Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g092180 Medicago truncatula HOM05D005449 ORTHO05D006916 7.1e-75 283.9 146 100.0
Ca_17681_v3 Cicer arietinum L. HOM05D005449 ORTHO05D006916 6.0e-66 254.2 146 90.4
Ca_29605_v3 Cicer arietinum L. HOM05D005449 ORTHO05D006916 6.0e-66 254.2 146 90.4
Lj4g0006553 Lotus japonicus HOM05D005449 ORTHO05D006916 7.3e-64 247.3 146 87.0
TPR.G2165 Trifolium pratense HOM05D005449 ORTHO05D006916 1.2e-61 240.0 146 86.3
Glyma.05G185600 Glycine max HOM05D005449 ORTHO05D006916 4.5e-61 238.0 146 86.3
Phvul.002G266700 Phaseolus vulgaris HOM05D005449 ORTHO05D006916 9.3e-59 230.3 146 83.6
Psat7g049640 Pisum sativum HOM05D005449 ORTHO05D006916 3.0e-57 225.3 149 82.6
Glyma.08G143600 Glycine max HOM05D005449 ORTHO05D006916 1.5e-56 223.0 146 80.8
Cfa005902 Carpinus fangiana HOM05D005449 ORTHO05D006916 4.0e-54 214.9 146 76.7
arahy.Tifrunner.gnm1.ann1.X8E93Z Arachis hypogaea HOM05D005449 ORTHO05D006916 9.9e-53 210.3 147 77.6
arahy.Tifrunner.gnm1.ann1.YB8ZH2 Arachis hypogaea HOM05D005449 ORTHO05D006916 9.9e-53 210.3 147 77.6
QL12p028306 Quercus lobata HOM05D005449 ORTHO05D006916 1.3e-52 209.9 145 74.5
Hma1.2p1_1986F.1_g310070 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 2.4e-51 205.7 146 74.7
Hma1.2p1_2044F.1_g312372 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 2.4e-51 205.7 146 74.7
TAR636G0282 Trochodendron aralioides HOM05D005449 ORTHO05D006916 4.2e-51 204.9 146 74.0
VMungo0251G2862 Vigna mungo HOM05D000587 ORTHO05D000929 4.2e-51 204.9 146 76.0
Dinv33060 Davidia involucrata HOM05D005449 ORTHO05D006916 7.1e-51 204.1 146 73.3
Lalb_Chr03g0036381 Lupinus albus HOM05D005449 ORTHO05D006916 2.1e-50 202.6 148 75.0
CiPaw.08G094600 Carya illinoinensis HOM05D005449 ORTHO05D006916 2.7e-50 202.2 146 71.9
CSS0004919 Camellia sinensis var. sinensis HOM05D005449 ORTHO05D006916 3.5e-50 201.8 146 71.9
Prupe.8G140700 Prunus persica HOM05D005449 ORTHO05D006916 3.5e-50 201.8 147 72.8
CiPaw.07G110200 Carya illinoinensis HOM05D005449 ORTHO05D006916 1.3e-49 199.9 146 74.0
Cc01_g20940 Coffea canephora HOM05D005449 ORTHO05D006916 2.3e-49 199.1 147 74.1
DCAR_002842 Daucus carota HOM05D005449 ORTHO05D006916 2.3e-49 199.1 146 73.3
Lsat_1_v5_gn_8_164201 Lactuca sativa HOM05D005449 ORTHO05D006916 3.0e-49 198.7 145 75.2
Rhsim06G0059700 Rhododendron simsii HOM05D005449 ORTHO05D006916 3.9e-49 198.4 139 74.8
MD05G1096300 Malus domestica HOM05D005449 ORTHO05D006916 1.1e-48 196.8 146 72.6
CsaV3_4G000480 Cucumis sativus L. HOM05D005449 ORTHO05D006916 1.5e-48 196.4 146 71.2
Ah.08g213380 Amaranthus hybridus HOM05D005449 ORTHO05D006916 4.3e-48 194.9 146 68.5
Sopen08g023260 Solanum pennellii HOM05D005449 ORTHO05D006916 7.4e-48 194.1 138 75.4
Dinv44016 Davidia involucrata HOM05D005449 ORTHO05D006916 1.3e-47 193.4 146 71.9
Solyc08g074670.3 Solanum lycopersicum HOM05D005449 ORTHO05D006916 1.3e-47 193.4 138 74.6
PGSC0003DMG400018921 Solanum tuberosum HOM05D005449 ORTHO05D006916 1.6e-47 193.0 138 74.6
MELO3C017987.2 Cucumis melo HOM05D005449 ORTHO05D006916 3.7e-47 191.8 146 69.2
Sed0024679 Sechium edule HOM05D005449 ORTHO05D006916 3.7e-47 191.8 146 69.9
TWI14G0435 Tripterygium wilfordii HOM05D005449 ORTHO05D006916 6.2e-47 191.0 137 75.2
Potri.014G127900 Populus trichocarpa HOM05D005449 ORTHO05D006916 8.2e-47 190.7 151 70.9
Aqoxy1G00207 Aquilegia oxysepala HOM05D005449 ORTHO05D006916 1.1e-46 190.3 146 69.2
CAN.G857.16 Capsicum annuum HOM05D005449 ORTHO05D006916 1.1e-46 190.3 138 73.9
HanXRQChr06g0163691 Helianthus annuus HOM05D005449 ORTHO05D006916 1.1e-46 190.3 120 80.8
Nn3g21512 Nelumbo nucifera HOM05D005449 ORTHO05D006916 1.8e-46 189.5 146 71.2
Eucgr.F02473 Eucalyptus grandis HOM05D005449 ORTHO05D006916 2.4e-46 189.1 146 69.9
MSTRG.21637 Avicennia marina HOM05D005449 ORTHO05D006916 3.1e-46 188.7 146 71.2
Migut.D00146 Erythranthe guttata HOM05D005449 ORTHO05D006916 3.1e-46 188.7 135 75.6
RcHm_v2.0_Chr6g0252971 Rosa chinensis HOM05D005449 ORTHO05D006916 3.1e-46 188.7 139 71.9
CANSAT25G1565 Cannabis sativa HOM05D005449 ORTHO05D006916 4.0e-46 188.3 146 69.2
Ciclev10022754m.g Citrus clementina HOM05D005449 ORTHO05D006916 4.0e-46 188.3 134 76.1
Duzib138G1099 Durio zibethinus HOM05D005449 ORTHO05D006916 4.0e-46 188.3 134 74.6
SGA_v2.0_scaffold1G00359 Striga asiatica HOM05D005449 ORTHO05D006916 4.0e-46 188.3 146 71.2
FAN20G1025 Fragaria x ananassa HOM05D005449 ORTHO05D006916 5.3e-46 188.0 139 71.2
FAN27G2298 Fragaria x ananassa HOM05D005449 ORTHO05D006916 5.3e-46 188.0 139 71.2
FAN15G2928 Fragaria x ananassa HOM05D005449 ORTHO05D006916 6.9e-46 187.6 133 74.4
RcHm_v2.0_Chr6g0252941 Rosa chinensis HOM05D005449 ORTHO05D006916 6.9e-46 187.6 139 72.7
FvH4_2g03920 Fragaria vesca HOM05D005449 ORTHO05D006916 9.0e-46 187.2 139 71.2
MBI18_g24865_MAGBIO Magnolia biondii HOM05D005449 ORTHO05D006916 9.0e-46 187.2 150 70.0
Oeu054120.1 Olea europaea HOM05D005449 ORTHO05D006916 1.2e-45 186.8 146 70.5
vmacro09952 Vaccinium macrocarpon HOM05D005449 ORTHO05D006916 1.2e-45 186.8 170 61.2
Sabra14G0095000 Salix brachista HOM05D005449 ORTHO05D006916 2.6e-45 185.7 116 82.8
EL10Ac7g17526 Beta vulgaris HOM05D005449 ORTHO05D006916 4.5e-45 184.9 149 67.1
Thecc.01G301700 Theobroma cacao HOM05D005449 ORTHO05D006916 7.6e-45 184.1 120 78.3
Gohir.D12G133700 Gossypium hirsutum HOM05D005449 ORTHO05D006916 1.0e-44 183.7 135 72.6
Gorai.008G144700 Gossypium raimondii HOM05D005449 ORTHO05D006916 1.0e-44 183.7 135 72.6
Actinidia21206 Actinidia chinensis HOM05D005449 ORTHO05D006916 1.3e-44 183.3 136 72.8
COL.COLO4_23333 Corchorus olitorius HOM05D005449 ORTHO05D006916 1.3e-44 183.3 134 72.4
Peaxi162Scf00445g00079 Petunia axillaris HOM05D005449 ORTHO05D006916 1.7e-44 183.0 138 72.5
Nitab4.5_0008438g0020 Nicotiana tabacum HOM05D005449 ORTHO05D006916 2.2e-44 182.6 146 68.5
ClCG10G010560 Citrullus lanatus HOM05D005449 ORTHO05D006916 3.8e-44 181.8 158 64.6
PGR119G1363 Punica granatum HOM05D005449 ORTHO05D006916 3.8e-44 181.8 141 70.2
Duzib211G0575 Durio zibethinus HOM05D005449 ORTHO05D006916 6.5e-44 181.0 134 70.9
Gohir.A12G129900 Gossypium hirsutum HOM05D005449 ORTHO05D006916 6.5e-44 181.0 135 71.9
Manes.05G061600 Manihot esculenta HOM05D005449 ORTHO05D006916 6.5e-44 181.0 149 67.1
Hund11156 Selenicereus undatus HOM05D005449 ORTHO05D006916 6.5e-44 181.0 158 62.0
Cpa.g.sc9.253 Carica papaya HOM05D005449 ORTHO05D006916 8.4e-44 180.6 127 75.6
unitig_26.g10174 Utricularia gibba HOM05D005449 ORTHO05D006916 8.4e-44 180.6 150 68.0
ECA236G0849 Erigeron canadensis HOM05D005449 ORTHO05D006916 1.4e-43 179.9 118 78.8
Rhsim09G0186400 Rhododendron simsii HOM05D005449 ORTHO05D006916 2.5e-43 179.1 166 62.0
FAN22G2041 Fragaria x ananassa HOM05D005449 ORTHO05D006916 3.2e-43 178.7 119 75.6
Oeu024404.1 Olea europaea HOM05D005449 ORTHO05D006916 3.2e-43 178.7 146 67.8
Peaxi162Scf00045g01343 Petunia axillaris HOM05D005449 ORTHO05D006916 4.2e-43 178.3 139 70.5
GSVIVG01028030001 Vitis vinifera HOM05D005449 ORTHO05D006916 4.2e-43 178.3 111 83.8
FvH4_4g11510 Fragaria vesca HOM05D005449 ORTHO05D006916 5.5e-43 177.9 119 74.8
FAN07G2516 Fragaria x ananassa HOM05D005449 ORTHO05D006916 5.5e-43 177.9 119 74.8
Nitab4.5_0002276g0010 Nicotiana tabacum HOM05D005449 ORTHO05D006916 5.5e-43 177.9 134 72.4
THA.LOC104817488 Tarenaya hassleriana HOM05D005449 ORTHO05D006916 5.5e-43 177.9 118 77.1
TWI59G1340 Tripterygium wilfordii HOM05D005449 ORTHO05D006916 1.6e-42 176.4 146 67.1
CDE05G2918 Ceratophyllum demersum HOM05D005449 ORTHO05D006916 2.1e-42 176.0 145 64.8
RcHm_v2.0_Chr4g0408421 Rosa chinensis HOM05D005449 ORTHO05D006916 2.7e-42 175.6 119 74.8
Sopen08g001890 Solanum pennellii HOM05D005449 ORTHO05D006916 4.6e-42 174.9 146 64.4
Solyc08g005920.3 Solanum lycopersicum HOM05D005449 ORTHO05D006916 7.9e-42 174.1 146 64.4
PSO675G2222 Papaver somniferum HOM05D005449 ORTHO05D006916 3.9e-41 171.8 137 68.6
Sc04g0009560 Simmondsia chinensis HOM05D005449 ORTHO05D006916 3.9e-41 171.8 150 62.0
PGSC0003DMG400004469 Solanum tuberosum HOM05D005449 ORTHO05D006916 3.9e-41 171.8 146 64.4
Nitab4.5_0000860g0030 Nicotiana tabacum HOM05D005449 ORTHO05D006916 9.7e-40 167.2 146 65.1
Os05g0154900 Oryza sativa ssp. japonica HOM05D005449 ORTHO05D006916 6.3e-39 164.5 120 71.7
AL5G33630 Arabidopsis lyrata HOM05D005449 ORTHO05D006916 1.1e-38 163.7 143 64.3
ATR0582G023 Amborella trichopoda HOM05D005449 ORTHO05D006916 1.8e-38 162.9 133 65.4
AUR62008679 Chenopodium quinoa HOM05D005449 ORTHO05D006916 4.5e-37 158.3 150 61.3
Zm00001eb346090 Zea mays HOM05D005449 ORTHO05D006916 3.2e-35 152.1 118 69.5
Lsat_1_v5_gn_7_53001 Lactuca sativa HOM05D005449 ORTHO05D006916 1.2e-34 150.2 118 72.0
HPP92_010681 Vanilla planifolia HOM05D005449 ORTHO05D006916 3.6e-34 148.7 142 60.6
Atru.chr5.1135 Acer truncatum HOM05D005449 ORTHO05D006916 7.9e-34 147.5 103 74.8
AUR62025565 Chenopodium quinoa HOM05D005449 ORTHO05D006916 8.8e-33 144.1 150 57.3
RcHm_v2.0_Chr6g0264541 Rosa chinensis HOM05D005449 ORTHO05D006916 1.3e-31 140.2 102 71.6
HanXRQChr06g0163731 Helianthus annuus HOM05D005449 ORTHO05D006916 3.1e-30 135.6 77 88.3
Sp5g09480 Schrenkiella parvula HOM05D005449 ORTHO05D006916 6.9e-30 134.4 116 65.5
Ciclev10033890m.g Citrus clementina HOM05D005449 ORTHO05D006916 9.1e-30 134.0 147 54.4
Carub.0005s1933 Capsella rubella HOM05D005449 ORTHO05D006916 1.5e-29 133.3 119 60.5
Thhalv10010784m.g Eutrema salsugineum HOM05D005449 ORTHO05D006916 1.5e-29 133.3 97 73.2
BcaB01g00336 Brassica carinata HOM05D005449 ORTHO05D006916 2.0e-29 132.9 147 54.4
C08p28130 Brassica napus HOM05D005449 ORTHO05D006916 3.4e-29 132.1 133 57.1
BraA09t40054Z Brassica rapa HOM05D005449 ORTHO05D006916 3.4e-29 132.1 133 57.1
A09p45940 Brassica napus HOM05D005449 ORTHO05D006916 5.9e-29 131.3 133 57.1
BolC8t50425H Brassica oleracea HOM05D005449 ORTHO05D006916 5.9e-29 131.3 133 57.1
CARHR162730 Cardamine hirsuta HOM05D005449 ORTHO05D006916 5.9e-29 131.3 119 60.5
HanXRQChr10g0316901 Helianthus annuus HOM05D005449 ORTHO05D006916 5.9e-29 131.3 125 59.2
AT3G52860 Arabidopsis thaliana HOM05D005449 ORTHO05D006916 7.7e-29 131.0 111 64.9
SMO367G0046 Selaginella moellendorffii HOM05D005449 ORTHO05D006916 1.7e-28 129.8 120 58.3
SEGI_14448 Sequoiadendron giganteum HOM05D005449 ORTHO05D006916 5.0e-28 128.3 122 58.2
Pp3c14_5880 Physcomitrium patens HOM05D005449 ORTHO05D006916 6.5e-28 127.9 117 57.3
FvH4_7g29690 Fragaria vesca HOM05D005449 ORTHO05D006916 1.1e-27 127.1 70 88.6
MD10G1102600 Malus domestica HOM05D005449 ORTHO05D006916 4.7e-26 121.7 85 75.3
Haze_04950 Corylus avellana HOM05D005449 ORTHO05D006916 1.4e-25 120.2 83 75.9
Atru.chr11.2437 Acer truncatum HOM05D005449 ORTHO05D006916 2.3e-25 119.4 174 44.3
PSO675G2923 Papaver somniferum HOM05D005449 ORTHO05D006916 1.3e-23 113.6 97 63.9
AagrBONN_evm.TU.Sc2ySwM_117.989 Anthoceros agrestis HOM05D005449 ORTHO05D006916 4.5e-21 105.1 117 50.4
Actinidia07783 Actinidia chinensis HOM05D005449 ORTHO05D006916 2.9e-20 102.4 73 75.3
Mapoly0162s0020 Marchantia polymorpha HOM05D005449 ORTHO05D006916 1.9e-19 99.8 120 45.8
Zm00001eb085090 Zea mays HOM05D005449 ORTHO05D006916 8.8e-17 90.9 134 45.5
Zm00001eb340530 Zea mays HOM05D005449 ORTHO05D006916 3.7e-15 85.5 111 48.6
Hma1.2p1_0276F.1_g111190 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 5.9e-13 78.2 63 65.1
BcaC07g39651 Brassica carinata HOM05D001272 ORTHO05D001843 9.4e-11 70.9 85 49.4
FAN17G0623 Fragaria x ananassa HOM05D005449 ORTHO05D006916 1.4e-09 67.0 35 85.7
Manes.01G220201 Manihot esculenta HOM05D005449 ORTHO05D006916 5.2e-09 65.1 84 47.6
Hma1.2p1_0494F.1_g165230 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 2.0e-08 63.2 33 87.9
C06p20730 Brassica napus HOM05D005449 ORTHO05D027985 8.2e-07 57.8 66 53.0
BolC6t37256H Brassica oleracea HOM05D005449 ORTHO05D027985 8.2e-07 57.8 66 53.0


User provided reference genes

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