D000076 ORTHO05D006651 8.7e-35 151.8 208 41.3
Gohir.A06G115000 Gossypium hirsutum HOM05D000076 ORTHO05D006651 8.7e-35 151.8 209 41.6
FvH4_6g30130 Fragaria vesca HOM05D000076 ORTHO05D006651 1.5e-34 151.0 208 42.3
CiPaw.01G245600 Carya illinoinensis HOM05D000076 ORTHO05D006651 2.5e-34 150.2 208 42.8
Gohir.D06G119800 Gossypium hirsutum HOM05D000076 ORTHO05D006651 2.5e-34 150.2 209 42.1
Gorai.010G137800 Gossypium raimondii HOM05D000076 ORTHO05D006651 2.5e-34 150.2 209 42.1
Lj5A69T35 Lonicera japonica HOM05D000076 ORTHO05D006651 2.5e-34 150.2 209 40.7
Prupe.3G082600 Prunus persica HOM05D000076 ORTHO05D006651 2.5e-34 150.2 208 43.3
MD17G1208100 Malus domestica HOM05D000076 ORTHO05D006651 3.3e-34 149.8 208 42.3
Potri.003G062600 Populus trichocarpa HOM05D000076 ORTHO05D006651 3.3e-34 149.8 208 40.9
Actinidia08805 Actinidia chinensis HOM05D000076 ORTHO05D006651 5.7e-34 149.1 203 41.9
FAN05G0493 Fragaria x ananassa HOM05D000076 ORTHO05D006651 7.4e-34 148.7 208 42.3
RcHm_v2.0_Chr2g0136181 Rosa chinensis HOM05D000076 ORTHO05D006651 7.4e-34 148.7 208 41.8
CSS0012985 Camellia sinensis var. sinensis HOM05D000076 ORTHO05D006651 9.7e-34 148.3 208 41.3
CAN.G407.99 Capsicum annuum HOM05D000076 ORTHO05D006651 9.7e-34 148.3 203 42.9
Manes.11G054200 Manihot esculenta HOM05D000076 ORTHO05D006651 9.7e-34 148.3 208 41.3
Rhsim12G0192300 Rhododendron simsii HOM05D000076 ORTHO05D006651 9.7e-34 148.3 203 42.4
Atru.chr1.3044 Acer truncatum HOM05D000076 ORTHO05D006651 1.3e-33 147.9 208 40.9
MELO3C023412.2 Cucumis melo HOM05D000076 ORTHO05D006651 1.3e-33 147.9 208 39.9
Dinv38105 Davidia involucrata HOM05D000076 ORTHO05D006651 1.3e-33 147.9 208 41.8
Sed0025008 Sechium edule HOM05D000076 ORTHO05D006651 1.3e-33 147.9 202 42.1
GSVIVG01017295001 Vitis vinifera HOM05D000076 ORTHO05D006651 1.3e-33 147.9 208 40.9
ECA232G2965 Erigeron canadensis HOM05D000076 ORTHO05D006651 1.6e-33 147.5 208 40.9
HanXRQChr09g0274961 Helianthus annuus HOM05D000076 ORTHO05D006651 1.6e-33 147.5 208 40.4
CiPaw.02G155700 Carya illinoinensis HOM05D000076 ORTHO05D006651 2.2e-33 147.1 208 41.3
Nitab4.5_0001764g0030 Nicotiana tabacum HOM05D000076 ORTHO05D006651 6.3e-33 145.6 208 41.3
Sabra03G0036400 Salix brachista HOM05D000076 ORTHO05D006651 6.3e-33 145.6 208 40.4
Ciclev10025636m.g Citrus clementina HOM05D000076 ORTHO05D006651 8.2e-33 145.2 208 40.4
CsaV3_7G032510 Cucumis sativus L. HOM05D003484 ORTHO05D006651 8.2e-33 145.2 208 39.9
Lsat_1_v5_gn_4_106080 Lactuca sativa HOM05D000076 ORTHO05D006651 8.2e-33 145.2 210 39.0
Peaxi162Scf00332g00759 Petunia axillaris HOM05D000076 ORTHO05D006651 8.2e-33 145.2 208 40.9
PGR102G0049 Punica granatum HOM05D000076 ORTHO05D006651 8.2e-33 145.2 208 40.9
Haze_16530 Corylus avellana HOM05D000076 ORTHO05D006651 1.1e-32 144.8 185 44.3
TWI75G0213 Tripterygium wilfordii HOM05D000076 ORTHO05D006651 1.4e-32 144.4 191 43.5
vmacro16906 Vaccinium macrocarpon HOM05D000076 ORTHO05D006651 1.4e-32 144.4 203 40.9
DCAR_025498 Daucus carota HOM05D000076 ORTHO05D006651 1.8e-32 144.1 208 41.3
PGSC0003DMG400000612 Solanum tuberosum HOM05D000076 ORTHO05D006651 4.1e-32 142.9 208 40.4
AUR62016360 Chenopodium quinoa HOM05D000076 ORTHO05D006651 5.3e-32 142.5 198 40.9
SGA_v2.0_scaffold5G02674 Striga asiatica HOM05D000076 ORTHO05D006651 5.3e-32 142.5 208 39.4
Aa31LG8G2920 Aethionema arabicum HOM05D000076 ORTHO05D006651 6.9e-32 142.1 191 43.5
Ah.01g020760 Amaranthus hybridus HOM05D000076 ORTHO05D006651 6.9e-32 142.1 352 31.2
EL10Ac9g21920 Beta vulgaris HOM05D000076 ORTHO05D006651 9.0e-32 141.7 193 42.0
Cc04_g04180 Coffea canephora HOM05D000076 ORTHO05D006651 9.0e-32 141.7 208 39.9
unitig_0.g1120 Utricularia gibba HOM05D000076 ORTHO05D006651 9.0e-32 141.7 208 41.3
BcaB06g25673 Brassica carinata HOM05D000076 ORTHO05D006651 1.2e-31 141.4 208 39.4
THA.LOC104815535 Tarenaya hassleriana HOM05D000076 ORTHO05D006651 1.2e-31 141.4 208 39.9
AUR62011541 Chenopodium quinoa HOM05D000076 ORTHO05D006651 2.0e-31 140.6 198 40.4
CDE04G3285 Ceratophyllum demersum HOM05D002557 ORTHO05D006651 2.6e-31 140.2 208 38.9
A06p01720 Brassica napus HOM05D000076 ORTHO05D006651 4.5e-31 139.4 190 42.6
BraA06t23390Z Brassica rapa HOM05D000076 ORTHO05D006651 4.5e-31 139.4 190 42.1
Sc12g0008690 Simmondsia chinensis HOM05D000076 ORTHO05D006651 4.5e-31 139.4 203 39.9
BraA05t22193Z Brassica rapa HOM05D000076 ORTHO05D006651 5.9e-31 139.0 209 39.2
Sp3g14030 Schrenkiella parvula HOM05D000076 ORTHO05D006651 7.7e-31 138.7 190 42.1
BcaC05g28944 Brassica carinata HOM05D007418 ORTHO05D006651 1.0e-30 138.3 209 38.8
BolC5t33820H Brassica oleracea HOM05D000076 ORTHO05D006651 1.0e-30 138.3 209 38.8
Thhalv10020754m.g Eutrema salsugineum HOM05D000076 ORTHO05D006651 1.0e-30 138.3 190 43.2
CARHR042750 Cardamine hirsuta HOM05D000076 ORTHO05D006651 1.3e-30 137.9 190 42.1
AT1G52630 Arabidopsis thaliana HOM05D000076 ORTHO05D006651 2.2e-30 137.1 190 43.2
A05p33720 Brassica napus HOM05D007418 ORTHO05D006651 2.2e-30 137.1 191 42.4
Migut.I00789 Erythranthe guttata HOM05D000076 ORTHO05D006651 2.9e-30 136.7 208 38.5
C05p50730 Brassica napus HOM05D007418 ORTHO05D006651 3.8e-30 136.3 191 41.9
SHI20604 Sapria himalayana HOM05D000076 ORTHO05D006651 8.5e-30 135.2 208 37.5
CiPaw.11G039200 Carya illinoinensis HOM05D000076 ORTHO05D006651 1.4e-29 134.4 178 43.8
C06p08060 Brassica napus HOM05D000076 ORTHO05D006651 3.2e-29 133.3 190 41.1
BolC6t35889H Brassica oleracea HOM05D000076 ORTHO05D006651 3.2e-29 133.3 190 41.1
CiPaw.03G185800 Carya illinoinensis HOM05D000076 ORTHO05D006651 3.2e-29 133.3 178 43.3
HPP92_025294 Vanilla planifolia HOM05D000076 ORTHO05D006651 3.2e-29 133.3 208 38.0
BcaC08g43438 Brassica carinata HOM05D000076 ORTHO05D006651 4.2e-29 132.9 190 41.1
CiPaw.03G141200 Carya illinoinensis HOM05D000076 ORTHO05D006651 7.2e-29 132.1 178 43.3
CiPaw.03G228600 Carya illinoinensis HOM05D000076 ORTHO05D006651 7.2e-29 132.1 176 43.8
ATR0807G240 Amborella trichopoda HOM05D000076 ORTHO05D006651 2.1e-28 130.6 208 38.5
CiPaw.07G036600 Carya illinoinensis HOM05D000076 ORTHO05D006651 6.7e-27 125.6 178 42.1
MD09G1220000 Malus domestica HOM05D000076 ORTHO05D006651 8.2e-25 118.6 205 39.5
Os08g0537900 Oryza sativa ssp. japonica HOM05D000076 ORTHO05D006651 1.8e-24 117.5 185 37.3
Zm00001eb037030 Zea mays HOM05D000076 ORTHO05D006651 9.1e-24 115.2 186 37.6
SMO116G0314 Selaginella moellendorffii HOM05D000076 ORTHO05D006651 2.5e-21 107.1 184 34.2
Nn8g39420 Nelumbo nucifera HOM05D000076 ORTHO05D006651 1.4e-19 101.3 83 59.0
AagrBONN_evm.TU.Sc2ySwM_369.259 Anthoceros agrestis HOM05D000076 ORTHO05D006651 2.3e-19 100.5 186 34.4
TAR383G0753 Trochodendron aralioides HOM05D000076 ORTHO05D006651 1.7e-17 94.4 83 55.4
Dinv30582 Davidia involucrata HOM05D000076 ORTHO05D006651 3.7e-17 93.2 83 55.4
Aqoxy7G02155 Aquilegia oxysepala HOM05D000076 ORTHO05D006651 4.8e-17 92.8 64 67.2
ClCG09G002820 Citrullus lanatus HOM05D000076 ORTHO05D006651 4.8e-17 92.8 83 51.8
RcHm_v2.0_Chr2g0136261 Rosa chinensis HOM05D000076 ORTHO05D006651 4.8e-17 92.8 83 55.4
Eucgr.F02536 Eucalyptus grandis HOM05D000076 ORTHO05D006651 8.2e-17 92.0 83 54.2
Sabra01G0140000 Salix brachista HOM05D000076 ORTHO05D006651 1.1e-16 91.7 83 53.0
Hma1.2p1_0515F.1_g170160 Hydrangea macrophylla HOM05D000076 ORTHO05D006651 1.4e-16 91.3 83 53.0
Oeu015242.1 Olea europaea HOM05D000076 ORTHO05D006651 1.4e-16 91.3 83 51.8
Eucgr.F02109 Eucalyptus grandis HOM05D000076 ORTHO05D006651 2.4e-16 90.5 83 53.0
Nn2g12010 Nelumbo nucifera HOM05D000076 ORTHO05D006651 5.3e-16 89.4 64 64.1
Solyc03g116550.4 Solanum lycopersicum HOM05D000076 ORTHO05D006651 5.3e-16 89.4 83 53.0
HPP92_025297 Vanilla planifolia HOM05D000076 ORTHO05D006651 5.3e-16 89.4 83 51.8
Nitab4.5_0010254g0070 Nicotiana tabacum HOM05D000076 ORTHO05D006651 7.0e-16 89.0 64 64.1
Sp1g39180 Schrenkiella parvula HOM05D000076 ORTHO05D006651 9.1e-16 88.6 65 66.2
Sopen03g035460 Solanum pennellii HOM05D000076 ORTHO05D006651 9.1e-16 88.6 83 53.0
CSS0004648 Camellia sinensis var. sinensis HOM05D000076 ORTHO05D006651 1.2e-15 88.2 83 51.8
AL1G60910 Arabidopsis lyrata HOM05D000076 ORTHO05D006651 2.0e-15 87.4 65 66.2
CDE02G3459 Ceratophyllum demersum HOM05D000076 ORTHO05D006651 4.5e-15 86.3 83 50.6
Carub.0001s4162 Capsella rubella HOM05D000076 ORTHO05D006651 7.7e-15 85.5 65 66.2
Hund00540 Selenicereus undatus HOM05D000076 ORTHO05D006651 1.0e-14 85.1 64 59.4
RcHm_v2.0_Chr2g0136251 Rosa chinensis HOM05D000076 ORTHO05D006651 1.7e-14 84.3 64 64.1
Thhalv10011490m.g Eutrema salsugineum HOM05D000076 ORTHO05D006651 3.8e-14 83.2 64 62.5
Rhsim01G0208700 Rhododendron simsii HOM05D000076 ORTHO05D006651 1.9e-13 80.9 59 64.4
BcaB06g25678 Brassica carinata HOM05D011137 ORTHO05D006651 2.1e-12 77.4 149 37.6
TWI12G0292 Tripterygium wilfordii HOM05D000076 ORTHO05D006651 3.6e-12 76.6 64 54.7
Potri.001G171500 Populus trichocarpa HOM05D000076 ORTHO05D006651 5.2e-11 72.8 64 51.6
Pp3c3_27530 Physcomitrium patens HOM05D000076 ORTHO05D006651 7.5e-10 68.9 188 26.1
CSS0019104 Camellia sinensis var. sinensis HOM05D000076 ORTHO05D006651 2.8e-09 67.0 46 63.0
Ah.09g231580 Amaranthus hybridus HOM05D000076 ORTHO05D001377 4.8e-09 66.2 160 31.9
CSS0022482 Camellia sinensis var. sinensis HOM05D000076 ORTHO05D006651 4.8e-09 66.2 46 63.0
CSS0042652 Camellia sinensis var. sinensis HOM05D000076 ORTHO05D006651 4.8e-09 66.2 46 63.0
CSS0010684 Camellia sinensis var. sinensis HOM05D000076 ORTHO05D006651 1.8e-08 64.3 46 60.9
BcaB06g25679 Brassica carinata HOM05D000076 ORTHO05D006651 2.4e-08 63.9 162 30.2
Dinv21010 Davidia involucrata HOM05D000076 ORTHO05D001377 7.7e-07 58.9 163 28.8
Nitab4.5_0004236g0070 Nicotiana tabacum HOM05D000076 ORTHO05D283100 8.5e-06 55.5 70 42.9


User provided reference genes

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