Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g093750 Medicago truncatula HOM05D007927 ORTHO05D010029 1.5e-124 449.5 230 100.0
TPR.G37352 Trifolium pratense HOM05D007927 ORTHO05D010029 5.5e-106 387.9 234 86.3
Psat7g045960 Pisum sativum HOM05D007927 ORTHO05D010029 3.9e-104 381.7 234 86.8
Glyma.05G191900 Glycine max HOM05D007927 ORTHO05D010029 1.4e-88 330.1 243 73.7
VMungo0251G0724 Vigna mungo HOM05D007927 ORTHO05D010029 1.8e-88 329.7 242 74.0
Lj4g0020524 Lotus japonicus HOM05D007927 ORTHO05D010029 2.6e-87 325.9 230 75.7
Phvul.002G272300 Phaseolus vulgaris HOM05D007927 ORTHO05D010029 3.3e-87 325.5 237 74.3
Lalb_Chr07g0184391 Lupinus albus HOM05D007927 ORTHO05D010029 2.2e-78 296.2 231 71.4
Ca_17635_v3 Cicer arietinum L. HOM05D007927 ORTHO05D010029 4.8e-78 295.0 170 90.6
Atru.chr4.915 Acer truncatum HOM05D007927 ORTHO05D010029 1.2e-76 290.4 233 66.1
CsaV3_2G019410 Cucumis sativus L. HOM05D007927 ORTHO05D010029 5.0e-75 285.0 219 69.4
Ciclev10002360m.g Citrus clementina HOM05D007927 ORTHO05D010029 4.2e-74 282.0 223 65.5
ClCG02G000450 Citrullus lanatus HOM05D007927 ORTHO05D010029 1.2e-73 280.4 213 69.5
CiPaw.04G081700 Carya illinoinensis HOM05D007927 ORTHO05D010029 6.8e-72 274.6 233 63.5
Hma1.2p1_0476F.1_g160770 Hydrangea macrophylla HOM05D007927 ORTHO05D010029 8.8e-72 274.2 238 63.9
QL10p043457 Quercus lobata HOM05D007927 ORTHO05D010029 1.2e-71 273.9 245 61.2
Duzib264G0901 Durio zibethinus HOM05D007927 ORTHO05D010029 2.0e-71 273.1 248 60.9
TAR628G1503 Trochodendron aralioides HOM05D007927 ORTHO05D010029 2.6e-71 272.7 231 65.8
COL.COLO4_35756 Corchorus olitorius HOM05D007927 ORTHO05D010029 1.3e-70 270.4 241 63.1
Manes.13G085601 Manihot esculenta HOM05D007927 ORTHO05D010029 2.2e-70 269.6 201 69.7
PGR102G3035 Punica granatum HOM05D007927 ORTHO05D010029 2.2e-70 269.6 233 64.8
Aqoxy5G02324 Aquilegia oxysepala HOM05D007927 ORTHO05D010029 4.8e-70 268.5 230 64.8
Prupe.4G271700 Prunus persica HOM05D007927 ORTHO05D010029 1.4e-69 266.9 249 60.6
Dinv07117 Davidia involucrata HOM05D007927 ORTHO05D010029 1.8e-69 266.5 241 63.1
Thecc.01G133600 Theobroma cacao HOM05D007927 ORTHO05D010029 2.4e-69 266.2 237 62.9
TWI75G1488 Tripterygium wilfordii HOM05D007927 ORTHO05D010029 7.0e-69 264.6 231 63.2
Dinv24372 Davidia involucrata HOM05D007927 ORTHO05D010029 9.1e-69 264.2 236 60.6
vmacro18670 Vaccinium macrocarpon HOM05D007927 ORTHO05D010029 2.0e-68 263.1 211 65.9
FAN28G0845 Fragaria x ananassa HOM05D007927 ORTHO05D010029 4.5e-68 261.9 236 61.4
Nn1g06275 Nelumbo nucifera HOM05D007927 ORTHO05D010029 4.5e-68 261.9 220 63.2
CSS0028810 Camellia sinensis var. sinensis HOM05D007927 ORTHO05D010029 5.9e-68 261.5 189 72.0
MD01G1005400 Malus domestica HOM05D007927 ORTHO05D010029 5.9e-68 261.5 239 59.8
GSVIVG01026475001 Vitis vinifera HOM05D007927 ORTHO05D010029 5.9e-68 261.5 155 83.9
FvH4_1g24440 Fragaria vesca HOM05D007927 ORTHO05D010029 3.8e-67 258.8 195 69.2
FAN19G2953 Fragaria x ananassa HOM05D007927 ORTHO05D010029 3.8e-67 258.8 195 69.2
Rhsim08G0002700 Rhododendron simsii HOM05D007927 ORTHO05D010029 5.0e-67 258.5 194 70.1
Eucgr.J01289 Eucalyptus grandis HOM05D007927 ORTHO05D010029 6.6e-67 258.1 234 60.7
MBI03_g42544_MAGBIO Magnolia biondii HOM05D007927 ORTHO05D010029 8.6e-67 257.7 219 64.4
MBI03_g37385_MAGBIO Magnolia biondii HOM05D007927 ORTHO05D010029 1.1e-66 257.3 219 64.4
Gohir.D09G003800 Gossypium hirsutum HOM05D007927 ORTHO05D010029 4.2e-66 255.4 229 61.6
DCAR_014334 Daucus carota HOM05D007927 ORTHO05D010029 9.5e-66 254.2 189 69.8
Gohir.A09G004300 Gossypium hirsutum HOM05D007927 ORTHO05D010029 9.5e-66 254.2 229 61.1
Potri.005G063600 Populus trichocarpa HOM05D007927 ORTHO05D010029 9.5e-66 254.2 159 77.4
RcHm_v2.0_Chr2g0121541 Rosa chinensis HOM05D007927 ORTHO05D010029 1.2e-65 253.8 196 67.3
CDE02G1961 Ceratophyllum demersum HOM05D007927 ORTHO05D010029 2.8e-65 252.7 225 63.1
Haze_25255 Corylus avellana HOM05D007927 ORTHO05D010029 2.8e-65 252.7 241 58.5
ATR0584G243 Amborella trichopoda HOM05D007927 ORTHO05D010029 4.7e-65 251.9 227 61.2
Actinidia01389 Actinidia chinensis HOM05D007927 ORTHO05D010029 1.4e-64 250.4 152 82.9
Lj4A837T13 Lonicera japonica HOM05D007927 ORTHO05D010029 1.4e-64 250.4 250 57.6
Lsat_1_v5_gn_5_69000 Lactuca sativa HOM05D007927 ORTHO05D010029 1.8e-64 250.0 236 60.2
Cfa002902 Carpinus fangiana HOM05D007927 ORTHO05D001116 2.3e-64 249.6 163 74.8
HanXRQChr12g0380561 Helianthus annuus HOM05D007927 ORTHO05D010029 6.8e-64 248.1 234 59.4
FAN23G1573 Fragaria x ananassa HOM05D007927 ORTHO05D010029 9.8e-63 244.2 221 60.2
Cpa.g.sc42.162 Carica papaya HOM05D007927 ORTHO05D010029 8.3e-62 241.1 232 57.8
FAN26G1905 Fragaria x ananassa HOM05D007927 ORTHO05D010029 2.4e-61 239.6 284 50.7
MELO3C023232.2 Cucumis melo HOM05D007927 ORTHO05D010029 1.2e-60 237.3 194 67.0
ECA233G3055 Erigeron canadensis HOM05D007927 ORTHO05D010029 1.2e-60 237.3 237 57.0
Gorai.006G005200 Gossypium raimondii HOM05D007927 ORTHO05D010029 1.0e-59 234.2 217 59.9
Os12g0189700 Oryza sativa ssp. japonica HOM05D007927 ORTHO05D010029 7.3e-58 228.0 155 72.3
SEGI_35752 Sequoiadendron giganteum HOM05D007927 ORTHO05D010029 4.4e-55 218.8 228 54.8
Pp3c24_20210 Physcomitrium patens HOM05D007927 ORTHO05D010029 1.6e-49 200.3 155 63.2
AagrBONN_evm.TU.Sc2ySwM_344.4939 Anthoceros agrestis HOM05D007927 ORTHO05D010029 8.0e-49 198.0 157 62.4
Mapoly0115s0058 Marchantia polymorpha HOM05D007927 ORTHO05D010029 2.3e-43 179.9 152 57.9
Sabra07G0086100 Salix brachista HOM05D007927 ORTHO05D010029 7.3e-42 174.9 98 84.7
Lj4C838G8 Lonicera japonica HOM05D007927 ORTHO05D010029 7.1e-37 158.3 250 43.2
Sabra05G0052800 Salix brachista HOM05D007927 ORTHO05D010029 2.5e-34 149.8 241 42.3
SEGI_09554 Sequoiadendron giganteum HOM05D007927 ORTHO05D010029 1.2e-31 141.0 114 66.7
FAN23G0137 Fragaria x ananassa HOM05D007927 ORTHO05D010029 5.3e-24 115.5 135 48.9
FAN19G2631 Fragaria x ananassa HOM05D007927 ORTHO05D010029 1.5e-23 114.0 136 48.5
Cre01.g055151 Chlamydomonas reinhardtii HOM05D007927 ORTHO05D010029 1.5e-18 97.4 134 38.1
Gohir.D03G074800 Gossypium hirsutum HOM05D007927 ORTHO05D010029 9.9e-15 84.7 56 71.4
Gohir.D06G120200 Gossypium hirsutum HOM05D005170 ORTHO05D010029 2.2e-14 83.6 50 78.0
Gohir.D01G107700 Gossypium hirsutum HOM05D005170 ORTHO05D010029 2.9e-14 83.2 50 76.0
Gohir.D09G047700 Gossypium hirsutum HOM05D007927 ORTHO05D010029 2.9e-14 83.2 106 49.1
Gorai.010G138300 Gossypium raimondii HOM05D007927 ORTHO05D010029 8.4e-14 81.6 48 77.1
FvH4_1g24060 Fragaria vesca HOM05D007927 ORTHO05D010029 9.3e-13 78.2 58 69.0
Sabra07G0086200 Salix brachista HOM05D007927 ORTHO05D010029 2.1e-12 77.0 150 37.3
Gorai.009G413100 Gossypium raimondii HOM05D007927 ORTHO05D010029 2.7e-12 76.6 48 72.9
Gohir.D04G109100 Gossypium hirsutum HOM05D007927 ORTHO05D010029 8.7e-11 71.6 47 72.3
Pp3c2_6800 Physcomitrium patens HOM05D019817 ORTHO05D016515 7.6e-07 58.5 118 29.7
PRCOL_00005335 Prasinoderma coloniale HOM05D016266 ORTHO05D019595 1.3e-06 57.8 94 30.9
Mapoly0178s0020 Marchantia polymorpha HOM05D019817 ORTHO05D016515 1.7e-06 57.4 92 34.8
SEGI_14611 Sequoiadendron giganteum HOM05D019817 ORTHO05D016515 1.7e-06 57.4 119 28.6
Gohir.D11G266900 Gossypium hirsutum HOM05D005170 ORTHO05D006985 4.9e-06 55.8 29 89.7


User provided reference genes

Program Settings