Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g093950 Medicago truncatula HOM05D003476 ORTHO05D004057 1.1e-32 142.9 80 100.0
Medtr5g081900 Medicago truncatula HOM05D003476 ORTHO05D004057 1.1e-08 63.2 42 85.7
TPR.G8041 Trifolium pratense HOM05D003476 ORTHO05D004057 5.3e-08 60.8 42 78.6
LjContig00357g0022102 Lotus japonicus HOM05D003476 ORTHO05D004057 9.1e-08 60.1 44 75.0
Ca_05932_v3 Cicer arietinum L. HOM05D003476 ORTHO05D004057 1.2e-07 59.7 44 72.7
Gohir.A10G229700 Gossypium hirsutum HOM05D003476 ORTHO05D004057 1.2e-07 59.7 42 71.4
Cc02_g06900 Coffea canephora HOM05D003476 ORTHO05D004057 1.6e-07 59.3 41 73.2
Glyma.02G254500 Glycine max HOM05D003476 ORTHO05D004057 1.6e-07 59.3 44 70.5
arahy.Tifrunner.gnm1.ann1.7TWC5I Arachis hypogaea HOM05D003476 ORTHO05D004057 2.0e-07 58.9 44 70.5
arahy.Tifrunner.gnm1.ann1.C86U5P Arachis hypogaea HOM05D003476 ORTHO05D004057 2.0e-07 58.9 44 70.5
LjContig00357g0025168 Lotus japonicus HOM05D003476 ORTHO05D004057 2.0e-07 58.9 44 70.5
CANSAT56G1382 Cannabis sativa HOM05D003476 ORTHO05D004057 2.7e-07 58.5 43 74.4
ECA238G4332 Erigeron canadensis HOM05D003476 ORTHO05D004057 3.5e-07 58.2 44 68.2
VMungo0647G2503 Vigna mungo HOM05D003476 ORTHO05D004057 3.5e-07 58.2 44 68.2
Phvul.008G226300 Phaseolus vulgaris HOM05D003476 ORTHO05D004057 4.5e-07 57.8 44 68.2
unitig_747.g21420 Utricularia gibba HOM05D003476 ORTHO05D004057 4.5e-07 57.8 41 73.2
COL.COLO4_25658 Corchorus olitorius HOM05D003476 ORTHO05D004057 5.9e-07 57.4 43 69.8
Eucgr.G03033 Eucalyptus grandis HOM05D003476 ORTHO05D004057 5.9e-07 57.4 44 68.2
Thecc.10G026100 Theobroma cacao HOM05D003476 ORTHO05D004057 5.9e-07 57.4 43 69.8
Actinidia13919 Actinidia chinensis HOM05D003476 ORTHO05D004057 7.7e-07 57.0 43 72.1
Oeu039001.1 Olea europaea HOM05D003476 ORTHO05D004057 7.7e-07 57.0 43 69.8
Duzib128G2055 Durio zibethinus HOM05D003476 ORTHO05D004057 1.0e-06 56.6 43 69.8
SGA_v2.0_scaffold76G25080 Striga asiatica HOM05D003476 ORTHO05D004057 1.0e-06 56.6 43 72.1
Glyma.14G061900 Glycine max HOM05D003476 ORTHO05D004057 1.3e-06 56.2 44 68.2
HanXRQChr12g0370541 Helianthus annuus HOM05D003476 ORTHO05D004057 1.3e-06 56.2 43 67.4
Prupe.2G246300 Prunus persica HOM05D003476 ORTHO05D004057 1.3e-06 56.2 43 69.8
RcHm_v2.0_Chr1g0369421 Rosa chinensis HOM05D003476 ORTHO05D004057 1.3e-06 56.2 43 69.8
TWI53G1335 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 1.3e-06 56.2 41 70.7
Actinidia00934 Actinidia chinensis HOM05D003476 ORTHO05D004057 1.7e-06 55.8 43 69.8
MSTRG.8311 Avicennia marina HOM05D003476 ORTHO05D004057 1.7e-06 55.8 43 67.4
Oeu039509.1 Olea europaea HOM05D003476 ORTHO05D004057 1.7e-06 55.8 43 69.8
PGR142G4151 Punica granatum HOM05D003476 ORTHO05D004057 1.7e-06 55.8 43 67.4
SalBow6G1938 Salvia bowleyana HOM05D003476 ORTHO05D004057 1.7e-06 55.8 43 67.4
CiPaw.01G295800 Carya illinoinensis HOM05D003476 ORTHO05D004057 2.2e-06 55.5 43 67.4
Migut.F01426 Erythranthe guttata HOM05D003476 ORTHO05D004057 2.2e-06 55.5 43 74.4
FvH4_7g24030 Fragaria vesca HOM05D003476 ORTHO05D004057 2.2e-06 55.5 43 65.1
FAN01G1497 Fragaria x ananassa HOM05D003476 ORTHO05D004057 2.2e-06 55.5 43 65.1
FAN03G0251 Fragaria x ananassa HOM05D003476 ORTHO05D004057 2.2e-06 55.5 43 65.1
FAN06G4561 Fragaria x ananassa HOM05D003476 ORTHO05D004057 2.2e-06 55.5 43 65.1
Sed0008497 Sechium edule HOM05D003476 ORTHO05D004057 2.2e-06 55.5 44 63.6
TWI73G1058 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 2.2e-06 55.5 41 73.2
CiPaw.02G189900 Carya illinoinensis HOM05D003476 ORTHO05D004057 2.9e-06 55.1 43 65.1
Gohir.D10G243900 Gossypium hirsutum HOM05D003476 ORTHO05D004057 2.9e-06 55.1 43 69.8
Gorai.011G280300 Gossypium raimondii HOM05D003476 ORTHO05D004057 2.9e-06 55.1 43 69.8
TWI09G0086 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 2.9e-06 55.1 41 70.7
TWI23G0971 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 2.9e-06 55.1 41 70.7
FAN15G1698 Fragaria x ananassa HOM05D003476 ORTHO05D004057 3.8e-06 54.7 43 65.1
MD01G1147400 Malus domestica HOM05D003476 ORTHO05D004057 3.8e-06 54.7 41 68.3
Sed0009203 Sechium edule HOM05D003476 ORTHO05D004057 3.8e-06 54.7 42 66.7
GSVIVG01016365001 Vitis vinifera HOM05D003476 ORTHO05D004057 3.8e-06 54.7 43 65.1
EL10Ac2g04131 Beta vulgaris HOM05D003476 ORTHO05D004057 5.0e-06 54.3 41 65.9
CSS0000698 Camellia sinensis var. sinensis HOM05D003476 ORTHO05D004057 5.0e-06 54.3 41 68.3
Lsat_1_v5_gn_5_2880 Lactuca sativa HOM05D003476 ORTHO05D004057 5.0e-06 54.3 43 62.8
TWI73G1048 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 6.5e-06 53.9 41 70.7
Aqoxy214s003 Aquilegia oxysepala HOM05D003476 ORTHO05D004057 8.5e-06 53.5 41 63.4
DCAR_011789 Daucus carota HOM05D003476 ORTHO05D004057 8.5e-06 53.5 41 68.3
MD08G1058400 Malus domestica HOM05D003476 ORTHO05D004057 8.5e-06 53.5 43 65.1
MD15G1038100 Malus domestica HOM05D003476 ORTHO05D004057 8.5e-06 53.5 43 65.1
Manes.10G017601 Manihot esculenta HOM05D003476 ORTHO05D004057 8.5e-06 53.5 44 68.2
vmacro10062 Vaccinium macrocarpon HOM05D003476 ORTHO05D004057 8.5e-06 53.5 43 67.4


User provided reference genes

Program Settings