Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g094170 Medicago truncatula HOM05D005666 ORTHO05D007183 0.0e+00 1388.2 702 100.0
TPR.G14074 Trifolium pratense HOM05D005666 ORTHO05D007183 0.0e+00 1273.1 702 91.0
Ca_04159_v3 Cicer arietinum L. HOM05D005666 ORTHO05D007183 0.0e+00 1190.6 683 88.3
Glyma.05G003600 Glycine max HOM05D005666 ORTHO05D007183 0.0e+00 1133.6 707 81.5
Phvul.004G006900 Phaseolus vulgaris HOM05D005666 ORTHO05D007183 0.0e+00 1112.1 707 79.8
Lj2g0025454 Lotus japonicus HOM05D005666 ORTHO05D007183 0.0e+00 1109.4 691 82.3
VMungo0464G0315 Vigna mungo HOM05D005666 ORTHO05D007183 0.0e+00 1090.9 707 78.9
Lalb_Chr12g0199101 Lupinus albus HOM05D005666 ORTHO05D007183 1.9e-311 1072.0 700 78.1
Lalb_Chr13g0300491 Lupinus albus HOM05D005666 ORTHO05D007183 8.9e-309 1063.1 700 77.0
Psat1g054440 Pisum sativum HOM05D005666 ORTHO05D007183 1.4e-301 1039.3 606 86.8
Glyma.19G004600 Glycine max HOM05D005666 ORTHO05D007183 1.6e-297 1025.8 642 81.2
arahy.Tifrunner.gnm1.ann1.XQUA9L Arachis hypogaea HOM05D005666 ORTHO05D007183 4.5e-292 1007.7 697 73.9
arahy.Tifrunner.gnm1.ann1.D3X7TW Arachis hypogaea HOM05D005666 ORTHO05D007183 2.1e-278 962.2 679 73.2
QL02p074714 Quercus lobata HOM05D005666 ORTHO05D007183 3.4e-268 928.3 718 65.7
MD17G1027000 Malus domestica HOM05D005666 ORTHO05D007183 9.7e-263 910.2 712 64.6
Gorai.012G064300 Gossypium raimondii HOM05D005666 ORTHO05D007183 2.8e-262 908.7 709 65.4
CANSAT64G2468 Cannabis sativa HOM05D005666 ORTHO05D007183 5.3e-261 904.4 717 64.7
Gohir.D04G057600 Gossypium hirsutum HOM05D005666 ORTHO05D007183 9.1e-261 903.7 709 65.2
Atru.chr6.2394 Acer truncatum HOM05D005666 ORTHO05D007183 5.9e-260 901.0 714 65.3
MD09G1027000 Malus domestica HOM05D005666 ORTHO05D007183 2.2e-259 899.0 707 64.4
Duzib147G1248 Durio zibethinus HOM05D005666 ORTHO05D007183 1.8e-256 889.4 717 63.7
CsaV3_5G027130 Cucumis sativus L. HOM05D005666 ORTHO05D007183 7.4e-255 884.0 712 61.2
Potri.001G345200 Populus trichocarpa HOM05D005666 ORTHO05D007183 2.8e-254 882.1 710 63.1
Cpa.g.sc130.81 Carica papaya HOM05D005666 ORTHO05D007183 6.3e-254 880.9 709 63.6
GSVIVG01032407001 Vitis vinifera HOM05D005666 ORTHO05D007183 1.1e-253 880.2 701 64.9
TWI56G0621 Tripterygium wilfordii HOM05D005666 ORTHO05D007183 9.1e-253 877.1 710 63.0
Haze_10618 Corylus avellana HOM05D005666 ORTHO05D007183 1.6e-252 876.3 686 65.6
Sabra16G0224200 Salix brachista HOM05D005666 ORTHO05D007183 2.0e-252 875.9 708 63.1
MELO3C021580.2 Cucumis melo HOM05D005666 ORTHO05D007183 8.5e-251 870.5 712 60.7
COL.COLO4_29116 Corchorus olitorius HOM05D005666 ORTHO05D007183 1.5e-250 869.8 742 61.9
ClCG09G019260 Citrullus lanatus HOM05D005666 ORTHO05D007183 5.5e-250 867.8 712 60.8
Gohir.A05G355700 Gossypium hirsutum HOM05D005666 ORTHO05D007183 5.5e-250 867.8 689 65.0
RcHm_v2.0_Chr2g0172791 Rosa chinensis HOM05D005666 ORTHO05D007183 2.7e-249 865.5 742 61.1
Ciclev10014455m.g Citrus clementina HOM05D005666 ORTHO05D007183 1.0e-248 863.6 704 64.2
Actinidia35772 Actinidia chinensis HOM05D005666 ORTHO05D007183 1.8e-248 862.8 709 61.8
Thecc.04G017300 Theobroma cacao HOM05D005666 ORTHO05D007183 2.3e-248 862.4 715 62.5
FAN14G3607 Fragaria x ananassa HOM05D005666 ORTHO05D007183 3.0e-248 862.1 733 60.8
CiPaw.03G043800 Carya illinoinensis HOM05D005666 ORTHO05D007183 8.8e-248 860.5 708 62.1
FAN09G4801 Fragaria x ananassa HOM05D005666 ORTHO05D007183 5.7e-247 857.8 733 60.4
FAN02G4175 Fragaria x ananassa HOM05D005666 ORTHO05D007183 4.8e-246 854.7 742 60.0
FAN05G0542 Fragaria x ananassa HOM05D005666 ORTHO05D007183 1.4e-245 853.2 747 59.7
Sed0018750 Sechium edule HOM05D005666 ORTHO05D007183 7.0e-245 850.9 712 60.4
Manes.17G112200 Manihot esculenta HOM05D005666 ORTHO05D007183 1.6e-244 849.7 708 62.3
Rhsim10G0213300 Rhododendron simsii HOM05D005666 ORTHO05D007183 3.5e-244 848.6 704 61.2
Hma1.2p1_0999F.1_g246210 Hydrangea macrophylla HOM05D005666 ORTHO05D007183 4.5e-244 848.2 709 61.8
vmacro18287 Vaccinium macrocarpon HOM05D005666 ORTHO05D007183 5.9e-244 847.8 717 61.5
TAR371G0349 Trochodendron aralioides HOM05D005666 ORTHO05D007183 7.7e-244 847.4 713 61.2
Prupe.3G291700 Prunus persica HOM05D005666 ORTHO05D007183 2.2e-243 845.9 652 65.5
Eucgr.L01920 Eucalyptus grandis HOM05D005666 ORTHO05D007183 3.4e-239 832.0 705 59.6
Rhsim08G0049000 Rhododendron simsii HOM05D005666 ORTHO05D007183 2.9e-235 818.9 687 62.0
AUR62026681 Chenopodium quinoa HOM05D005666 ORTHO05D007183 1.4e-232 810.1 718 59.1
PGSC0003DMG400006959 Solanum tuberosum HOM05D005666 ORTHO05D007183 3.4e-231 805.4 705 59.0
CAN.G1057.3 Capsicum annuum HOM05D005666 ORTHO05D007183 4.4e-231 805.1 705 58.9
FvH4_6g51190 Fragaria vesca HOM05D005666 ORTHO05D007183 9.8e-231 803.9 683 60.5
Sopen02g016930 Solanum pennellii HOM05D005666 ORTHO05D007183 3.7e-230 802.0 717 58.3
PGR083G1531 Punica granatum HOM05D005666 ORTHO05D007183 8.3e-230 800.8 695 59.3
Sc03g0007440 Simmondsia chinensis HOM05D005666 ORTHO05D007183 2.4e-229 799.3 697 59.1
Cc07_g01670 Coffea canephora HOM05D005666 ORTHO05D007183 5.4e-229 798.1 707 58.8
Migut.K01395 Erythranthe guttata HOM05D005666 ORTHO05D007183 1.2e-228 797.0 711 58.8
Nitab4.5_0008365g0020 Nicotiana tabacum HOM05D005666 ORTHO05D007183 6.6e-227 791.2 709 58.7
Ah.05g168070 Amaranthus hybridus HOM05D005666 ORTHO05D007183 1.2e-225 786.9 700 57.7
CSS0006540 Camellia sinensis var. sinensis HOM05D005666 ORTHO05D007183 1.6e-225 786.6 651 62.4
Nn3g16730 Nelumbo nucifera HOM05D005666 ORTHO05D007183 8.9e-224 780.8 705 59.1
ECA246G2761 Erigeron canadensis HOM05D005666 ORTHO05D007183 1.5e-223 780.0 704 57.2
Hund22837 Selenicereus undatus HOM05D005666 ORTHO05D007183 3.4e-223 778.9 717 57.5
HanXRQChr15g0475291 Helianthus annuus HOM05D005666 ORTHO05D007183 1.1e-221 773.9 710 57.3
Lju41A42G100 Lonicera japonica HOM05D005666 ORTHO05D007183 1.4e-221 773.5 614 63.0
Aqoxy3G01199 Aquilegia oxysepala HOM05D005666 ORTHO05D007183 4.1e-221 771.9 717 55.9
SGA_v2.0_scaffold47G17503 Striga asiatica HOM05D005666 ORTHO05D007183 3.0e-219 765.8 705 57.2
AL6G30550 Arabidopsis lyrata HOM05D005666 ORTHO05D007183 9.5e-218 760.8 700 56.7
AT5G19130 Arabidopsis thaliana HOM05D005666 ORTHO05D007183 2.8e-217 759.2 700 56.9
DCAR_027499 Daucus carota HOM05D005666 ORTHO05D007183 1.1e-216 757.3 674 58.5
Thhalv10012831m.g Eutrema salsugineum HOM05D005666 ORTHO05D007183 1.8e-216 756.5 711 55.6
SalBow7G2092 Salvia bowleyana HOM05D005666 ORTHO05D007183 1.2e-215 753.8 708 55.6
Nitab4.5_0002529g0030 Nicotiana tabacum HOM05D005666 ORTHO05D007183 2.6e-215 752.7 699 56.8
BraA10t44118Z Brassica rapa HOM05D005666 ORTHO05D007183 4.4e-215 751.9 700 57.1
BcaB08g36600 Brassica carinata HOM05D005666 ORTHO05D007183 5.8e-215 751.5 700 56.6
C09p57110 Brassica napus HOM05D005666 ORTHO05D007183 2.9e-214 749.2 700 56.9
PSO017G6377 Papaver somniferum HOM05D005666 ORTHO05D007183 4.9e-214 748.4 709 54.6
Carub.0006s1746 Capsella rubella HOM05D005666 ORTHO05D007183 1.1e-213 747.3 700 56.6
HanXRQChr17g0548481 Helianthus annuus HOM05D005666 ORTHO05D007183 1.4e-213 746.9 702 55.6
BolC9t58577H Brassica oleracea HOM05D005666 ORTHO05D007183 1.9e-213 746.5 713 56.2
BcaC04g18594 Brassica carinata HOM05D005666 ORTHO05D007183 3.2e-213 745.7 700 56.7
Hma1.2p1_0999F.1_g246220 Hydrangea macrophylla HOM05D005666 ORTHO05D007183 3.2e-213 745.7 595 63.7
A10p20490 Brassica napus HOM05D005666 ORTHO05D007183 1.0e-211 740.7 700 56.4
Solyc02g067820.4 Solanum lycopersicum HOM05D005666 ORTHO05D007183 1.0e-211 740.7 687 57.5
Sp6g25230 Schrenkiella parvula HOM05D005666 ORTHO05D007183 1.5e-210 736.9 699 55.4
PSO478G0823 Papaver somniferum HOM05D005666 ORTHO05D007183 1.9e-210 736.5 709 54.2
Aa31LG11G15280 Aethionema arabicum HOM05D005666 ORTHO05D007183 3.3e-210 735.7 709 54.6
Lsat_1_v5_gn_0_47721 Lactuca sativa HOM05D005666 ORTHO05D007183 9.5e-210 734.2 682 57.0
Dinv33442 Davidia involucrata HOM05D005666 ORTHO05D007183 1.2e-209 733.8 658 59.0
Peaxi162Scf00080g00117 Petunia axillaris HOM05D005666 ORTHO05D007183 1.9e-205 719.9 685 55.2
MBI16_g31718_MAGBIO Magnolia biondii HOM05D005666 ORTHO05D007183 1.3e-203 713.8 705 54.9
EL10Ac1g01578 Beta vulgaris HOM05D005666 ORTHO05D007183 6.6e-203 711.4 738 53.3
FAN05G2905 Fragaria x ananassa HOM05D005666 ORTHO05D007183 8.4e-198 694.5 628 59.2
DCAR_011253 Daucus carota HOM05D005666 ORTHO05D007183 2.3e-195 686.4 775 49.4
THA.LOC104824726 Tarenaya hassleriana HOM05D005666 ORTHO05D007183 3.3e-194 682.6 701 54.2
CSS0011984 Camellia sinensis var. sinensis HOM05D005666 ORTHO05D007183 6.9e-192 674.9 591 60.2
CDE05G2460 Ceratophyllum demersum HOM05D005666 ORTHO05D007183 8.4e-190 667.9 718 49.9
Zm00001eb156580 Zea mays HOM05D005666 ORTHO05D007183 1.4e-189 667.2 715 50.9
Oeu048621.1 Olea europaea HOM05D005666 ORTHO05D007183 3.5e-188 662.5 650 54.9
unitig_747.g21863 Utricularia gibba HOM05D005666 ORTHO05D007183 8.7e-187 657.9 702 51.7
Eucgr.J02243 Eucalyptus grandis HOM05D005666 ORTHO05D007183 4.8e-169 599.0 515 60.2
HPP92_013793 Vanilla planifolia HOM05D005666 ORTHO05D007183 1.1e-168 597.8 697 47.9
ATR0686G164 Amborella trichopoda HOM05D005666 ORTHO05D007183 1.7e-166 590.5 616 50.0
vmacro06910 Vaccinium macrocarpon HOM05D005666 ORTHO05D007183 5.7e-146 522.3 520 56.5
CARHR193820 Cardamine hirsuta HOM05D005666 ORTHO05D007183 4.8e-145 519.2 497 53.7
CSS0008870 Camellia sinensis var. sinensis HOM05D005666 ORTHO05D007183 6.3e-145 518.8 425 64.2
Actinidia16943 Actinidia chinensis HOM05D005666 ORTHO05D007183 5.3e-144 515.8 631 48.2
BcaB05g23370 Brassica carinata HOM05D005666 ORTHO05D007183 4.2e-133 479.6 709 44.0
AUR62040590 Chenopodium quinoa HOM05D005666 ORTHO05D007183 5.7e-130 469.2 426 58.2
AagrBONN_evm.TU.Sc2ySwM_344.4982 Anthoceros agrestis HOM05D005666 ORTHO05D007183 1.1e-117 428.3 764 35.9
Mapoly0008s0195 Marchantia polymorpha HOM05D005666 ORTHO05D007183 3.6e-116 423.3 749 37.2
SMO134G0274 Selaginella moellendorffii HOM05D005666 ORTHO05D007183 2.5e-101 374.0 712 34.6
Pp3c22_6140 Physcomitrium patens HOM05D005666 ORTHO05D007183 4.1e-88 330.1 510 39.4
SEGI_39396 Sequoiadendron giganteum HOM05D005666 ORTHO05D007183 2.0e-82 311.2 330 49.1
ATR0762G005 Amborella trichopoda HOM05D005666 ORTHO05D007183 2.9e-81 307.4 342 47.1
TPR.G20372 Trifolium pratense HOM05D005666 ORTHO05D007183 4.2e-80 303.5 167 92.2
THA.LOC109116951 Tarenaya hassleriana HOM05D005666 ORTHO05D007183 3.9e-78 297.0 293 54.6
SHI16418 Sapria himalayana HOM05D005666 ORTHO05D007183 2.5e-69 267.7 279 50.9
ATR0919G001 Amborella trichopoda HOM05D005666 ORTHO05D007183 2.4e-59 234.6 249 49.0
Os01g0682200 Oryza sativa ssp. japonica HOM05D005666 ORTHO05D007183 6.7e-54 216.5 251 45.0
SHI16416 Sapria himalayana HOM05D005666 ORTHO05D007183 3.7e-52 210.7 272 44.9
CBR_g49194 Chara braunii HOM05D005666 ORTHO05D007183 7.2e-40 169.9 433 30.3
THA.LOC104820325 Tarenaya hassleriana HOM05D005666 ORTHO05D007183 1.4e-30 139.0 149 52.3
MCO10G117 Micromonas commoda HOM05D005666 ORTHO05D007183 2.6e-29 134.8 487 26.5
Oeu030978.1 Olea europaea HOM05D005666 ORTHO05D007183 3.5e-26 124.4 130 50.8
A02p05250 Brassica napus HOM05D005666 ORTHO05D007183 4.4e-21 107.5 292 29.1
CiPaw.04G028500 Carya illinoinensis HOM05D005666 ORTHO05D007183 2.9e-17 94.7 64 73.4
Oeu048620.1 Olea europaea HOM05D005666 ORTHO05D007183 1.1e-16 92.8 82 56.1
BolC2t06938H Brassica oleracea HOM05D005666 ORTHO05D043081 1.7e-12 79.0 68 61.8
Thecc.05G064500 Theobroma cacao HOM05D005666 ORTHO05D007183 4.1e-11 74.3 87 42.5
SEGI_03684 Sequoiadendron giganteum HOM05D005666 ORTHO05D007183 1.9e-08 65.5 83 49.4
FvH4_6g51172 Fragaria vesca HOM05D005666 ORTHO05D007183 6.8e-06 57.0 52 59.6


User provided reference genes

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